Clone BS05876 Report

Search the DGRC for BS05876

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG11912-RA
Protein status:BS05876.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05876.3prime Sequence

846 bp (783 high quality bases) assembled on 2005-12-03

> BS05876.3prime
ATGGTCTAGAAAGCTTCTATTTCGCCTTACGGTTCTCATCGATCCAAGGC
AAAAACGAAGACACTGATGTGTATACGGAAGGATAGGTTGTGGACAAACA
GGGTGTGTATCCCCAGGAGACGATGCCAATCAGCTCGGCTCCTCGACTGC
TGGATTGCGAGACCAGGGGGCCGCCACTGTCTCCGTTGCAGGATCCGTCG
GCTTTTCCGGGGGTGTGGGTGCATACATTGGTTTCTGCCAGCGAATTGTT
GGATGGCAACGCCGCCTTGCATTCGTTGTAGTCAACAATGATAGCGTCCA
GTTTCTGAAGGTTCAGCGGCAGCAATCCTGAGTTGTCGCGGCCCCAGCCG
TACAGATATCCATCGCTAGTGCCTTGGAATGTCTTTGAAGGAAGACTTAC
TGCGGAAACCGGATTGCTGCCATCACGGGCAACGGCATTCAGGTCAAAGG
CATCCTCTTCCTTGAGGAGAATTAGGCCGATGTCGTTGGGTCCCACACCG
CCACCGTAGTTCTCGTGGATCACGTACTGGGCATTGGTGAACTTCCTAAT
CTGAACGTTCTCCTGGTCAGTGCGGCTGTGTGCACCGGCAACTGCCTGAC
CCTGATTGTAGGTCAGGCAGTGTGCGGCGGTCACAATGGTCACCTCATCG
AGCAAGCTTCCTGCACAGAAGTGCGAGTTGGATGTGGTCTGTAAGGACAC
AATATAGGGCGCCTCTCCCTTCGCCGCTTCATAGCCGTTGATGATGCGAC
CTTCGGGGAATCCCGGCTGAGGGACAGAAATGGCCGAAACCGAAGCCAGA
GCCAGTGCGAATATAACCGCGAATTGTTTCATGTCGACTGATAACT

BS05876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 816 CG11912-RA 1..816 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 27..843 832..16 4085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318417..319233 16..832 4085 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:28:00 has no hits.

BS05876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:02 Download gff for BS05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:28 Download gff for BS05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:06 Download gff for BS05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..843 16..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:08 Download gff for BS05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..843 16..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:08 Download gff for BS05876.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 318417..319238 16..837 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:06 Download gff for BS05876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318417..319238 16..837 99   Plus

BS05876.5prime Sequence

846 bp (811 high quality bases) assembled on 2005-12-03

> BS05876.5prime
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGNGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCCGTAGGCGAAATAGAAGCTTTCTAGACC

BS05876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 816 CG11912-RA 1..802 17..818 3991 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 27..843 17..833 4029 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318417..319233 833..17 4029 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 07:15:09 has no hits.

BS05876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:03 Download gff for BS05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:29 Download gff for BS05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:25 Download gff for BS05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..843 12..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:55 Download gff for BS05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..843 12..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:55 Download gff for BS05876.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 318417..319238 12..833 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:25 Download gff for BS05876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318417..319238 12..833 99   Minus

BS05876.complete Sequence

848 bp (848 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635275

> BS05876.complete
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCGTAAGGCGAAATAGAAGCTTTCTAGACCAT

BS05876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 816 CG11912-PA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 27..843 17..833 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318417..319233 833..17 4085 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:51:25 has no hits.

BS05876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:14 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:32 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 17..838 12..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:06 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 27..836 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:14 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 17..838 12..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:14 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 27..836 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:14 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 318424..319233 17..826 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:06 Download gff for BS05876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318424..319233 17..826 100   Minus

BS05876.pep Sequence

Translation from 16 to 831

> BS05876.pep
MKQFAVIFALALASVSAISVPQPGFPEGRIINGYEAAKGEAPYIVSLQTT
SNSHFCAGSLLDEVTIVTAAHCLTYNQGQAVAGAHSRTDQENVQIRKFTN
AQYVIHENYGGGVGPNDIGLILLKEEDAFDLNAVARDGSNPVSAVSLPSK
TFQGTSDGYLYGWGRDNSGLLPLNLQKLDAIIVDYNECKAALPSNNSLAE
TNVCTHTPGKADGSCNGDSGGPLVSQSSSRGAELIGIVSWGYTPCLSTTY
PSVYTSVSSFLPWIDENRKAK*

BS05876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 271 CG11912-PA 1..271 1..271 1415 100 Plus
CG11911-PA 277 CG11911-PA 30..272 23..270 459 39.9 Plus
Phae2-PC 265 CG16997-PC 11..264 6..269 375 38.2 Plus
Phae2-PB 265 CG16997-PB 11..264 6..269 375 38.2 Plus
Phae1-PB 270 CG16996-PB 15..268 6..269 362 36.9 Plus