Clone Sequence Records
BS05884.3prime Sequence
873 bp (872 high quality bases) assembled on 2005-12-03
> BS05884.3prime
ATGGTCTAGAAAGCTTCTAATTGAAGCCATCCTCGTTTTGTTTCTTGCTG
CTGGCGGCTGCCTCCGCCTGCTGCAGCTCCTTCAGCATTTCCAGCTGCCT
TTTTGAGTCGGCGATCTTCTCTTCTGTCACGGTCACGGGGACATCGCAGG
AAATCTGTTCCTGCCGCACGAACTGCATCTTCTTGATGGCCTCCTCAAGG
AAGGGTATTTGCTGGGCCTGCAGCTGCTTATGGTAAGCCTCTAGCCGCTC
TTCCTTTAGGTTTTCGCAGTATATGTCGGTCAACTTTTGGAGGGATTCCT
TGCGGGTGATCCAGTGGAAATGTGTGGGCGGTGGCTTGTACACCAGGTCG
AGTTTCTCGAGAATCCACTCGAAGCGGGGATAATCCCAACGTCTCAAGTA
CTTGAGGAACTTCTTGCGTTTGTCGATGAGCTCCTTGAGACGCACCTTGA
TCATCTTGTCGCGCGGATGCTTGTCCATGTGCTCCTGGTAGCGGCGGATA
ACTGCAGTCATTTTTGCCAATTTGGCCTCCATTGAGCCGAAATCCTGGGC
ATGTCTTTGCACCTCCTTGACCATCTCATCGCGATAGAATTTTGTGGTCA
GGTAACTAGCGTTGTTGCTCAGTTTGAACAAGGATTTAACTGACTCGTCG
GCTTTATCCAACTCCTTGCAGTCCCTGTATTCCGGCAGCAGTTCGTCGGC
TTTCAGAGGAGGCAGCTTGGCTAAATCGCCGCTCTTTTCGGGCTTATAGC
ACGCGATCTTCTCGGGGCGCATCCATTTGATTTTCAGGTCCGACTTGAAT
GCATATTCCCGGACAAACTGCCGATGCCCTGCCTGGGCTATATTCAACAG
TTTATTCATGTCGACTGATAACT
BS05884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4207-PA | 843 | bonsai-RA | 1..843 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bonsai-RA | 981 | CG4207-RA | 84..926 | 859..17 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22638311..22638813 | 519..17 | 2515 | 100 | Minus |
2R | 25286936 | 2R | 22637853..22638058 | 859..654 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 22638118..22638251 | 653..520 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:18:03 has no hits.
BS05884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:17 Download gff for
BS05884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4207-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:48 Download gff for
BS05884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4207-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:06 Download gff for
BS05884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 84..928 | 13..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:29 Download gff for
BS05884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 84..928 | 13..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:29 Download gff for
BS05884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22637853..22638058 | 654..859 | 100 | -> | Minus |
2R | 22638118..22638251 | 520..653 | 100 | -> | Minus |
2R | 22638311..22638815 | 13..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:06 Download gff for
BS05884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18525623..18525756 | 520..653 | 100 | -> | Minus |
arm_2R | 18525358..18525563 | 654..859 | 100 | -> | Minus |
arm_2R | 18525816..18526320 | 13..519 | 99 | | Minus |
BS05884.5prime Sequence
873 bp (782 high quality bases) assembled on 2005-12-03
> BS05884.5prime
GAAGTTATCAGTCGACATGAATAAACTGTTGAATATAGCCCAGGCAGGGC
ATCGGCAGTTTGTCCGGGAATATGCATTCAAGTCGGACCTGAAAATCAAA
TGGATGCGCCCCGAGAAGATCGCGTGCTATAAGCCCGAAAAGAGCGGCGA
TTTAGCCAAGCTGCCTCCTCTGAAAGCCGACGAACTGCTGCCGGAATACA
GGGACTGCAAGGAGTTGGATAAAGCCGACGAGTCAGTTAAATCCTTGTTC
AAACTGAGCAACAACGCTAGTTACCTGACCACAAAATTCTATCGCGATGA
GATGGTCAAGGAGGTGCAAAGACATGCCCAGGATTTCGGCTCAATGGAGG
CCAAATTGGCAAAAATGACTGCAGTTATCCGCCGCTACCAGGAGCACATG
GACAAGCATCCGCGCGACAAGATGATCAAGGTGCGTCTCAAGGAGCTCAT
CGACAAACGCAAGAAGTTCCTCAAGTACTTGAGACGTTGGGATTATCCCC
GCTTCGAGTGGATTCTCGAGAAACTCGACCTGGTGTACAAGCCACCGCCC
ACACATTTCCACTGGATCACCCGCAAGGAATCCCTCCAAAAGTTGACCGA
CATATACTGCGAAAACCTAAAGGAAGAGCGGCTAGAGGCTTACCATAAGC
AGCTGCAGGCCCAGCAAATACCCTTCCTTGAGGAGGCCATCAAGAAGATG
CAGTTCGTGCGGCAGGAACAGATTTCCTGCGATGTCCCCGTGACCGTGAC
AGAAGAGAAGATCGCCGACTCAAAAAGGCAGCTGGAAATGCTGAAGGAGC
TGCAGCAGGCGGAGGCAGCCGCCAGCAGCAAGAAACAAAACGAGGATGGC
TTCAATTAGAAGCTTTCTAGACC
BS05884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4207-PA | 843 | bonsai-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bonsai-RA | 981 | CG4207-RA | 84..926 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22638311..22638813 | 357..859 | 2515 | 100 | Plus |
2R | 25286936 | 2R | 22637853..22638058 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 22638118..22638251 | 223..356 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:14:45 has no hits.
