Clone BS05882 Report

Search the DGRC for BS05882

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG11459-RA
Protein status:BS05882.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05882.3prime Sequence

826 bp (746 high quality bases) assembled on 2005-12-03

> BS05882.3prime
ATGGTCTAGAAAGCTTTCAAAAAGTGGGATATTGGGGAAGTGATGCCACT
CCACACATGTTGTTGGCGTTCCGAGCTAGCTTTAAGTAGCCACTTTCTCC
CCAATCGGTTCCATAGGAGTTCTTTATTATCCAGTAGTCTCCCCACTTCC
GATGGGTTCCAAAGCCGACTAAAAGAACGGAGTGTGTAAGGTCCTGTCTC
TTAGATCTGCACGCCGGAATACTGAGGACTCCACCGGAGTACTGATCGAA
TTCCTCGTGGAGATGGTCAATGGACACCGCCACGGGTCCAATGTTGTAGA
CCACCTCCGCCAGTTCCCGTTCATCGTAGTTGCCGAGAGTGACGTAGCCC
GACAATGTGCCTGCACTTCTGTCGCTTTTCCACAGGCATTCTCCTGATAC
AGGCTCGTACGGATAGGATTCCTTTGTGGCGATGCCATGGTCCCTGGTGT
AGTTAAAGGCCACGCTCACCCAACCACCGCTGCAGCCGTTATTCGGATAG
GGAACACAGTCCACCAAGTGCTTGGGTGAAAGGGGAACCAGATTTCCATA
CTTCTTCGCCATATGTGCCTCAAGAACACCCGAGGTGGAGAAGGCCCAGC
AGCTCAGGCACTCGGTGCCCTGGTCTCCCACTGGCGATATATAGCCGTAC
TGCCGCCAGTCGATTCCTTCGGTGATCTGGTCGTACCTCTTGTAGTTTAC
AGTCTCCGTAAGTGCATTGGTACTCGTCTCCAGCGGCGCTGGGATCGACG
AGCGATAATTGAAGAGGATTCTCTGATCTGTGTCGGAGAACTTGTTTAGT
CCCATCTTGAATGCAACCTTTCCCTG

BS05882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-PA 1011 CG11459-RA 202..1011 826..17 4050 100 Minus
CG1075-PA 825 CG1075-RA 633..746 185..72 295 90.3 Minus
CG1075-PA 825 CG1075-RA 491..575 327..243 250 91.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-RB 1413 CG11459-RB 238..1048 826..16 4055 100 Minus
CG11459-RA 1123 CG11459-RA 238..1048 826..16 4055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6026191..6027001 16..826 4055 100 Plus
3R 32079331 3R 6028003..6028621 645..27 1380 82.3 Minus
Blast to na_te.dros performed on 2015-02-03 13:33:13 has no hits.

BS05882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:15 Download gff for BS05882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-PA 202..1011 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:46 Download gff for BS05882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-PA 202..1011 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:34 Download gff for BS05882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 238..1048 16..826 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:50:28 Download gff for BS05882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 238..1048 16..826 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:50:28 Download gff for BS05882.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6026191..6027001 16..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:34 Download gff for BS05882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1851913..1852723 16..826 100   Plus

BS05882.5prime Sequence

901 bp (834 high quality bases) assembled on 2005-12-03

> BS05882.5prime
GAAGTTATCAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTC
TAATCCTTCTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACG
GAGTGGGACCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGA
CAAATACCACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCC
ACAACCAGCTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAAC
AAGTTCTCCGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGAT
CCCAGCGCCGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACT
ACAAGAGGTACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGC
TATATATCGCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGC
CTTCTCCACCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAA
ATCTGGTTCCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCG
AATAACGGCTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAG
GGACCATGGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAG
GAGAATGCCTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTAC
GTCACTCTCGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAA
CATTGGACCCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATC
AGTACTCCGGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAG
GACCTTACACACTCCCGTCTTTTAGTCGGCTTTGGAACCCATCGGAAGTG
G

BS05882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-PA 1011 CG11459-RA 1..885 17..901 4375 99.7 Plus
CG1075-PA 825 CG1075-RA 491..575 717..801 250 91.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-RB 1413 CG11459-RB 37..921 17..901 4395 99.8 Plus
CG11459-RA 1123 CG11459-RA 37..921 17..901 4395 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6026318..6027202 901..17 4395 99.8 Minus
3R 32079331 3R 6028003..6028504 399..901 980 80.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:06:10 has no hits.

