Clone Sequence Records
BS05882.3prime Sequence
826 bp (746 high quality bases) assembled on 2005-12-03
> BS05882.3prime
ATGGTCTAGAAAGCTTTCAAAAAGTGGGATATTGGGGAAGTGATGCCACT
CCACACATGTTGTTGGCGTTCCGAGCTAGCTTTAAGTAGCCACTTTCTCC
CCAATCGGTTCCATAGGAGTTCTTTATTATCCAGTAGTCTCCCCACTTCC
GATGGGTTCCAAAGCCGACTAAAAGAACGGAGTGTGTAAGGTCCTGTCTC
TTAGATCTGCACGCCGGAATACTGAGGACTCCACCGGAGTACTGATCGAA
TTCCTCGTGGAGATGGTCAATGGACACCGCCACGGGTCCAATGTTGTAGA
CCACCTCCGCCAGTTCCCGTTCATCGTAGTTGCCGAGAGTGACGTAGCCC
GACAATGTGCCTGCACTTCTGTCGCTTTTCCACAGGCATTCTCCTGATAC
AGGCTCGTACGGATAGGATTCCTTTGTGGCGATGCCATGGTCCCTGGTGT
AGTTAAAGGCCACGCTCACCCAACCACCGCTGCAGCCGTTATTCGGATAG
GGAACACAGTCCACCAAGTGCTTGGGTGAAAGGGGAACCAGATTTCCATA
CTTCTTCGCCATATGTGCCTCAAGAACACCCGAGGTGGAGAAGGCCCAGC
AGCTCAGGCACTCGGTGCCCTGGTCTCCCACTGGCGATATATAGCCGTAC
TGCCGCCAGTCGATTCCTTCGGTGATCTGGTCGTACCTCTTGTAGTTTAC
AGTCTCCGTAAGTGCATTGGTACTCGTCTCCAGCGGCGCTGGGATCGACG
AGCGATAATTGAAGAGGATTCTCTGATCTGTGTCGGAGAACTTGTTTAGT
CCCATCTTGAATGCAACCTTTCCCTG
BS05882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-PA | 1011 | CG11459-RA | 202..1011 | 826..17 | 4050 | 100 | Minus |
CG1075-PA | 825 | CG1075-RA | 633..746 | 185..72 | 295 | 90.3 | Minus |
CG1075-PA | 825 | CG1075-RA | 491..575 | 327..243 | 250 | 91.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-RB | 1413 | CG11459-RB | 238..1048 | 826..16 | 4055 | 100 | Minus |
CG11459-RA | 1123 | CG11459-RA | 238..1048 | 826..16 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6026191..6027001 | 16..826 | 4055 | 100 | Plus |
3R | 32079331 | 3R | 6028003..6028621 | 645..27 | 1380 | 82.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:33:13 has no hits.
BS05882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:15 Download gff for
BS05882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-PA | 202..1011 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:46 Download gff for
BS05882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-PA | 202..1011 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:34 Download gff for
BS05882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 238..1048 | 16..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:28 Download gff for
BS05882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 238..1048 | 16..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:28 Download gff for
BS05882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6026191..6027001 | 16..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:34 Download gff for
BS05882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1851913..1852723 | 16..826 | 100 | | Plus |
BS05882.5prime Sequence
901 bp (834 high quality bases) assembled on 2005-12-03
> BS05882.5prime
GAAGTTATCAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTC
TAATCCTTCTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACG
GAGTGGGACCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGA
CAAATACCACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCC
ACAACCAGCTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAAC
AAGTTCTCCGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGAT
CCCAGCGCCGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACT
ACAAGAGGTACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGC
TATATATCGCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGC
CTTCTCCACCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAA
ATCTGGTTCCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCG
AATAACGGCTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAG
GGACCATGGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAG
GAGAATGCCTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTAC
GTCACTCTCGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAA
CATTGGACCCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATC
AGTACTCCGGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAG
GACCTTACACACTCCCGTCTTTTAGTCGGCTTTGGAACCCATCGGAAGTG
G
BS05882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-PA | 1011 | CG11459-RA | 1..885 | 17..901 | 4375 | 99.7 | Plus |
CG1075-PA | 825 | CG1075-RA | 491..575 | 717..801 | 250 | 91.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-RB | 1413 | CG11459-RB | 37..921 | 17..901 | 4395 | 99.8 | Plus |
CG11459-RA | 1123 | CG11459-RA | 37..921 | 17..901 | 4395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6026318..6027202 | 901..17 | 4395 | 99.8 | Minus |
3R | 32079331 | 3R | 6028003..6028504 | 399..901 | 980 | 80.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:06:10 has no hits.
