Clone Sequence Records
BS05873.3prime Sequence
922 bp (855 high quality bases) assembled on 2005-12-03
> BS05873.3prime
ATGGTCTAGAAAGCTTTTAGCACAAGCCACCTTCGTCCTCGGCGTCGTTG
GTTTCAGCAGCAGTGTCGCCAGCCTTCTTCTCCATCTGTATACCCTGAGG
TAGTGGAATGTTTTTAGATAGAATAGCGTACTCAACATCCATATGTCGTA
TGAATGGGGATGCCAGCATCCTAGCAGCTAACTCGGGATCCTCGTCATCG
AAGGCTTGCAGAAGGGTCTGCAGTGTGGACACTTCCTCTGGCTCGCAGCA
GTTTCCCCACTCCCTGAAGGTCTTTTCGGCTTCCACGGAATCCCCGCGAG
CCAGTTGGACCATCACCAAGGCCACAACTAGGCGTCCAATTTGTCCGTAA
GATTCCGTTTGCTGATTCAAGCTGATCTCCTTTTTGAGCGCATTCGTGGC
TTCGTCGTACCTCCTTAGTTTGACCAGTATCCTGGAAACTTTTGATGCAT
ACTCGGCTGCTTGACGGACGGAATCCTCGATCATTATGACTTCTAGAGCA
TGCTGATAGAAGCGCAAAGCCATGTCAGGATGCTTGGATTCAGTTAACTT
GGCGGCTTTATCCAAGGCGGATGCGGCTGCCTCTGGGGAACCGTGCTGTT
GATACAAACTCGCCGATTTGTTGGCGTATTCCTCAACTTCGTGTAGCTTA
TCGGCATCCTTTGACAGCAAAATGATCTGTTCGTATGCCTTTGCAGCATG
GAACCAAGACTTGTTGTTTTTATAGGCGTCGATTGCCTTCAGAAAACACT
CCTTGCTCTTATCATAACTTTTAGCTATTCGATATGCAGTGGCAGCTTTG
GAATACTCATCCGCAGCACTATCGTAATCAGGAACCCATTTCAGCATGGA
CAACTTCAAGCTCTTCTCGGCCTGCTTCACCAAGTCCTCCGCTTCGGCAA
TCTTTTTGGCAGCGATTCCCGA
BS05873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3988-PA | 909 | gammaSnap-RA | 4..909 | 922..17 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-RA | 1117 | CG3988-RA | 74..980 | 922..16 | 4520 | 99.9 | Minus |
| sei-RC | 3197 | CG3182-RC | 137..384 | 165..412 | 1240 | 100 | Plus |
| gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 806..113 | 725 | 74 | Minus |
| sei-RC | 3197 | CG3182-RC | 446..520 | 408..482 | 375 | 100 | Plus |
| sei-RC | 3197 | CG3182-RC | 94..138 | 55..99 | 225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24047504..24047861 | 55..412 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 24048066..24048262 | 482..678 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 10120589..10121282 | 113..806 | 725 | 73.6 | Plus |
| 2R | 25286936 | 2R | 24048335..24048451 | 677..793 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 24047923..24047997 | 408..482 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 24048639..24048708 | 793..862 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 24048769..24048830 | 861..922 | 295 | 98.4 | Plus |
| 2R | 25286936 | 2R | 24047282..24047321 | 16..55 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:46:37 has no hits.
