Clone Sequence Records
BS05881.3prime Sequence
570 bp (569 high quality bases) assembled on 2005-12-03
> BS05881.3prime
ATGGTCTAGAAAGCTTCTAGCCTACGATCGTTTTATTCCGAATTGGCACA
TAGTCATCATACTGGGCCTGGTAATAATTGGCGGCAATGGGCTCGCCCAA
TCCATGTTTGGCGGCAAAGTCCCGGGCGTTGAAGTTCAAACGGCCTGTGC
GAGTAGTATTGGATATAGTGGGCGTCTCCTCGATCTTGTTCTCCTGGCGA
TAGAGGAGGAAAATATACCGATGCAGGCCAGTGTCCTTGGGCGGTCCAGA
TCCAACGTAGTCCGCTAGGGAGTGGCCACCAGAAGGATTCTCATTGCTGC
CGGGAATGTTGACCACAGACCAGTGCAGAATCTCACGGTACTTGGGATCT
TGACGAGTCGGTGCATCGGGATCCACCATGAGCAGGGTCAATAGGTTGGA
CTTTCCCTCCAGCCCAGACCAGCTGACAATCGGTTGGTCCTTCACCTGGG
TGGGGGTTAGCTCGTTGCCCTGCTTGACCTCCAAGTCATCGCCATAGATG
ACCTTAATGGTGCCAGCGGGAACCGCATCCAGCACATCGGGTACTATGTC
ATCCATGTCGACTGATAACT
BS05881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-PA | 540 | CG7054-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 893 | CG7054-RA | 289..831 | 558..16 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22465273..22465675 | 558..156 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 22465737..22465876 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:39:02 has no hits.
BS05881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:12 Download gff for
BS05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:43 Download gff for
BS05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:35 Download gff for
BS05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 10..567 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:04 Download gff for
BS05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 10..567 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:04 Download gff for
BS05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22465265..22465675 | 156..567 | 99 | -> | Minus |
3R | 22465737..22465879 | 10..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:35 Download gff for
BS05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18290987..18291397 | 156..567 | 99 | -> | Minus |
arm_3R | 18291459..18291601 | 10..155 | 97 | | Minus |
BS05881.5prime Sequence
570 bp (569 high quality bases) assembled on 2005-12-03
> BS05881.5prime
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCTAGAAGCTTTCTAGACC
BS05881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-PA | 540 | CG7054-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 893 | CG7054-RA | 289..831 | 15..557 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22465273..22465675 | 15..417 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 22465737..22465876 | 418..557 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:03:56 has no hits.
BS05881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:14 Download gff for
BS05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:44 Download gff for
BS05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:47 Download gff for
BS05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 6..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:23 Download gff for
BS05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 6..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:23 Download gff for
BS05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22465265..22465675 | 6..417 | 99 | -> | Plus |
3R | 22465737..22465879 | 418..563 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:47 Download gff for
BS05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18290987..18291397 | 6..417 | 99 | -> | Plus |
arm_3R | 18291459..18291601 | 418..563 | 97 | | Plus |
BS05881.complete Sequence
572 bp (572 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635280
> BS05881.complete
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCTAGAAGCTTTCTAGACCAT
BS05881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 540 | CG7054-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 893 | CG7054-RA | 289..831 | 15..557 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22465273..22465675 | 15..417 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 22465737..22465876 | 418..557 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:11 has no hits.
BS05881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:20 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:39 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 353..906 | 6..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:04 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 291..830 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:20 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 353..906 | 6..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:26 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 291..830 | 17..556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:26 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22465275..22465675 | 17..417 | 100 | -> | Plus |
3R | 22465737..22465875 | 418..556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:04 Download gff for
BS05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18290997..18291397 | 17..417 | 100 | -> | Plus |
arm_3R | 18291459..18291597 | 418..556 | 100 | | Plus |
BS05881.pep Sequence
Translation from 16 to 555
> BS05881.pep
MDDIVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE
GKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADY
VGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAK
HGLGEPIAANYYQAQYDDYVPIRNKTIVG*
BS05881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-PA | 179 | CG7054-PA | 1..179 | 1..179 | 950 | 100 | Plus |
Pebp1-PA | 176 | CG18594-PA | 6..175 | 4..177 | 477 | 49.4 | Plus |
CG17919-PA | 202 | CG17919-PA | 29..199 | 4..177 | 457 | 50.3 | Plus |
CG6180-PA | 257 | CG6180-PA | 85..255 | 4..177 | 442 | 52.6 | Plus |
CG10298-PA | 187 | CG10298-PA | 13..185 | 4..179 | 422 | 48.6 | Plus |