Clone Sequence Records
BS05879.3prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-03
> BS05879.3prime
ATGGTCTAGAAAGCTTCTAGCTGGCCTTGCCGCCGTCTGGTTTTATCATA
ATCCTGGGATTGGGCGAATCGTCAAACCAAGACATTACATTGGCGCACAG
CGCAAGGACCTCCATCTGGGGATTCGGGGGAAACACGCGACCAAAGCACT
CCAGCAGCATGGGCTGTCGGCGGACCACCTCGTAGTACTCATCAACCCCA
ATGTTGGTATCCTTGTCCAAGTCGAATTTGAGGAACAGCATCTCCTTCAT
GTCCAAGCGCAGCTCAATGGATTCGTCTTCATCCTCGCTCTCAAAGAACT
TGCCGACGAAGAACCCAACTTGCTCGCCATTCAACTGCTTGGAATCGCTT
TTATCGTAGACCGAGAATGCGAATTCCATTTTCAGCTGAAGATCTTTGGT
GAAGTATACGGTGAAAAGCCGCACAAAGGACTCCAAGTGTATATGCTTGT
CGGAAAAGAAGTCAGGAGGCCTGGAACCTGGTGTATGGGCTATTCTATAC
ACAATGGTCGCAATGAGATCGCGATCCACGATCTCAAACAAGAGCTCCAT
CAGCGCAGAGAGTTGCTGAATGGTCATGTACTTTGCTCTCGGCCCATTGA
CCAGCACAAACTTATGGTAGAGCATTACAATGCTAATCAGCTCGTTATGC
GAGAAGATCGAGTCCTTTGCCAGGCGAGCAATGTCCTTCATATACACGTA
GTTGAAGCGGGCATTCTCCAGAGTGTCCAAGGAGCCGTCCAGGTCCTTCA
TGTCGACTGATAACT
BS05879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-PA | 735 | CG3565-RA | 1..735 | 751..17 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 899 | CG3565-RA | 46..785 | 756..17 | 3685 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24602517..24602913 | 756..360 | 1970 | 99.7 | Minus |
2R | 25286936 | 2R | 24603137..24603374 | 254..17 | 1190 | 100 | Minus |
2R | 25286936 | 2R | 24602968..24603077 | 362..253 | 550 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 242..209 | 107 | 79.4 | Minus |
BS05879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:08 Download gff for
BS05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:37 Download gff for
BS05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:15 Download gff for
BS05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 37..787 | 12..765 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:20 Download gff for
BS05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 37..787 | 12..765 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:20 Download gff for
BS05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24602508..24602911 | 362..765 | 98 | -> | Minus |
2R | 24602969..24603076 | 254..361 | 100 | -> | Minus |
2R | 24603138..24603376 | 12..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:15 Download gff for
BS05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20490031..20490434 | 362..765 | 98 | -> | Minus |
arm_2R | 20490492..20490599 | 254..361 | 100 | -> | Minus |
arm_2R | 20490661..20490899 | 12..253 | 98 | | Minus |
BS05879.5prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-03
> BS05879.5prime
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCTA
GAAGCTTTCTAGACC
BS05879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-PA | 735 | CG3565-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 899 | CG3565-RA | 46..785 | 12..751 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24602517..24602913 | 12..408 | 1970 | 99.7 | Plus |
2R | 25286936 | 2R | 24603137..24603374 | 514..751 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 24602968..24603077 | 406..515 | 550 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 526..559 | 107 | 79.4 | Plus |
BS05879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:09 Download gff for
BS05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:39 Download gff for
BS05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:35 Download gff for
BS05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:52 Download gff for
BS05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:00:52 Download gff for
BS05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24602509..24602911 | 4..406 | 99 | -> | Plus |
2R | 24602969..24603076 | 407..514 | 100 | -> | Plus |
2R | 24603138..24603376 | 515..756 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:35 Download gff for
BS05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20490492..20490599 | 407..514 | 100 | -> | Plus |
arm_2R | 20490032..20490434 | 4..406 | 99 | -> | Plus |
arm_2R | 20490661..20490899 | 515..756 | 98 | | Plus |
BS05879.complete Sequence
767 bp (767 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635278
> BS05879.complete
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCTA
GAAGCTTTCTAGACCAT
BS05879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 735 | CG3565-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 899 | CG3565-RA | 46..785 | 12..751 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24602517..24602913 | 12..408 | 1970 | 99.7 | Plus |
2R | 25286936 | 2R | 24603137..24603374 | 514..751 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 24602968..24603077 | 406..515 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 526..559 | 107 | 79.4 | Plus |
BS05879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:18 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:36 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:04 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 51..785 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:18 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:54 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 51..785 | 17..751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:54 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24602522..24602911 | 17..406 | 100 | -> | Plus |
2R | 24602969..24603076 | 407..514 | 100 | -> | Plus |
2R | 24603138..24603374 | 515..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:04 Download gff for
BS05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20490045..20490434 | 17..406 | 100 | -> | Plus |
arm_2R | 20490492..20490599 | 407..514 | 100 | -> | Plus |
arm_2R | 20490661..20490897 | 515..751 | 100 | | Plus |
BS05879.pep Sequence
Translation from 16 to 750
> BS05879.pep
MKDLDGSLDTLENARFNYVYMKDIARLAKDSIFSHNELISIVMLYHKFVL
VNGPRAKYMTIQQLSALMELLFEIVDRDLIATIVYRIAHTPGSRPPDFFS
DKHIHLESFVRLFTVYFTKDLQLKMEFAFSVYDKSDSKQLNGEQVGFFVG
KFFESEDEDESIELRLDMKEMLFLKFDLDKDTNIGVDEYYEVVRRQPMLL
ECFGRVFPPNPQMEVLALCANVMSWFDDSPNPRIMIKPDGGKAS*
BS05879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-PA | 244 | CG3565-PA | 1..244 | 1..244 | 1266 | 100 | Plus |
sowi-PA | 217 | CG15178-PA | 1..212 | 1..222 | 374 | 36 | Plus |
CG15177-PA | 225 | CG15177-PA | 1..215 | 1..224 | 358 | 36.4 | Plus |
sunz-PA | 220 | CG15179-PA | 1..214 | 1..226 | 356 | 37.6 | Plus |
CG15177-PB | 217 | CG15177-PB | 1..207 | 1..224 | 324 | 35.1 | Plus |