BS05873.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:56 Download gff for
BS05873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3988-PA | 5..909 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:18 Download gff for
BS05873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3988-PA | 5..909 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:46 Download gff for
BS05873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 75..985 | 8..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:20 Download gff for
BS05873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap1-RA | 75..985 | 8..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:20 Download gff for
BS05873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24048066..24048260 | 482..676 | 100 | <- | Plus |
| 2R | 24048335..24048450 | 677..792 | 100 | <- | Plus |
| 2R | 24048639..24048706 | 793..860 | 100 | <- | Plus |
| 2R | 24048769..24048829 | 861..921 | 98 | | Plus |
| 2R | 24047277..24047321 | 8..55 | 93 | <- | Plus |
| 2R | 24047505..24047859 | 56..410 | 100 | <- | Plus |
| 2R | 24047926..24047996 | 411..481 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:46 Download gff for
BS05873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19936292..19936352 | 861..921 | 98 | | Plus |
| arm_2R | 19935589..19935783 | 482..676 | 100 | <- | Plus |
| arm_2R | 19935858..19935973 | 677..792 | 100 | <- | Plus |
| arm_2R | 19934800..19934844 | 8..55 | 93 | <- | Plus |
| arm_2R | 19935028..19935382 | 56..410 | 100 | <- | Plus |
| arm_2R | 19935449..19935519 | 411..481 | 100 | <- | Plus |
| arm_2R | 19936162..19936229 | 793..860 | 100 | <- | Plus |
BS05873.5prime Sequence
902 bp (730 high quality bases) assembled on 2005-12-03
> BS05873.5prime
GAAGTTATCAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAG
CGGAGGACCTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTG
AAATGGGTTCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGC
CACTGCATATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTC
TGAAGGCAATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCA
AAGGCATACGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACA
CGAAGTTGAGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACG
GTTCCCCAGAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACT
GAATCCAAGCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGA
AGTCATAATGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAA
AAGTTTCCAGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAAT
GCGCTCAAAAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACA
AATTGGACGCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGG
ATTCCGTGGAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAG
CCAGAGGAAGTGTCCACACTGCAGACCCTTCTGNCAGCCTTCGATGACGA
GGATCCCGAGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATA
TGGATGTTGAGTACGCTATTCTATCTAAAAACATTCCACTACCTCAGGGT
ATACAGATGGAGAAGAANGCTGGCGACACTGCTGCTGAAACCACGACGCC
CA
BS05873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3988-PA | 909 | gammaSnap-RA | 1..877 | 17..893 | 4322 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-RA | 1117 | CG3988-RA | 71..955 | 17..900 | 4363 | 99.5 | Plus |
| sei-RC | 3197 | CG3182-RC | 137..384 | 777..530 | 1214 | 99.2 | Minus |
| gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 136..829 | 714 | 73.9 | Plus |
| sei-RC | 3197 | CG3182-RC | 446..520 | 534..460 | 375 | 100 | Minus |
| sei-RC | 3197 | CG3182-RC | 94..138 | 887..843 | 214 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24047504..24047861 | 887..530 | 1753 | 99.2 | Minus |
| 2R | 25286936 | 2R | 24048066..24048262 | 460..264 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 10120589..10121282 | 829..136 | 714 | 73.5 | Minus |
| 2R | 25286936 | 2R | 24048335..24048451 | 265..149 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 24047923..24047997 | 534..460 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 24048639..24048708 | 149..80 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 24048769..24048833 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:40:57 has no hits.
BS05873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:57 Download gff for
BS05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3988-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:19 Download gff for
BS05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3988-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:33 Download gff for
BS05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 64..955 | 11..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:40 Download gff for
BS05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap1-RA | 64..955 | 11..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:40 Download gff for
BS05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24047504..24047859 | 532..887 | 99 | <- | Minus |
| 2R | 24047926..24047996 | 461..531 | 100 | <- | Minus |
| 2R | 24048066..24048260 | 266..460 | 100 | <- | Minus |
| 2R | 24048335..24048450 | 150..265 | 100 | <- | Minus |
| 2R | 24048639..24048706 | 82..149 | 100 | <- | Minus |
| 2R | 24048769..24048840 | 11..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:33 Download gff for
