Clone Sequence Records
BS05880.3prime Sequence
534 bp (533 high quality bases) assembled on 2005-12-03
> BS05880.3prime
ATGGTCTAGAAAGCTTCTACCAGAAGCCACCCTTGGATGCACTGCCTCCG
CCGTAGTTCATGCTCATGTCCATGCCGTTGTAGGCGCAGAAGGCTTCGCC
ATTGTCGATGCACGGTTCATTTCGTCCGGGTATGTCTCCATATATTGAAC
GGTCCACGGGTGGCGGCACTATATGCTGGGCTCCTGTAATGGGCATGCCA
CACGACATGGCACCCGGCATGGCACCCGGCATGGCACCCGACATGGCACC
CGGCATGACGCCCGGCATGGCACCCGGCATGGCAGCCGGCATGCCACCGG
CTCCTCCGGCGTATGGTAGCATGGAGTGTGCCTGAGCTGCGCCCTGGCTA
GGCCAACCTCCTAGTCCGCCGGCTGATCCTAATCCTGGTGCTGCTGCTGT
TGCTGATAGTGGTGGTGGAGCGGCTGCTCCAGCGGCAGAGTGCTGCATGA
AGTCACCCATCTGCGGATAAACGGGAGCATTCAACGGCTGGCCATTCCAG
TACGAAAACGAATTCGACATGTCGACTGATAACT
BS05880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-PA | 504 | CG1394-RA | 1..504 | 520..17 | 2520 | 100 | Minus |
CG15200-PA | 342 | CG15200-RA | 253..309 | 118..62 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 868 | CG1394-RB | 170..673 | 520..17 | 2520 | 100 | Minus |
CG1394-RA | 842 | CG1394-RA | 170..673 | 520..17 | 2520 | 100 | Minus |
CG15200-RA | 546 | CG15200-RA | 378..434 | 118..62 | 210 | 91.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11170006..11170509 | 17..520 | 2520 | 100 | Plus |
X | 23542271 | X | 11183308..11183364 | 118..62 | 210 | 91.2 | Minus |
Blast to na_te.dros performed 2015-02-12 19:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 432..370 | 153 | 71.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 435..370 | 150 | 69.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 428..372 | 141 | 71.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 438..370 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 427..370 | 137 | 70.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 446..359 | 131 | 62.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 460..370 | 129 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 438..370 | 129 | 65.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 438..370 | 129 | 65.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 446..372 | 129 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 436..370 | 128 | 65.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 438..372 | 128 | 65.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 432..370 | 126 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 432..370 | 126 | 66.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 432..370 | 126 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 435..372 | 122 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2852 | 446..358 | 119 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 438..372 | 119 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 432..372 | 116 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 445..370 | 116 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 446..386 | 113 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 428..358 | 109 | 63.4 | Minus |
BS05880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:10 Download gff for
BS05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:40 Download gff for
BS05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:39 Download gff for
BS05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..643 | 17..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:47 Download gff for
BS05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 163..673 | 17..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:47 Download gff for
BS05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11170006..11170516 | 17..529 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:39 Download gff for
BS05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11064039..11064549 | 17..529 | 99 | | Plus |
BS05880.5prime Sequence
534 bp (533 high quality bases) assembled on 2005-12-03
> BS05880.5prime
GAAGTTATCAGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGC
CGTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCT
GCCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACC
AGGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAG
CTCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCG
GCTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGG
TGCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTA
CAGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGA
GACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTG
CGCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCAT
CCAAGGGTGGCTTCTGGTAGAAGCTTTCTAGACC
BS05880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-PA | 504 | CG1394-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG15200-PA | 342 | CG15200-RA | 253..309 | 419..475 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 868 | CG1394-RB | 170..673 | 17..520 | 2520 | 100 | Plus |
CG1394-RA | 842 | CG1394-RA | 170..673 | 17..520 | 2520 | 100 | Plus |
CG15200-RA | 546 | CG15200-RA | 378..434 | 419..475 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11170006..11170509 | 520..17 | 2520 | 100 | Minus |
X | 23542271 | X | 11183308..11183364 | 419..475 | 210 | 91.2 | Plus |
Blast to na_te.dros performed 2015-02-12 13:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 105..167 | 153 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 102..167 | 150 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 109..165 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 99..167 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 110..167 | 137 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 91..178 | 131 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 77..167 | 129 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 99..167 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 99..167 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 91..165 | 129 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 101..167 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 99..165 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 105..167 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 105..167 | 126 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 105..167 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 102..165 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2852 | 91..179 | 119 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 99..165 | 119 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 105..165 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 92..167 | 116 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 91..151 | 113 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 109..179 | 109 | 63.4 | Plus |
BS05880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:11 Download gff for
BS05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:41 Download gff for
BS05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:54 Download gff for
BS05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..643 | 8..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:57:31 Download gff for
BS05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 163..673 | 8..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:57:31 Download gff for
BS05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11170006..11170516 | 8..520 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:54 Download gff for
BS05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11064039..11064549 | 8..520 | 99 | | Minus |
BS05880.complete Sequence
536 bp (536 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635279
> BS05880.complete
GAAGTTATCAGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGC
CGTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCT
GCCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACC
AGGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAG
CTCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCG
GCTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGG
TGCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTA
CAGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGA
GACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTG
CGCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCAT
CCAAGGGTGGCTTCTGGTAGAAGCTTTCTAGACCAT
BS05880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 504 | CG1394-PB | 1..504 | 17..520 | 2520 | 100 | Plus |
CG1394-RA | 504 | CG1394-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG15200-RA | 342 | CG15200-PA | 253..309 | 419..475 | 210 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 868 | CG1394-RB | 170..673 | 17..520 | 2520 | 100 | Plus |
CG1394-RA | 842 | CG1394-RA | 170..673 | 17..520 | 2520 | 100 | Plus |
CG15200-RA | 546 | CG15200-RA | 378..434 | 419..475 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11170006..11170509 | 520..17 | 2520 | 100 | Minus |
X | 23542271 | X | 11183308..11183364 | 419..475 | 210 | 91.2 | Plus |
Blast to na_te.dros performed 2014-11-27 08:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 105..167 | 153 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 102..167 | 150 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 109..165 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 99..167 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 110..167 | 137 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 91..178 | 131 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 77..167 | 129 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 99..167 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 91..165 | 129 | 65.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 99..167 | 129 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 101..167 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 99..165 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 105..167 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 105..167 | 126 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 105..167 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 102..165 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2852 | 91..179 | 119 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 99..165 | 119 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 105..165 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 92..167 | 116 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 91..151 | 113 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 109..179 | 109 | 63.4 | Plus |
BS05880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:19 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:38 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..643 | 8..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:27 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 140..643 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:19 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..643 | 8..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:28 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 170..673 | 17..520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:28 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11170006..11170509 | 17..520 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:27 Download gff for
BS05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11064039..11064542 | 17..520 | 100 | | Minus |
BS05880.pep Sequence
Translation from 16 to 519
> BS05880.pep
MSNSFSYWNGQPLNAPVYPQMGDFMQHSAAGAAAPPPLSATAAAPGLGSA
GGLGGWPSQGAAQAHSMLPYAGGAGGMPAAMPGAMPGVMPGAMSGAMPGA
MPGAMSCGMPITGAQHIVPPPVDRSIYGDIPGRNEPCIDNGEAFCAYNGM
DMSMNYGGGSASKGGFW*
BS05880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-PB | 167 | CG1394-PB | 1..167 | 1..167 | 920 | 100 | Plus |
CG1394-PA | 167 | CG1394-PA | 1..167 | 1..167 | 920 | 100 | Plus |