Clone BS05874 Report

Search the DGRC for BS05874

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG11509-RA
Protein status:BS05874.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05874.3prime Sequence

384 bp (383 high quality bases) assembled on 2005-12-03

> BS05874.3prime
ATGGTCTAGAAAGCTTTTATTGTAGTTTGAGTTCGAGTTCAAGTTCGAGC
TTATGGGAAAAACAATTCGAAATTGTCGCCAAAGGAAACTTCTGTCTGTT
GCTTTTTGTATTCATACTACTGCTGTTGGTTTTCCCTTTTGAATTCTGAC
TTGATCTTCGATCGGTGTGGCTGTGGCTGTGGTTGTGGGTGTGGGTGTAG
TTACTGATATTGGTATGGGTTATATTTCTACAGCTATAAGTATGCAAGCG
TTTGTGTACGAGTGAGTGTTTCCAACTAGATAAGATATTTAACTGATTTG
GCTTGTCCTTGATCCTGAGCGTAGAAAGGAGCCGAATGGAACATCTTGGA
ACACCAGAATCCACGTCCATGTCGACTGATAACT

BS05874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 354 CG11509-RA 1..354 370..17 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 742 CG11509-RA 213..568 370..15 1780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652533..1652888 370..15 1780 100 Minus
Blast to na_te.dros performed 2015-02-12 01:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1932..1984 196..143 114 70.4 Minus

BS05874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:58 Download gff for BS05874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 17..370 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:21 Download gff for BS05874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 17..370 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:51:58 Download gff for BS05874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..575 7..373 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:57 Download gff for BS05874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..575 7..373 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:57 Download gff for BS05874.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1652531..1652895 7..373 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:51:58 Download gff for BS05874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546564..1546928 7..373 98   Minus

BS05874.5prime Sequence

384 bp (383 high quality bases) assembled on 2005-12-03

> BS05874.5prime
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAATAAAAGCTTTCTAGACC

BS05874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 354 CG11509-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 742 CG11509-RA 213..568 17..372 1780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652533..1652888 17..372 1780 100 Plus
Blast to na_te.dros performed 2015-02-12 01:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1932..1984 191..244 114 70.4 Plus

BS05874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:59 Download gff for BS05874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 17..370 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:23 Download gff for BS05874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:49 Download gff for BS05874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..575 14..380 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:51 Download gff for BS05874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..575 14..380 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:51 Download gff for BS05874.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1652531..1652895 14..380 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:49 Download gff for BS05874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546564..1546928 14..380 98   Plus

BS05874.complete Sequence

386 bp (386 high quality bases) assembled on 2005-10-27

GenBank Submission: KX794523

> BS05874.complete
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAATAAAAGCTTTCTAGACCAT

BS05874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 354 CG11509-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 742 CG11509-RA 213..568 17..372 1780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652533..1652888 17..372 1780 100 Plus
Blast to na_te.dros performed 2014-11-27 10:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1932..1984 191..244 114 70.4 Plus

BS05874.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:21:13 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:10 Download gff for BS05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 213..564 17..368 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:21:13 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:58 Download gff for BS05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 213..564 17..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:58 Download gff for BS05874.complete
Subject Subject Range Query Range Percent Splice Strand
X 1652533..1652884 17..368 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:10 Download gff for BS05874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546566..1546917 17..368 100   Plus

BS05874.pep Sequence

Translation from 16 to 369

> BS05874.pep
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQ*

BS05874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 117 CG11509-PA 1..117 1..117 620 100 Plus