Clone Sequence Records
BS05878.3prime Sequence
855 bp (773 high quality bases) assembled on 2005-12-03
> BS05878.3prime
ATGGTCTAGAAAGCTTTCATTTGTTAATATCCACGCGACTCACACACAAC
GTGTGATCATAAAAGGAGCAAGTGGCCATGGTCAAGGACGCATCGTCCTT
GTTTCTCCATGGTGCCCAATCGGCCCCGTAGCAGATGCTCTTATGCTCCT
CATAGGCGCCCAGTAAACTCAGGCCAGGTGCCGCGACATCCAGCTGCACC
ACGCTAAAGTTGGTGTACATGCAGGCGGCCAGGATGAGATCGGGCTGGGC
AGGATGCGGCTTCAGCCTCCAGATGCCTCCGCTCAAGTCCAGTTCCGCCA
GTGATCGCTTCATCGATCTGGTGTCGAAGAGACGCAACTGCTCATCATAG
CTACCCGTGAGCAGATGGTTTTCGTGCCGCGGATGACTTAGCAGACAGGT
GACTCCAGCCATGTGCGCCCGGTTGGTCCACGCACGCTGCTTGGTGCGCA
GATCGTGGGCCATGAGCAGCATATCGTCGCCACCACTGTACAGAATGTGC
GGTGACCAACGATCAAAGGCACAGGTCCAAGCCTCAAAGCCATGGGACAA
CCACGACCGTTCGCGGATTATCTCACCCTGTGATGAGTAGCTCAATAGAT
TTAGGCCGCCTTTGGAATCGGAGATGGCCAGTCGGATGTGCTGCCCGTCA
TGTTGCCAGTCTAGGGCCAGCGCCAATGGCGCTTCCTCCGACGAATCCTG
CTCCGCCAGGCTAAAACACGTACGCCTCTGCAGTAGCTTCGCATCCTGGA
GAAACTCGTACAATTCCATCTGGCCTAAAGAGTTGACCGTGGCCAGGTGG
GGATTACACTCACTGCTCCAGGCCGGCAGCCACTTCATGTCGAGAATGGC
AGACG
BS05878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-PA | 1071 | CG3184-RA | 233..1071 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1179 | CG3184-RA | 267..1106 | 855..16 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6687669..6688508 | 16..855 | 4200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:19:38 has no hits.
BS05878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:06 Download gff for
BS05878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 233..1071 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:33 Download gff for
BS05878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 233..1071 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:54 Download gff for
BS05878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 267..1106 | 16..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:11 Download gff for
BS05878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 267..1106 | 16..855 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:11 Download gff for
BS05878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6687669..6688508 | 16..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:54 Download gff for
BS05878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6581702..6582541 | 16..855 | 100 | | Plus |
BS05878.5prime Sequence
901 bp (872 high quality bases) assembled on 2005-12-03
> BS05878.5prime
GAAGTTATCAGTCGACATGTTTACAACGCTCCACAGCGAGGATACGGAAT
ATTCGGCAGATTCTGTGGAGTGGCTGACACACGATGATGCGGCAACGGGT
TTCTTTGCCTGCGGCACCTATCAGTTGGTCCAGGAGGAGGACGAGCCGGC
GGCGGAGACTTCAGCCAAGCGTCCACGCAAGGGTCGCGTTTATTTATACC
AGTTTGAAGAGGAAAACTGCCGCCTGGAGCGGCTACAGTGCATCGAAACG
TCTGCCATTCTCGACATGAAGTGGCTGCCGGCCTGGAGCAGTGAGTGTAA
TCCCCACCTGGCCACGGTCAACTCTTTAGGCCAGATGGAATTGTACGAGT
TTCTCCAGGATGCGAAGCTACTGCAGAGGCGTACGTGTTTTAGCCTGGCG
GAGCAGGATTCGTCGGAGGAAGCGCCATTGGCGCTGGCCCTAGACTGGCA
ACATGACGGGCAGCACATCCGACTGGCCATCTCCGATTCCAAAGGCGGCC
TAAATCTATTGAGCTACTCATCACAGGGTGAGATAATCCGCGAACGGTCG
TGGTTGTCCCATGGCTTTGAGGCTTGGACCTGTGCCTTTGATCGTTGGTC
ACCGCACATTCTGTACAGTGGTGGCGACGATATGCTGCTCATGGCCCACG
ATCTGCGCACCAAGCAGCGTGCGTGGACCAACCGGGCGCACATGGCTGGA
GTCACCTGTCTGCTAAGTCATCCGCGGCACGAAAACCATCTGCTCACGGG
TAGCTATGATGAGCAGTTGCGTCTCTTCGACACCAGATCGATGAAGCGAT
CACTGGCGGAACTGGACTTGAGCGGAGGCATCTGGAGGCTGAAGCCGCAT
CCTGCCCAGCCCGATCTCATCCTGGCCGCCTGCATGTACACCAACTTTAG
C
BS05878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-PA | 1071 | CG3184-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1179 | CG3184-RA | 33..919 | 15..901 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6687856..6688742 | 901..15 | 4435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:58:49 has no hits.
