Clone Sequence Records
BS05874.3prime Sequence
384 bp (383 high quality bases) assembled on 2005-12-03
> BS05874.3prime
ATGGTCTAGAAAGCTTTTATTGTAGTTTGAGTTCGAGTTCAAGTTCGAGC
TTATGGGAAAAACAATTCGAAATTGTCGCCAAAGGAAACTTCTGTCTGTT
GCTTTTTGTATTCATACTACTGCTGTTGGTTTTCCCTTTTGAATTCTGAC
TTGATCTTCGATCGGTGTGGCTGTGGCTGTGGTTGTGGGTGTGGGTGTAG
TTACTGATATTGGTATGGGTTATATTTCTACAGCTATAAGTATGCAAGCG
TTTGTGTACGAGTGAGTGTTTCCAACTAGATAAGATATTTAACTGATTTG
GCTTGTCCTTGATCCTGAGCGTAGAAAGGAGCCGAATGGAACATCTTGGA
ACACCAGAATCCACGTCCATGTCGACTGATAACT
BS05874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 354 | CG11509-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 742 | CG11509-RA | 213..568 | 370..15 | 1780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652533..1652888 | 370..15 | 1780 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 1932..1984 | 196..143 | 114 | 70.4 | Minus |
BS05874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:58 Download gff for
BS05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:21 Download gff for
BS05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:51:58 Download gff for
BS05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..575 | 7..373 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:57 Download gff for
BS05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..575 | 7..373 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:57 Download gff for
BS05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652531..1652895 | 7..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:51:58 Download gff for
BS05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546564..1546928 | 7..373 | 98 | | Minus |
BS05874.5prime Sequence
384 bp (383 high quality bases) assembled on 2005-12-03
> BS05874.5prime
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAATAAAAGCTTTCTAGACC
BS05874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 354 | CG11509-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 742 | CG11509-RA | 213..568 | 17..372 | 1780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652533..1652888 | 17..372 | 1780 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 1932..1984 | 191..244 | 114 | 70.4 | Plus |
BS05874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:59 Download gff for
BS05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:23 Download gff for
BS05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:49 Download gff for
BS05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..575 | 14..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:51 Download gff for
BS05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..575 | 14..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:51 Download gff for
BS05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652531..1652895 | 14..380 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:49 Download gff for
BS05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546564..1546928 | 14..380 | 98 | | Plus |
BS05874.complete Sequence
386 bp (386 high quality bases) assembled on 2005-10-27
GenBank Submission: KX794523
> BS05874.complete
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAATAAAAGCTTTCTAGACCAT
BS05874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 354 | CG11509-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 742 | CG11509-RA | 213..568 | 17..372 | 1780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652533..1652888 | 17..372 | 1780 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 1932..1984 | 191..244 | 114 | 70.4 | Plus |
BS05874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:21:13 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:10 Download gff for
BS05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 213..564 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:21:13 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:58 Download gff for
BS05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 213..564 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:58 Download gff for
BS05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652533..1652884 | 17..368 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:10 Download gff for
BS05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546566..1546917 | 17..368 | 100 | | Plus |
BS05874.pep Sequence
Translation from 16 to 369
> BS05874.pep
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQ*
BS05874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 117 | CG11509-PA | 1..117 | 1..117 | 620 | 100 | Plus |