Clone BS05877 Report

Search the DGRC for BS05877

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG10252-RA
Protein status:BS05877.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05877.3prime Sequence

720 bp (719 high quality bases) assembled on 2005-12-03

> BS05877.3prime
ATGGTCTAGAAAGCTTCTACATATTGTCACATCTAACTATCATAGGCGGA
GCGAACTGGTGGTGGCGCACACCAAAGGAGTAGCCCGGTCCACTCTTGCC
AGGACGATAGTACATGAGGTCGTAGTAGTTGGGTCCAGGTCCGACATTCT
CGCCCGGAATAGTGGTGCGCGGCTGCATCGAGTATATCGGAGCACGTGTC
AGTTTGACATTGATATCACCACCGCCATATGCAGCCGGACCCGGAGAATT
CGTCTTGTTCAAAATCTTTGTTTGTAGTCCCATGCTATAGCTCGGGACTC
CAGGACGAACGGCATTGACCTCGTACTTGTAGGCATTGGGACCGGGACCA
TCCTTCTTGAAGTTAAAGTCCGTTCGTAGGCCCATCGAATACGAAGGAGC
ATTAACCCCCTTAAAGAATGGCCTATTATGAACATCGTGTGCTCCCGGAC
CGGGACTGCTTCGCTTATCGATGACATTGGTTCTGGGCGCCATCGAGAAC
TCCAAACCCTTGCTCGTGCCATAGCGAGTCAACTTGTCCACCTTGTAGGC
CCCTGGACCAGGACCCAGATCCTCACCAGGAGCACGGGTGCGCATGCCGA
AAGAGTACTGCGGCAACCGCTGTTTGCGGTTGTCATGCTTATCATAGCCC
ACAGTGGGGGGCAGCATGTAAACGCCGGGTCCAGGGCCAAAAGGTCGCAC
CGCCATGTCGACTGATAACT

BS05877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 690 CG10252-RA 1..690 706..17 3450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 833 CG10252-RA 84..774 706..16 3455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695280..23695545 16..281 1330 100 Plus
3R 32079331 3R 23695859..23696083 464..688 1110 99.6 Plus
3R 32079331 3R 23695616..23695804 281..469 945 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:27:46 has no hits.

BS05877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:04 Download gff for BS05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 17..706 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:31 Download gff for BS05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 17..706 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:03 Download gff for BS05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..774 16..706 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:06 Download gff for BS05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..774 16..706 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:06 Download gff for BS05877.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23695280..23695545 16..281 100 <- Plus
3R 23695617..23695803 282..468 100 <- Plus
3R 23695864..23696082 469..687 100 <- Plus
3R 23696144..23696162 688..706 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:03 Download gff for BS05877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19521002..19521267 16..281 100 <- Plus
arm_3R 19521339..19521525 282..468 100 <- Plus
arm_3R 19521586..19521804 469..687 100 <- Plus
arm_3R 19521866..19521884 688..706 100   Plus

BS05877.5prime Sequence

720 bp (719 high quality bases) assembled on 2005-12-03

> BS05877.5prime
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGTAGAAGCTTTCTAGACC

BS05877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 690 CG10252-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 833 CG10252-RA 84..774 17..707 3455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695280..23695545 707..442 1330 100 Minus
3R 32079331 3R 23695859..23696083 259..35 1110 99.6 Minus
3R 32079331 3R 23695616..23695804 442..254 945 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:43:44 has no hits.

BS05877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:05 Download gff for BS05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:32 Download gff for BS05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:41 Download gff for BS05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..774 17..707 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:33:32 Download gff for BS05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..774 17..707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:33:32 Download gff for BS05877.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23695280..23695545 442..707 100 <- Minus
3R 23695617..23695803 255..441 100 <- Minus
3R 23695864..23696082 36..254 100 <- Minus
3R 23696144..23696162 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:41 Download gff for BS05877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19521002..19521267 442..707 100 <- Minus
arm_3R 19521339..19521525 255..441 100 <- Minus
arm_3R 19521586..19521804 36..254 100 <- Minus
arm_3R 19521866..19521884 17..35 100   Minus

BS05877.complete Sequence

722 bp (722 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635276

> BS05877.complete
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGTAGAAGCTTTCTAGACCAT

BS05877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 690 CG10252-PA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 833 CG10252-RA 84..774 17..707 3455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695280..23695545 707..442 1330 100 Minus
3R 32079331 3R 23695859..23696083 259..35 1110 99.6 Minus
3R 32079331 3R 23695616..23695804 442..254 945 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:39:50 has no hits.

BS05877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:15 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:33 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 117..807 17..707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:34 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..773 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:16 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 117..807 17..707 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:27 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..773 17..706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:27 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23695281..23695545 442..706 100 <- Minus
3R 23695617..23695803 255..441 100 <- Minus
3R 23695864..23696082 36..254 100 <- Minus
3R 23696144..23696162 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:34 Download gff for BS05877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19521003..19521267 442..706 100 <- Minus
arm_3R 19521339..19521525 255..441 100 <- Minus
arm_3R 19521586..19521804 36..254 100 <- Minus
arm_3R 19521866..19521884 17..35 100   Minus

BS05877.pep Sequence

Translation from 16 to 705

> BS05877.pep
MAVRPFGPGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPG
PGAYKVDKLTRYGTSKGLEFSMAPRTNVIDKRSSPGPGAHDVHNRPFFKG
VNAPSYSMGLRTDFNFKKDGPGPNAYKYEVNAVRPGVPSYSMGLQTKILN
KTNSPGPAAYGGGDINVKLTRAPIYSMQPRTTIPGENVGPGPNYYDLMYY
RPGKSGPGYSFGVRHHQFAPPMIVRCDNM*

BS05877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 229 CG10252-PA 1..229 1..229 1262 100 Plus
CG8086-PI 1603 CG8086-PI 45..263 1..220 239 29.6 Plus
CG8086-PA 272 CG8086-PA 19..243 1..218 217 28.5 Plus
CG8086-PB 298 CG8086-PB 45..269 1..218 217 28.5 Plus
CG8086-PK 261 CG8086-PK 19..242 1..218 214 28.9 Plus
CG8086-PI 1603 CG8086-PI 234..425 8..217 175 25.7 Plus
CG8086-PI 1603 CG8086-PI 165..356 8..214 173 28 Plus
CG8086-PI 1603 CG8086-PI 465..659 16..220 152 27.3 Plus
CG8086-PI 1603 CG8086-PI 399..588 16..215 150 27.5 Plus