BS05882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:16 Download gff for BS05882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:47 Download gff for BS05882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:47:26 Download gff for BS05882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 26..921 7..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:43 Download gff for BS05882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 26..921 7..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:43 Download gff for BS05882.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6026318..6027213 7..901 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:47:26 Download gff for BS05882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1852040..1852935 7..901 99   Minus

BS05882.complete Sequence

1043 bp (1043 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635281

> BS05882.complete
GAAGTTATCAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTC
TAATCCTTCTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACG
GAGTGGGACCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGA
CAAATACCACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCC
ACAACCAGCTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAAC
AAGTTCTCCGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGAT
CCCAGCGCCGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACT
ACAAGAGGTACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGC
TATATATCGCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGC
CTTCTCCACCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAA
ATCTGGTTCCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCG
AATAACGGCTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAG
GGACCATGGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAG
GAGAATGCCTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTAC
GTCACTCTCGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAA
CATTGGACCCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATC
AGTACTCCGGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAG
GACCTTACACACTCCGTTCTTTTAGTCGGCTTTGGAACCCATCGGAAGTG
GGGAGACTACTGGATAATAAAGAACTCCTATGGAACCGATTGGGGAGAAA
GTGGCTACTTAAAGCTAGCTCGGAACGCCAACAACATGTGTGGAGTGGCA
TCACTTCCCCAATATCCCACTTTTTGAAAGCTTTCTAGACCAT

BS05882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-RB 1011 CG11459-PB 1..1011 17..1027 5055 100 Plus
CG11459-RA 1011 CG11459-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-RB 1413 CG11459-RB 37..1048 17..1028 5060 100 Plus
CG11459-RA 1123 CG11459-RA 37..1048 17..1028 5060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6026191..6027202 1028..17 5060 100 Minus
3R 32079331 3R 6028003..6028621 399..1017 1380 82.3 Plus
Blast to na_te.dros performed on 2014-11-27 20:24:02 has no hits.

BS05882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:22 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:41 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 28..1050 7..1028 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:36 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 37..1046 17..1026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:22 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 28..1050 7..1028 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:40 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
CG11459-RA 37..1046 17..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:40 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6026193..6027202 17..1026 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:36 Download gff for BS05882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1851915..1852924 17..1026 100   Minus

BS05882.pep Sequence

Translation from 16 to 1026

> BS05882.pep
MGTPRLTVVHGLILLLLVELGLTAVSDTEWDQYKAKYNKQYRNRDKYHRA
LYEQRVLAVESHNQLYLQGKVAFKMGLNKFSDTDQRILFNYRSSIPAPLE
TSTNALTETVNYKRYDQITEGIDWRQYGYISPVGDQGTECLSCWAFSTSG
VLEAHMAKKYGNLVPLSPKHLVDCVPYPNNGCSGGWVSVAFNYTRDHGIA
TKESYPYEPVSGECLWKSDRSAGTLSGYVTLGNYDERELAEVVYNIGPVA
VSIDHLHEEFDQYSGGVLSIPACRSKRQDLTHSVLLVGFGTHRKWGDYWI
IKNSYGTDWGESGYLKLARNANNMCGVASLPQYPTF*

BS05882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11459-PB 336 CG11459-PB 1..336 1..336 1818 100 Plus
CG11459-PA 336 CG11459-PA 1..336 1..336 1818 100 Plus
Cp1-PC 371 CG6692-PC 30..369 3..334 603 37.9 Plus
Cp1-PA 341 CG6692-PA 2..339 5..334 600 37.8 Plus
Cp1-PE 338 CG6692-PE 36..336 38..334 578 39.1 Plus