BS05878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:07 Download gff for
BS05878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:36 Download gff for
BS05878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:55:53 Download gff for
BS05878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 24..919 | 5..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:41 Download gff for
BS05878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 24..919 | 5..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:41 Download gff for
BS05878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6687856..6688750 | 5..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:55:53 Download gff for
BS05878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6581889..6582783 | 5..901 | 99 | | Minus |
BS05878.complete Sequence
1103 bp (1103 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635277
> BS05878.complete
GAAGTTATCAGTCGACATGTTTACAACGCTCCACAGCGAGGATACGGAAT
ATTCGGCAGATTCTGTGGAGTGGCTGACACACGATGATGCGGCAACGGGT
TTCTTTGCCTGCGGCACCTATCAGTTGGTCCAGGAGGAGGACGAGCCGGC
GGCGGAGACTTCAGCCAAGCGTCCACGCAAGGGTCGCGTTTATTTATACC
AGTTTGAAGAGGAAAACTGCCGCCTGGAGCGGCTACAGTGCATCGAAACG
TCTGCCATTCTCGACATGAAGTGGCTGCCGGCCTGGAGCAGTGAGTGTAA
TCCCCACCTGGCCACGGTCAACTCTTTAGGCCAGATGGAATTGTACGAGT
TTCTCCAGGATGCGAAGCTACTGCAGAGGCGTACGTGTTTTAGCCTGGCG
GAGCAGGATTCGTCGGAGGAAGCGCCATTGGCGCTGGCCCTAGACTGGCA
ACATGACGGGCAGCACATCCGACTGGCCATCTCCGATTCCAAAGGCGGCC
TAAATCTATTGAGCTACTCATCACAGGGTGAGATAATCCGCGAACGGTCG
TGGTTGTCCCATGGCTTTGAGGCTTGGACCTGTGCCTTTGATCGTTGGTC
ACCGCACATTCTGTACAGTGGTGGCGACGATATGCTGCTCATGGCCCACG
ATCTGCGCACCAAGCAGCGTGCGTGGACCAACCGGGCGCACATGGCTGGA
GTCACCTGTCTGCTAAGTCATCCGCGGCACGAAAACCATCTGCTCACGGG
TAGCTATGATGAGCAGTTGCGTCTCTTCGACACCAGATCGATGAAGCGAT
CACTGGCGGAACTGGACTTGAGCGGAGGCATCTGGAGGCTGAAGCCGCAT
CCTGCCCAGCCCGATCTCATCCTGGCCGCCTGCATGTACACCAACTTTAG
CGTGGTGCAGCTGGATGTCGCGGCACCTGGCCTGAGTTTACTGGGCGCCT
ATGAGGAGCATAAGAGCATCTGCTACGGGGCCGATTGGGCACCATGGAGA
AACAAGGACGATGCGTCCTTGACCATGGCCACTTGCTCCTTTTATGATCA
CACGTTGTGTGTGAGTCGCGTGGATATTAACAAATGAAAGCTTTCTAGAC
CAT
BS05878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1071 | CG3184-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1179 | CG3184-RA | 33..1106 | 15..1088 | 5370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6687669..6688742 | 1088..15 | 5370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:38 has no hits.
BS05878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:17 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 1..1071 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:35 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 20..1102 | 5..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:42 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 41..1104 | 23..1086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:17 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 20..1102 | 5..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:56 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 41..1104 | 23..1086 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:56 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6687671..6688734 | 23..1086 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:42 Download gff for
BS05878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6581704..6582767 | 23..1086 | 100 | | Minus |
BS05878.pep Sequence
Translation from 16 to 1086
> BS05878.pep
MFTTLHSEDTEYSADSVEWLTHDDAATGFFACGTYQLVQEEDEPAAETSA
KRPRKGRVYLYQFEEENCRLERLQCIETSAILDMKWLPAWSSECNPHLAT
VNSLGQMELYEFLQDAKLLQRRTCFSLAEQDSSEEAPLALALDWQHDGQH
IRLAISDSKGGLNLLSYSSQGEIIRERSWLSHGFEAWTCAFDRWSPHILY
SGGDDMLLMAHDLRTKQRAWTNRAHMAGVTCLLSHPRHENHLLTGSYDEQ
LRLFDTRSMKRSLAELDLSGGIWRLKPHPAQPDLILAACMYTNFSVVQLD
VAAPGLSLLGAYEEHKSICYGADWAPWRNKDDASLTMATCSFYDHTLCVS
RVDINK*
BS05878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-PA | 356 | CG3184-PA | 1..356 | 1..356 | 1916 | 100 | Plus |
