Clone Sequence Records
BS05876.3prime Sequence
846 bp (783 high quality bases) assembled on 2005-12-03
> BS05876.3prime
ATGGTCTAGAAAGCTTCTATTTCGCCTTACGGTTCTCATCGATCCAAGGC
AAAAACGAAGACACTGATGTGTATACGGAAGGATAGGTTGTGGACAAACA
GGGTGTGTATCCCCAGGAGACGATGCCAATCAGCTCGGCTCCTCGACTGC
TGGATTGCGAGACCAGGGGGCCGCCACTGTCTCCGTTGCAGGATCCGTCG
GCTTTTCCGGGGGTGTGGGTGCATACATTGGTTTCTGCCAGCGAATTGTT
GGATGGCAACGCCGCCTTGCATTCGTTGTAGTCAACAATGATAGCGTCCA
GTTTCTGAAGGTTCAGCGGCAGCAATCCTGAGTTGTCGCGGCCCCAGCCG
TACAGATATCCATCGCTAGTGCCTTGGAATGTCTTTGAAGGAAGACTTAC
TGCGGAAACCGGATTGCTGCCATCACGGGCAACGGCATTCAGGTCAAAGG
CATCCTCTTCCTTGAGGAGAATTAGGCCGATGTCGTTGGGTCCCACACCG
CCACCGTAGTTCTCGTGGATCACGTACTGGGCATTGGTGAACTTCCTAAT
CTGAACGTTCTCCTGGTCAGTGCGGCTGTGTGCACCGGCAACTGCCTGAC
CCTGATTGTAGGTCAGGCAGTGTGCGGCGGTCACAATGGTCACCTCATCG
AGCAAGCTTCCTGCACAGAAGTGCGAGTTGGATGTGGTCTGTAAGGACAC
AATATAGGGCGCCTCTCCCTTCGCCGCTTCATAGCCGTTGATGATGCGAC
CTTCGGGGAATCCCGGCTGAGGGACAGAAATGGCCGAAACCGAAGCCAGA
GCCAGTGCGAATATAACCGCGAATTGTTTCATGTCGACTGATAACT
BS05876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-PA | 816 | CG11912-RA | 1..816 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 898 | CG11912-RA | 27..843 | 832..16 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 318417..319233 | 16..832 | 4085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:28:00 has no hits.
BS05876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:02 Download gff for
BS05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:28 Download gff for
BS05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:06 Download gff for
BS05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..843 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:08 Download gff for
BS05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..843 | 16..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:08 Download gff for
BS05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 318417..319238 | 16..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:06 Download gff for
BS05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 318417..319238 | 16..837 | 99 | | Plus |
BS05876.5prime Sequence
846 bp (811 high quality bases) assembled on 2005-12-03
> BS05876.5prime
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGNGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCCGTAGGCGAAATAGAAGCTTTCTAGACC
BS05876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-PA | 816 | CG11912-RA | 1..802 | 17..818 | 3991 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 898 | CG11912-RA | 27..843 | 17..833 | 4029 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 318417..319233 | 833..17 | 4029 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:15:09 has no hits.
BS05876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:03 Download gff for
BS05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:29 Download gff for
BS05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:25 Download gff for
BS05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..843 | 12..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:55 Download gff for
BS05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..843 | 12..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:55 Download gff for
BS05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 318417..319238 | 12..833 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:25 Download gff for
BS05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 318417..319238 | 12..833 | 99 | | Minus |
BS05876.complete Sequence
848 bp (848 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635275
> BS05876.complete
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCGTAAGGCGAAATAGAAGCTTTCTAGACCAT
BS05876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 816 | CG11912-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 898 | CG11912-RA | 27..843 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 318417..319233 | 833..17 | 4085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:25 has no hits.
BS05876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:14 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:32 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 17..838 | 12..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:06 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 27..836 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:14 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 17..838 | 12..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:14 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 27..836 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:14 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 318424..319233 | 17..826 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:06 Download gff for
BS05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 318424..319233 | 17..826 | 100 | | Minus |
BS05876.pep Sequence
Translation from 16 to 831
> BS05876.pep
MKQFAVIFALALASVSAISVPQPGFPEGRIINGYEAAKGEAPYIVSLQTT
SNSHFCAGSLLDEVTIVTAAHCLTYNQGQAVAGAHSRTDQENVQIRKFTN
AQYVIHENYGGGVGPNDIGLILLKEEDAFDLNAVARDGSNPVSAVSLPSK
TFQGTSDGYLYGWGRDNSGLLPLNLQKLDAIIVDYNECKAALPSNNSLAE
TNVCTHTPGKADGSCNGDSGGPLVSQSSSRGAELIGIVSWGYTPCLSTTY
PSVYTSVSSFLPWIDENRKAK*
BS05876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-PA | 271 | CG11912-PA | 1..271 | 1..271 | 1415 | 100 | Plus |
CG11911-PA | 277 | CG11911-PA | 30..272 | 23..270 | 459 | 39.9 | Plus |
Phae2-PC | 265 | CG16997-PC | 11..264 | 6..269 | 375 | 38.2 | Plus |
Phae2-PB | 265 | CG16997-PB | 11..264 | 6..269 | 375 | 38.2 | Plus |
Phae1-PB | 270 | CG16996-PB | 15..268 | 6..269 | 362 | 36.9 | Plus |