BS05882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:16 Download gff for
BS05882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:47 Download gff for
BS05882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:47:26 Download gff for
BS05882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 26..921 | 7..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:43 Download gff for
BS05882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 26..921 | 7..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:43 Download gff for
BS05882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6026318..6027213 | 7..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:47:26 Download gff for
BS05882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1852040..1852935 | 7..901 | 99 | | Minus |
BS05882.complete Sequence
1043 bp (1043 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635281
> BS05882.complete
GAAGTTATCAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTC
TAATCCTTCTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACG
GAGTGGGACCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGA
CAAATACCACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCC
ACAACCAGCTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAAC
AAGTTCTCCGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGAT
CCCAGCGCCGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACT
ACAAGAGGTACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGC
TATATATCGCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGC
CTTCTCCACCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAA
ATCTGGTTCCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCG
AATAACGGCTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAG
GGACCATGGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAG
GAGAATGCCTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTAC
GTCACTCTCGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAA
CATTGGACCCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATC
AGTACTCCGGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAG
GACCTTACACACTCCGTTCTTTTAGTCGGCTTTGGAACCCATCGGAAGTG
GGGAGACTACTGGATAATAAAGAACTCCTATGGAACCGATTGGGGAGAAA
GTGGCTACTTAAAGCTAGCTCGGAACGCCAACAACATGTGTGGAGTGGCA
TCACTTCCCCAATATCCCACTTTTTGAAAGCTTTCTAGACCAT
BS05882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-RB | 1011 | CG11459-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG11459-RA | 1011 | CG11459-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-RB | 1413 | CG11459-RB | 37..1048 | 17..1028 | 5060 | 100 | Plus |
CG11459-RA | 1123 | CG11459-RA | 37..1048 | 17..1028 | 5060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6026191..6027202 | 1028..17 | 5060 | 100 | Minus |
3R | 32079331 | 3R | 6028003..6028621 | 399..1017 | 1380 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:02 has no hits.
BS05882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:22 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:41 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 28..1050 | 7..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:36 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 37..1046 | 17..1026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:22 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 28..1050 | 7..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:40 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11459-RA | 37..1046 | 17..1026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:40 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6026193..6027202 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:36 Download gff for
BS05882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1851915..1852924 | 17..1026 | 100 | | Minus |
BS05882.pep Sequence
Translation from 16 to 1026
> BS05882.pep
MGTPRLTVVHGLILLLLVELGLTAVSDTEWDQYKAKYNKQYRNRDKYHRA
LYEQRVLAVESHNQLYLQGKVAFKMGLNKFSDTDQRILFNYRSSIPAPLE
TSTNALTETVNYKRYDQITEGIDWRQYGYISPVGDQGTECLSCWAFSTSG
VLEAHMAKKYGNLVPLSPKHLVDCVPYPNNGCSGGWVSVAFNYTRDHGIA
TKESYPYEPVSGECLWKSDRSAGTLSGYVTLGNYDERELAEVVYNIGPVA
VSIDHLHEEFDQYSGGVLSIPACRSKRQDLTHSVLLVGFGTHRKWGDYWI
IKNSYGTDWGESGYLKLARNANNMCGVASLPQYPTF*
BS05882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11459-PB | 336 | CG11459-PB | 1..336 | 1..336 | 1818 | 100 | Plus |
CG11459-PA | 336 | CG11459-PA | 1..336 | 1..336 | 1818 | 100 | Plus |
Cp1-PC | 371 | CG6692-PC | 30..369 | 3..334 | 603 | 37.9 | Plus |
Cp1-PA | 341 | CG6692-PA | 2..339 | 5..334 | 600 | 37.8 | Plus |
Cp1-PE | 338 | CG6692-PE | 36..336 | 38..334 | 578 | 39.1 | Plus |