Clone BS05879 Report

Search the DGRC for BS05879

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG3565-RA
Protein status:BS05879.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05879.3prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-03

> BS05879.3prime
ATGGTCTAGAAAGCTTCTAGCTGGCCTTGCCGCCGTCTGGTTTTATCATA
ATCCTGGGATTGGGCGAATCGTCAAACCAAGACATTACATTGGCGCACAG
CGCAAGGACCTCCATCTGGGGATTCGGGGGAAACACGCGACCAAAGCACT
CCAGCAGCATGGGCTGTCGGCGGACCACCTCGTAGTACTCATCAACCCCA
ATGTTGGTATCCTTGTCCAAGTCGAATTTGAGGAACAGCATCTCCTTCAT
GTCCAAGCGCAGCTCAATGGATTCGTCTTCATCCTCGCTCTCAAAGAACT
TGCCGACGAAGAACCCAACTTGCTCGCCATTCAACTGCTTGGAATCGCTT
TTATCGTAGACCGAGAATGCGAATTCCATTTTCAGCTGAAGATCTTTGGT
GAAGTATACGGTGAAAAGCCGCACAAAGGACTCCAAGTGTATATGCTTGT
CGGAAAAGAAGTCAGGAGGCCTGGAACCTGGTGTATGGGCTATTCTATAC
ACAATGGTCGCAATGAGATCGCGATCCACGATCTCAAACAAGAGCTCCAT
CAGCGCAGAGAGTTGCTGAATGGTCATGTACTTTGCTCTCGGCCCATTGA
CCAGCACAAACTTATGGTAGAGCATTACAATGCTAATCAGCTCGTTATGC
GAGAAGATCGAGTCCTTTGCCAGGCGAGCAATGTCCTTCATATACACGTA
GTTGAAGCGGGCATTCTCCAGAGTGTCCAAGGAGCCGTCCAGGTCCTTCA
TGTCGACTGATAACT

BS05879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-PA 735 CG3565-RA 1..735 751..17 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 899 CG3565-RA 46..785 756..17 3685 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24602517..24602913 756..360 1970 99.7 Minus
2R 25286936 2R 24603137..24603374 254..17 1190 100 Minus
2R 25286936 2R 24602968..24603077 362..253 550 100 Minus
Blast to na_te.dros performed 2015-02-11 17:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 755..788 242..209 107 79.4 Minus

BS05879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:08 Download gff for BS05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:37 Download gff for BS05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:15 Download gff for BS05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 37..787 12..765 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:20 Download gff for BS05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 37..787 12..765 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:20 Download gff for BS05879.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24602508..24602911 362..765 98 -> Minus
2R 24602969..24603076 254..361 100 -> Minus
2R 24603138..24603376 12..253 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:15 Download gff for BS05879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20490031..20490434 362..765 98 -> Minus
arm_2R 20490492..20490599 254..361 100 -> Minus
arm_2R 20490661..20490899 12..253 98   Minus

BS05879.5prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-03

> BS05879.5prime
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCTA
GAAGCTTTCTAGACC

BS05879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-PA 735 CG3565-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 899 CG3565-RA 46..785 12..751 3685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24602517..24602913 12..408 1970 99.7 Plus
2R 25286936 2R 24603137..24603374 514..751 1190 100 Plus
2R 25286936 2R 24602968..24603077 406..515 550 100 Plus
Blast to na_te.dros performed 2015-02-12 07:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 755..788 526..559 107 79.4 Plus

BS05879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:09 Download gff for BS05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:39 Download gff for BS05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:35 Download gff for BS05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:52 Download gff for BS05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:00:52 Download gff for BS05879.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24602509..24602911 4..406 99 -> Plus
2R 24602969..24603076 407..514 100 -> Plus
2R 24603138..24603376 515..756 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:35 Download gff for BS05879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20490492..20490599 407..514 100 -> Plus
arm_2R 20490032..20490434 4..406 99 -> Plus
arm_2R 20490661..20490899 515..756 98   Plus

BS05879.complete Sequence

767 bp (767 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635278

> BS05879.complete
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCTA
GAAGCTTTCTAGACCAT

BS05879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 735 CG3565-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 899 CG3565-RA 46..785 12..751 3685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24602517..24602913 12..408 1970 99.7 Plus
2R 25286936 2R 24603137..24603374 514..751 1190 100 Plus
2R 25286936 2R 24602968..24603077 406..515 550 100 Plus
Blast to na_te.dros performed 2014-11-26 22:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 755..788 526..559 107 79.4 Plus

BS05879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:18 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:36 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:04 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 51..785 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:18 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:54 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 51..785 17..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:54 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24602522..24602911 17..406 100 -> Plus
2R 24602969..24603076 407..514 100 -> Plus
2R 24603138..24603374 515..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:04 Download gff for BS05879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20490045..20490434 17..406 100 -> Plus
arm_2R 20490492..20490599 407..514 100 -> Plus
arm_2R 20490661..20490897 515..751 100   Plus

BS05879.pep Sequence

Translation from 16 to 750

> BS05879.pep
MKDLDGSLDTLENARFNYVYMKDIARLAKDSIFSHNELISIVMLYHKFVL
VNGPRAKYMTIQQLSALMELLFEIVDRDLIATIVYRIAHTPGSRPPDFFS
DKHIHLESFVRLFTVYFTKDLQLKMEFAFSVYDKSDSKQLNGEQVGFFVG
KFFESEDEDESIELRLDMKEMLFLKFDLDKDTNIGVDEYYEVVRRQPMLL
ECFGRVFPPNPQMEVLALCANVMSWFDDSPNPRIMIKPDGGKAS*

BS05879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-PA 244 CG3565-PA 1..244 1..244 1266 100 Plus
sowi-PA 217 CG15178-PA 1..212 1..222 374 36 Plus
CG15177-PA 225 CG15177-PA 1..215 1..224 358 36.4 Plus
sunz-PA 220 CG15179-PA 1..214 1..226 356 37.6 Plus
CG15177-PB 217 CG15177-PB 1..207 1..224 324 35.1 Plus