Clone BS05880 Report

Search the DGRC for BS05880

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1394-RA
Protein status:BS05880.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05880.3prime Sequence

534 bp (533 high quality bases) assembled on 2005-12-03

> BS05880.3prime
ATGGTCTAGAAAGCTTCTACCAGAAGCCACCCTTGGATGCACTGCCTCCG
CCGTAGTTCATGCTCATGTCCATGCCGTTGTAGGCGCAGAAGGCTTCGCC
ATTGTCGATGCACGGTTCATTTCGTCCGGGTATGTCTCCATATATTGAAC
GGTCCACGGGTGGCGGCACTATATGCTGGGCTCCTGTAATGGGCATGCCA
CACGACATGGCACCCGGCATGGCACCCGGCATGGCACCCGACATGGCACC
CGGCATGACGCCCGGCATGGCACCCGGCATGGCAGCCGGCATGCCACCGG
CTCCTCCGGCGTATGGTAGCATGGAGTGTGCCTGAGCTGCGCCCTGGCTA
GGCCAACCTCCTAGTCCGCCGGCTGATCCTAATCCTGGTGCTGCTGCTGT
TGCTGATAGTGGTGGTGGAGCGGCTGCTCCAGCGGCAGAGTGCTGCATGA
AGTCACCCATCTGCGGATAAACGGGAGCATTCAACGGCTGGCCATTCCAG
TACGAAAACGAATTCGACATGTCGACTGATAACT

BS05880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-PA 504 CG1394-RA 1..504 520..17 2520 100 Minus
CG15200-PA 342 CG15200-RA 253..309 118..62 160 91.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 868 CG1394-RB 170..673 520..17 2520 100 Minus
CG1394-RA 842 CG1394-RA 170..673 520..17 2520 100 Minus
CG15200-RA 546 CG15200-RA 378..434 118..62 210 91.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11170006..11170509 17..520 2520 100 Plus
X 23542271 X 11183308..11183364 118..62 210 91.2 Minus
Blast to na_te.dros performed 2015-02-12 19:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6838 432..370 153 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2411 435..370 150 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2379 428..372 141 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2417 438..370 138 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2363 427..370 137 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6885 446..359 131 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6763 460..370 129 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 438..370 129 65.2 Minus
roo 9092 roo DM_ROO 9092bp 1064..1132 438..370 129 65.2 Minus
roo 9092 roo DM_ROO 9092bp 1090..1163 446..372 129 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2852 436..370 128 65.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6914 438..372 128 65.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6817 432..370 126 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6784 432..370 126 66.7 Minus
roo 9092 roo DM_ROO 9092bp 1082..1144 432..370 126 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 435..372 122 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 446..358 119 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6833..6899 438..372 119 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6794 432..372 116 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6850 445..370 116 63.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2422 446..386 113 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1597 428..358 109 63.4 Minus

BS05880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:10 Download gff for BS05880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:40 Download gff for BS05880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:39 Download gff for BS05880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..643 17..529 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:47 Download gff for BS05880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 163..673 17..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:47 Download gff for BS05880.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11170006..11170516 17..529 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:39 Download gff for BS05880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11064039..11064549 17..529 99   Plus

BS05880.5prime Sequence

534 bp (533 high quality bases) assembled on 2005-12-03

> BS05880.5prime
GAAGTTATCAGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGC
CGTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCT
GCCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACC
AGGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAG
CTCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCG
GCTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGG
TGCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTA
CAGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGA
GACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTG
CGCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCAT
CCAAGGGTGGCTTCTGGTAGAAGCTTTCTAGACC

BS05880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-PA 504 CG1394-RA 1..504 17..520 2520 100 Plus
CG15200-PA 342 CG15200-RA 253..309 419..475 160 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 868 CG1394-RB 170..673 17..520 2520 100 Plus
CG1394-RA 842 CG1394-RA 170..673 17..520 2520 100 Plus
CG15200-RA 546 CG15200-RA 378..434 419..475 210 91.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11170006..11170509 520..17 2520 100 Minus
X 23542271 X 11183308..11183364 419..475 210 91.2 Plus
Blast to na_te.dros performed 2015-02-12 13:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6838 105..167 153 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2411 102..167 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2379 109..165 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2417 99..167 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2363 110..167 137 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6885 91..178 131 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6763 77..167 129 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 99..167 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1064..1132 99..167 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1090..1163 91..165 129 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2852 101..167 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6914 99..165 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6784 105..167 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6817 105..167 126 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1082..1144 105..167 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 102..165 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 91..179 119 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6833..6899 99..165 119 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6794 105..165 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6850 92..167 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2422 91..151 113 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1597 109..179 109 63.4 Plus

BS05880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:11 Download gff for BS05880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:41 Download gff for BS05880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:54 Download gff for BS05880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..643 8..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:57:31 Download gff for BS05880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 163..673 8..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:57:31 Download gff for BS05880.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11170006..11170516 8..520 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:54 Download gff for BS05880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11064039..11064549 8..520 99   Minus

BS05880.complete Sequence

536 bp (536 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635279

> BS05880.complete
GAAGTTATCAGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGC
CGTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCT
GCCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACC
AGGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAG
CTCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCG
GCTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGG
TGCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTA
CAGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGA
GACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTG
CGCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCAT
CCAAGGGTGGCTTCTGGTAGAAGCTTTCTAGACCAT

BS05880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 504 CG1394-PB 1..504 17..520 2520 100 Plus
CG1394-RA 504 CG1394-PA 1..504 17..520 2520 100 Plus
CG15200-RA 342 CG15200-PA 253..309 419..475 210 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 868 CG1394-RB 170..673 17..520 2520 100 Plus
CG1394-RA 842 CG1394-RA 170..673 17..520 2520 100 Plus
CG15200-RA 546 CG15200-RA 378..434 419..475 210 91.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11170006..11170509 520..17 2520 100 Minus
X 23542271 X 11183308..11183364 419..475 210 91.2 Plus
Blast to na_te.dros performed 2014-11-27 08:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6838 105..167 153 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2411 102..167 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2379 109..165 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2417 99..167 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2363 110..167 137 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6885 91..178 131 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6763 77..167 129 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 99..167 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1090..1163 91..165 129 65.3 Plus
roo 9092 roo DM_ROO 9092bp 1064..1132 99..167 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2852 101..167 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6914 99..165 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6784 105..167 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6817 105..167 126 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1082..1144 105..167 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 102..165 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 91..179 119 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6833..6899 99..165 119 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6794 105..165 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6850 92..167 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2422 91..151 113 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1597 109..179 109 63.4 Plus

BS05880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:19 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:38 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..643 8..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:27 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 140..643 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:19 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..643 8..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:28 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 170..673 17..520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:28 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
X 11170006..11170509 17..520 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:27 Download gff for BS05880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11064039..11064542 17..520 100   Minus

BS05880.pep Sequence

Translation from 16 to 519

> BS05880.pep
MSNSFSYWNGQPLNAPVYPQMGDFMQHSAAGAAAPPPLSATAAAPGLGSA
GGLGGWPSQGAAQAHSMLPYAGGAGGMPAAMPGAMPGVMPGAMSGAMPGA
MPGAMSCGMPITGAQHIVPPPVDRSIYGDIPGRNEPCIDNGEAFCAYNGM
DMSMNYGGGSASKGGFW*

BS05880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-PB 167 CG1394-PB 1..167 1..167 920 100 Plus
CG1394-PA 167 CG1394-PA 1..167 1..167 920 100 Plus