BS05884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:18 Download gff for
BS05884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4207-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:50 Download gff for
BS05884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4207-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:22 Download gff for
BS05884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 84..928 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:08 Download gff for
BS05884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 84..928 | 17..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:08 Download gff for
BS05884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22637853..22638058 | 17..222 | 100 | -> | Plus |
2R | 22638118..22638251 | 223..356 | 100 | -> | Plus |
2R | 22638311..22638815 | 357..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:22 Download gff for
BS05884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18525358..18525563 | 17..222 | 100 | -> | Plus |
arm_2R | 18525623..18525756 | 223..356 | 100 | -> | Plus |
arm_2R | 18525816..18526320 | 357..863 | 99 | | Plus |
BS05884.complete Sequence
875 bp (875 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635282
> BS05884.complete
GAAGTTATCAGTCGACATGAATAAACTGTTGAATATAGCCCAGGCAGGGC
ATCGGCAGTTTGTCCGGGAATATGCATTCAAGTCGGACCTGAAAATCAAA
TGGATGCGCCCCGAGAAGATCGCGTGCTATAAGCCCGAAAAGAGCGGCGA
TTTAGCCAAGCTGCCTCCTCTGAAAGCCGACGAACTGCTGCCGGAATACA
GGGACTGCAAGGAGTTGGATAAAGCCGACGAGTCAGTTAAATCCTTGTTC
AAACTGAGCAACAACGCTAGTTACCTGACCACAAAATTCTATCGCGATGA
GATGGTCAAGGAGGTGCAAAGACATGCCCAGGATTTCGGCTCAATGGAGG
CCAAATTGGCAAAAATGACTGCAGTTATCCGCCGCTACCAGGAGCACATG
GACAAGCATCCGCGCGACAAGATGATCAAGGTGCGTCTCAAGGAGCTCAT
CGACAAACGCAAGAAGTTCCTCAAGTACTTGAGACGTTGGGATTATCCCC
GCTTCGAGTGGATTCTCGAGAAACTCGACCTGGTGTACAAGCCACCGCCC
ACACATTTCCACTGGATCACCCGCAAGGAATCCCTCCAAAAGTTGACCGA
CATATACTGCGAAAACCTAAAGGAAGAGCGGCTAGAGGCTTACCATAAGC
AGCTGCAGGCCCAGCAAATACCCTTCCTTGAGGAGGCCATCAAGAAGATG
CAGTTCGTGCGGCAGGAACAGATTTCCTGCGATGTCCCCGTGACCGTGAC
AGAAGAGAAGATCGCCGACTCAAAAAGGCAGCTGGAAATGCTGAAGGAGC
TGCAGCAGGCGGAGGCAGCCGCCAGCAGCAAGAAACAAAACGAGGATGGC
TTCAATTAGAAGCTTTCTAGACCAT
BS05884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bonsai-RA | 843 | CG4207-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bonsai-RA | 981 | CG4207-RA | 84..926 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22638311..22638813 | 357..859 | 2515 | 100 | Plus |
2R | 25286936 | 2R | 22637853..22638058 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 22638118..22638251 | 223..356 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:52:05 has no hits.
BS05884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:02 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:18 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 82..926 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:05 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 84..926 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:02 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 82..926 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:41 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bonsai-RA | 84..926 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:41 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22637853..22638058 | 17..222 | 100 | -> | Plus |
2R | 22638118..22638251 | 223..356 | 100 | -> | Plus |
2R | 22638311..22638813 | 357..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:05 Download gff for
BS05884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18525623..18525756 | 223..356 | 100 | -> | Plus |
arm_2R | 18525816..18526318 | 357..859 | 100 | | Plus |
arm_2R | 18525358..18525563 | 17..222 | 100 | -> | Plus |
BS05884.pep Sequence
Translation from 16 to 858
> BS05884.pep
MNKLLNIAQAGHRQFVREYAFKSDLKIKWMRPEKIACYKPEKSGDLAKLP
PLKADELLPEYRDCKELDKADESVKSLFKLSNNASYLTTKFYRDEMVKEV
QRHAQDFGSMEAKLAKMTAVIRRYQEHMDKHPRDKMIKVRLKELIDKRKK
FLKYLRRWDYPRFEWILEKLDLVYKPPPTHFHWITRKESLQKLTDIYCEN
LKEERLEAYHKQLQAQQIPFLEEAIKKMQFVRQEQISCDVPVTVTEEKIA
DSKRQLEMLKELQQAEAAASSKKQNEDGFN*
BS05884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bonsai-PA | 280 | CG4207-PA | 1..280 | 1..280 | 1461 | 100 | Plus |