Clone Sequence Records
BS05877.3prime Sequence
720 bp (719 high quality bases) assembled on 2005-12-03
> BS05877.3prime
ATGGTCTAGAAAGCTTCTACATATTGTCACATCTAACTATCATAGGCGGA
GCGAACTGGTGGTGGCGCACACCAAAGGAGTAGCCCGGTCCACTCTTGCC
AGGACGATAGTACATGAGGTCGTAGTAGTTGGGTCCAGGTCCGACATTCT
CGCCCGGAATAGTGGTGCGCGGCTGCATCGAGTATATCGGAGCACGTGTC
AGTTTGACATTGATATCACCACCGCCATATGCAGCCGGACCCGGAGAATT
CGTCTTGTTCAAAATCTTTGTTTGTAGTCCCATGCTATAGCTCGGGACTC
CAGGACGAACGGCATTGACCTCGTACTTGTAGGCATTGGGACCGGGACCA
TCCTTCTTGAAGTTAAAGTCCGTTCGTAGGCCCATCGAATACGAAGGAGC
ATTAACCCCCTTAAAGAATGGCCTATTATGAACATCGTGTGCTCCCGGAC
CGGGACTGCTTCGCTTATCGATGACATTGGTTCTGGGCGCCATCGAGAAC
TCCAAACCCTTGCTCGTGCCATAGCGAGTCAACTTGTCCACCTTGTAGGC
CCCTGGACCAGGACCCAGATCCTCACCAGGAGCACGGGTGCGCATGCCGA
AAGAGTACTGCGGCAACCGCTGTTTGCGGTTGTCATGCTTATCATAGCCC
ACAGTGGGGGGCAGCATGTAAACGCCGGGTCCAGGGCCAAAAGGTCGCAC
CGCCATGTCGACTGATAACT
BS05877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-PA | 690 | CG10252-RA | 1..690 | 706..17 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 833 | CG10252-RA | 84..774 | 706..16 | 3455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23695280..23695545 | 16..281 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 23695859..23696083 | 464..688 | 1110 | 99.6 | Plus |
3R | 32079331 | 3R | 23695616..23695804 | 281..469 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:27:46 has no hits.
BS05877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:04 Download gff for
BS05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:31 Download gff for
BS05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:03 Download gff for
BS05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..774 | 16..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:06 Download gff for
BS05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..774 | 16..706 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:06 Download gff for
BS05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23695280..23695545 | 16..281 | 100 | <- | Plus |
3R | 23695617..23695803 | 282..468 | 100 | <- | Plus |
3R | 23695864..23696082 | 469..687 | 100 | <- | Plus |
3R | 23696144..23696162 | 688..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:03 Download gff for
BS05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19521002..19521267 | 16..281 | 100 | <- | Plus |
arm_3R | 19521339..19521525 | 282..468 | 100 | <- | Plus |
arm_3R | 19521586..19521804 | 469..687 | 100 | <- | Plus |
arm_3R | 19521866..19521884 | 688..706 | 100 | | Plus |
BS05877.5prime Sequence
720 bp (719 high quality bases) assembled on 2005-12-03
> BS05877.5prime
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGTAGAAGCTTTCTAGACC
BS05877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-PA | 690 | CG10252-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 833 | CG10252-RA | 84..774 | 17..707 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23695280..23695545 | 707..442 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 23695859..23696083 | 259..35 | 1110 | 99.6 | Minus |
3R | 32079331 | 3R | 23695616..23695804 | 442..254 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:43:44 has no hits.
BS05877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:05 Download gff for
BS05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:32 Download gff for
BS05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:41 Download gff for
BS05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..774 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:33:32 Download gff for
BS05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..774 | 17..707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:33:32 Download gff for
BS05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23695280..23695545 | 442..707 | 100 | <- | Minus |
3R | 23695617..23695803 | 255..441 | 100 | <- | Minus |
3R | 23695864..23696082 | 36..254 | 100 | <- | Minus |
3R | 23696144..23696162 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:41 Download gff for
BS05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19521002..19521267 | 442..707 | 100 | <- | Minus |
arm_3R | 19521339..19521525 | 255..441 | 100 | <- | Minus |
arm_3R | 19521586..19521804 | 36..254 | 100 | <- | Minus |
arm_3R | 19521866..19521884 | 17..35 | 100 | | Minus |
BS05877.complete Sequence
722 bp (722 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635276
> BS05877.complete
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGTAGAAGCTTTCTAGACCAT
BS05877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 690 | CG10252-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 833 | CG10252-RA | 84..774 | 17..707 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23695280..23695545 | 707..442 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 23695859..23696083 | 259..35 | 1110 | 99.6 | Minus |
3R | 32079331 | 3R | 23695616..23695804 | 442..254 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:39:50 has no hits.
BS05877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:15 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:33 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 117..807 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:34 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..773 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:16 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 117..807 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:27 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..773 | 17..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:27 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23695281..23695545 | 442..706 | 100 | <- | Minus |
3R | 23695617..23695803 | 255..441 | 100 | <- | Minus |
3R | 23695864..23696082 | 36..254 | 100 | <- | Minus |
3R | 23696144..23696162 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:34 Download gff for
BS05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19521003..19521267 | 442..706 | 100 | <- | Minus |
arm_3R | 19521339..19521525 | 255..441 | 100 | <- | Minus |
arm_3R | 19521586..19521804 | 36..254 | 100 | <- | Minus |
arm_3R | 19521866..19521884 | 17..35 | 100 | | Minus |
BS05877.pep Sequence
Translation from 16 to 705
> BS05877.pep
MAVRPFGPGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPG
PGAYKVDKLTRYGTSKGLEFSMAPRTNVIDKRSSPGPGAHDVHNRPFFKG
VNAPSYSMGLRTDFNFKKDGPGPNAYKYEVNAVRPGVPSYSMGLQTKILN
KTNSPGPAAYGGGDINVKLTRAPIYSMQPRTTIPGENVGPGPNYYDLMYY
RPGKSGPGYSFGVRHHQFAPPMIVRCDNM*
BS05877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-PA | 229 | CG10252-PA | 1..229 | 1..229 | 1262 | 100 | Plus |
CG8086-PI | 1603 | CG8086-PI | 45..263 | 1..220 | 239 | 29.6 | Plus |
CG8086-PA | 272 | CG8086-PA | 19..243 | 1..218 | 217 | 28.5 | Plus |
CG8086-PB | 298 | CG8086-PB | 45..269 | 1..218 | 217 | 28.5 | Plus |
CG8086-PK | 261 | CG8086-PK | 19..242 | 1..218 | 214 | 28.9 | Plus |
CG8086-PI | 1603 | CG8086-PI | 234..425 | 8..217 | 175 | 25.7 | Plus |
CG8086-PI | 1603 | CG8086-PI | 165..356 | 8..214 | 173 | 28 | Plus |
CG8086-PI | 1603 | CG8086-PI | 465..659 | 16..220 | 152 | 27.3 | Plus |
CG8086-PI | 1603 | CG8086-PI | 399..588 | 16..215 | 150 | 27.5 | Plus |