BS05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19935027..19935382 | 532..887 | 99 | <- | Minus |
| arm_2R | 19935449..19935519 | 461..531 | 100 | <- | Minus |
| arm_2R | 19935589..19935783 | 266..460 | 100 | <- | Minus |
| arm_2R | 19935858..19935973 | 150..265 | 100 | <- | Minus |
| arm_2R | 19936162..19936229 | 82..149 | 100 | <- | Minus |
| arm_2R | 19936292..19936363 | 11..81 | 95 | | Minus |
BS05873.complete Sequence
941 bp (941 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635274
> BS05873.complete
GAAGTTATCAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAG
CGGAGGACCTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTG
AAATGGGTTCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGC
CACTGCATATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTC
TGAAGGCAATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCA
AAGGCATACGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACA
CGAAGTTGAGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACG
GTTCCCCAGAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACT
GAATCCAAGCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGA
AGTCATAATGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAA
AAGTTTCCAGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAAT
GCGCTCAAAAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACA
AATTGGACGCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGG
ATTCCGTGGAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAG
CCAGAGGAAGTGTCCACACTGCAGACCCTTCTGCAAGCCTTCGATGACGA
GGATCCCGAGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATA
TGGATGTTGAGTACGCTATTCTATCTAAAAACATTCCACTACCTCAGGGT
ATACAGATGGAGAAGAAGGCTGGCGACACTGCTGCTGAAACCAACGACGC
CGAGGACGAAGGTGGCTTGTGCTAAAAGCTTTCTAGACCAT
BS05873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-RA | 909 | CG3988-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
| gammaSnap2-RA | 852 | CG6208-PA | 93..786 | 136..829 | 725 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-RA | 1117 | CG3988-RA | 71..980 | 17..926 | 4550 | 100 | Plus |
| sei-RC | 3197 | CG3182-RC | 137..384 | 777..530 | 1240 | 100 | Minus |
| gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 136..829 | 725 | 73.6 | Plus |
| sei-RC | 3197 | CG3182-RC | 446..520 | 534..460 | 375 | 100 | Minus |
| sei-RC | 3197 | CG3182-RC | 94..138 | 887..843 | 225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24047504..24047861 | 887..530 | 1790 | 100 | Minus |
| 2R | 25286936 | 2R | 24048066..24048262 | 460..264 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 10120589..10121282 | 829..136 | 725 | 73.6 | Minus |
| 2R | 25286936 | 2R | 24048335..24048451 | 265..149 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 24047923..24047997 | 534..460 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 24048639..24048708 | 149..80 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 24048769..24048833 | 81..17 | 325 | 100 | Minus |
| 2R | 25286936 | 2R | 24047282..24047321 | 926..887 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:44:30 has no hits.
BS05873.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:11 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:29 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 50..971 | 11..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:31 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 71..977 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:12 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 50..971 | 11..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:37 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap1-RA | 71..977 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:37 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24047285..24047321 | 887..923 | 100 | <- | Minus |
| 2R | 24047505..24047859 | 532..886 | 100 | <- | Minus |
| 2R | 24047926..24047996 | 461..531 | 100 | <- | Minus |
| 2R | 24048066..24048260 | 266..460 | 100 | <- | Minus |
| 2R | 24048335..24048450 | 150..265 | 100 | <- | Minus |
| 2R | 24048639..24048706 | 82..149 | 100 | <- | Minus |
| 2R | 24048769..24048833 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:31 Download gff for
BS05873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19934808..19934844 | 887..923 | 100 | <- | Minus |
| arm_2R | 19935028..19935382 | 532..886 | 100 | <- | Minus |
| arm_2R | 19935449..19935519 | 461..531 | 100 | <- | Minus |
| arm_2R | 19935589..19935783 | 266..460 | 100 | <- | Minus |
| arm_2R | 19935858..19935973 | 150..265 | 100 | <- | Minus |
| arm_2R | 19936162..19936229 | 82..149 | 100 | <- | Minus |
| arm_2R | 19936292..19936356 | 17..81 | 100 | | Minus |
BS05873.pep Sequence
Translation from 16 to 924
> BS05873.pep
MSGIAAKKIAEAEDLVKQAEKSLKLSMLKWVPDYDSAADEYSKAATAYRI
AKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEY
ANKSASLYQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHALEVIMIE
DSVRQAAEYASKVSRILVKLRRYDEATNALKKEISLNQQTESYGQIGRLV
VALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDEDPELA
ARMLASPFIRHMDVEYAILSKNIPLPQGIQMEKKAGDTAAETNDAEDEGG
LC*
BS05873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-PA | 302 | CG3988-PA | 1..302 | 1..302 | 1524 | 100 | Plus |
| gammaSnap2-PA | 283 | CG6208-PA | 1..282 | 1..290 | 991 | 67.3 | Plus |
