Clone BS05881 Report

Search the DGRC for BS05881

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG7054-RA
Protein status:BS05881.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05881.3prime Sequence

570 bp (569 high quality bases) assembled on 2005-12-03

> BS05881.3prime
ATGGTCTAGAAAGCTTCTAGCCTACGATCGTTTTATTCCGAATTGGCACA
TAGTCATCATACTGGGCCTGGTAATAATTGGCGGCAATGGGCTCGCCCAA
TCCATGTTTGGCGGCAAAGTCCCGGGCGTTGAAGTTCAAACGGCCTGTGC
GAGTAGTATTGGATATAGTGGGCGTCTCCTCGATCTTGTTCTCCTGGCGA
TAGAGGAGGAAAATATACCGATGCAGGCCAGTGTCCTTGGGCGGTCCAGA
TCCAACGTAGTCCGCTAGGGAGTGGCCACCAGAAGGATTCTCATTGCTGC
CGGGAATGTTGACCACAGACCAGTGCAGAATCTCACGGTACTTGGGATCT
TGACGAGTCGGTGCATCGGGATCCACCATGAGCAGGGTCAATAGGTTGGA
CTTTCCCTCCAGCCCAGACCAGCTGACAATCGGTTGGTCCTTCACCTGGG
TGGGGGTTAGCTCGTTGCCCTGCTTGACCTCCAAGTCATCGCCATAGATG
ACCTTAATGGTGCCAGCGGGAACCGCATCCAGCACATCGGGTACTATGTC
ATCCATGTCGACTGATAACT

BS05881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-PA 540 CG7054-RA 1..540 556..17 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 893 CG7054-RA 289..831 558..16 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22465273..22465675 558..156 2015 100 Minus
3R 32079331 3R 22465737..22465876 155..16 700 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:39:02 has no hits.

BS05881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:12 Download gff for BS05881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:43 Download gff for BS05881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:35 Download gff for BS05881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 10..567 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:04 Download gff for BS05881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 10..567 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:04 Download gff for BS05881.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22465265..22465675 156..567 99 -> Minus
3R 22465737..22465879 10..155 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:35 Download gff for BS05881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18290987..18291397 156..567 99 -> Minus
arm_3R 18291459..18291601 10..155 97   Minus

BS05881.5prime Sequence

570 bp (569 high quality bases) assembled on 2005-12-03

> BS05881.5prime
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCTAGAAGCTTTCTAGACC

BS05881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-PA 540 CG7054-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 893 CG7054-RA 289..831 15..557 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22465273..22465675 15..417 2015 100 Plus
3R 32079331 3R 22465737..22465876 418..557 700 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:03:56 has no hits.

BS05881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:14 Download gff for BS05881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:44 Download gff for BS05881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:47 Download gff for BS05881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 6..563 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:23 Download gff for BS05881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 6..563 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:23 Download gff for BS05881.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22465265..22465675 6..417 99 -> Plus
3R 22465737..22465879 418..563 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:47 Download gff for BS05881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18290987..18291397 6..417 99 -> Plus
arm_3R 18291459..18291601 418..563 97   Plus

BS05881.complete Sequence

572 bp (572 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635280

> BS05881.complete
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCTAGAAGCTTTCTAGACCAT

BS05881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 540 CG7054-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 893 CG7054-RA 289..831 15..557 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22465273..22465675 15..417 2015 100 Plus
3R 32079331 3R 22465737..22465876 418..557 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:40:11 has no hits.

BS05881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:20 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:39 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 353..906 6..563 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:04 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 291..830 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:20 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 353..906 6..563 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:26 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 291..830 17..556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:26 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22465275..22465675 17..417 100 -> Plus
3R 22465737..22465875 418..556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:04 Download gff for BS05881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18290997..18291397 17..417 100 -> Plus
arm_3R 18291459..18291597 418..556 100   Plus

BS05881.pep Sequence

Translation from 16 to 555

> BS05881.pep
MDDIVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE
GKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADY
VGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAK
HGLGEPIAANYYQAQYDDYVPIRNKTIVG*

BS05881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-PA 179 CG7054-PA 1..179 1..179 950 100 Plus
Pebp1-PA 176 CG18594-PA 6..175 4..177 477 49.4 Plus
CG17919-PA 202 CG17919-PA 29..199 4..177 457 50.3 Plus
CG6180-PA 257 CG6180-PA 85..255 4..177 442 52.6 Plus
CG10298-PA 187 CG10298-PA 13..185 4..179 422 48.6 Plus