Clone BS05884 Report

Search the DGRC for BS05884

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptbonsai-RA
Protein status:BS05884.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05884.3prime Sequence

873 bp (872 high quality bases) assembled on 2005-12-03

> BS05884.3prime
ATGGTCTAGAAAGCTTCTAATTGAAGCCATCCTCGTTTTGTTTCTTGCTG
CTGGCGGCTGCCTCCGCCTGCTGCAGCTCCTTCAGCATTTCCAGCTGCCT
TTTTGAGTCGGCGATCTTCTCTTCTGTCACGGTCACGGGGACATCGCAGG
AAATCTGTTCCTGCCGCACGAACTGCATCTTCTTGATGGCCTCCTCAAGG
AAGGGTATTTGCTGGGCCTGCAGCTGCTTATGGTAAGCCTCTAGCCGCTC
TTCCTTTAGGTTTTCGCAGTATATGTCGGTCAACTTTTGGAGGGATTCCT
TGCGGGTGATCCAGTGGAAATGTGTGGGCGGTGGCTTGTACACCAGGTCG
AGTTTCTCGAGAATCCACTCGAAGCGGGGATAATCCCAACGTCTCAAGTA
CTTGAGGAACTTCTTGCGTTTGTCGATGAGCTCCTTGAGACGCACCTTGA
TCATCTTGTCGCGCGGATGCTTGTCCATGTGCTCCTGGTAGCGGCGGATA
ACTGCAGTCATTTTTGCCAATTTGGCCTCCATTGAGCCGAAATCCTGGGC
ATGTCTTTGCACCTCCTTGACCATCTCATCGCGATAGAATTTTGTGGTCA
GGTAACTAGCGTTGTTGCTCAGTTTGAACAAGGATTTAACTGACTCGTCG
GCTTTATCCAACTCCTTGCAGTCCCTGTATTCCGGCAGCAGTTCGTCGGC
TTTCAGAGGAGGCAGCTTGGCTAAATCGCCGCTCTTTTCGGGCTTATAGC
ACGCGATCTTCTCGGGGCGCATCCATTTGATTTTCAGGTCCGACTTGAAT
GCATATTCCCGGACAAACTGCCGATGCCCTGCCTGGGCTATATTCAACAG
TTTATTCATGTCGACTGATAACT

BS05884.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4207-PA 843 bonsai-RA 1..843 859..17 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-RA 981 CG4207-RA 84..926 859..17 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22638311..22638813 519..17 2515 100 Minus
2R 25286936 2R 22637853..22638058 859..654 1030 100 Minus
2R 25286936 2R 22638118..22638251 653..520 670 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:18:03 has no hits.

BS05884.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:17 Download gff for BS05884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4207-PA 1..843 17..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:48 Download gff for BS05884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4207-PA 1..843 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:06 Download gff for BS05884.3prime
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 84..928 13..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:29 Download gff for BS05884.3prime
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 84..928 13..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:29 Download gff for BS05884.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22637853..22638058 654..859 100 -> Minus
2R 22638118..22638251 520..653 100 -> Minus
2R 22638311..22638815 13..519 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:06 Download gff for BS05884.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18525623..18525756 520..653 100 -> Minus
arm_2R 18525358..18525563 654..859 100 -> Minus
arm_2R 18525816..18526320 13..519 99   Minus

BS05884.5prime Sequence

873 bp (782 high quality bases) assembled on 2005-12-03

> BS05884.5prime
GAAGTTATCAGTCGACATGAATAAACTGTTGAATATAGCCCAGGCAGGGC
ATCGGCAGTTTGTCCGGGAATATGCATTCAAGTCGGACCTGAAAATCAAA
TGGATGCGCCCCGAGAAGATCGCGTGCTATAAGCCCGAAAAGAGCGGCGA
TTTAGCCAAGCTGCCTCCTCTGAAAGCCGACGAACTGCTGCCGGAATACA
GGGACTGCAAGGAGTTGGATAAAGCCGACGAGTCAGTTAAATCCTTGTTC
AAACTGAGCAACAACGCTAGTTACCTGACCACAAAATTCTATCGCGATGA
GATGGTCAAGGAGGTGCAAAGACATGCCCAGGATTTCGGCTCAATGGAGG
CCAAATTGGCAAAAATGACTGCAGTTATCCGCCGCTACCAGGAGCACATG
GACAAGCATCCGCGCGACAAGATGATCAAGGTGCGTCTCAAGGAGCTCAT
CGACAAACGCAAGAAGTTCCTCAAGTACTTGAGACGTTGGGATTATCCCC
GCTTCGAGTGGATTCTCGAGAAACTCGACCTGGTGTACAAGCCACCGCCC
ACACATTTCCACTGGATCACCCGCAAGGAATCCCTCCAAAAGTTGACCGA
CATATACTGCGAAAACCTAAAGGAAGAGCGGCTAGAGGCTTACCATAAGC
AGCTGCAGGCCCAGCAAATACCCTTCCTTGAGGAGGCCATCAAGAAGATG
CAGTTCGTGCGGCAGGAACAGATTTCCTGCGATGTCCCCGTGACCGTGAC
AGAAGAGAAGATCGCCGACTCAAAAAGGCAGCTGGAAATGCTGAAGGAGC
TGCAGCAGGCGGAGGCAGCCGCCAGCAGCAAGAAACAAAACGAGGATGGC
TTCAATTAGAAGCTTTCTAGACC

BS05884.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4207-PA 843 bonsai-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-RA 981 CG4207-RA 84..926 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22638311..22638813 357..859 2515 100 Plus
2R 25286936 2R 22637853..22638058 17..222 1030 100 Plus
2R 25286936 2R 22638118..22638251 223..356 670 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:14:45 has no hits.

BS05884.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:18 Download gff for BS05884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4207-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:50 Download gff for BS05884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4207-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:22 Download gff for BS05884.5prime
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 84..928 17..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:08 Download gff for BS05884.5prime
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 84..928 17..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:08 Download gff for BS05884.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22637853..22638058 17..222 100 -> Plus
2R 22638118..22638251 223..356 100 -> Plus
2R 22638311..22638815 357..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:22 Download gff for BS05884.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18525358..18525563 17..222 100 -> Plus
arm_2R 18525623..18525756 223..356 100 -> Plus
arm_2R 18525816..18526320 357..863 99   Plus

BS05884.complete Sequence

875 bp (875 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635282

> BS05884.complete
GAAGTTATCAGTCGACATGAATAAACTGTTGAATATAGCCCAGGCAGGGC
ATCGGCAGTTTGTCCGGGAATATGCATTCAAGTCGGACCTGAAAATCAAA
TGGATGCGCCCCGAGAAGATCGCGTGCTATAAGCCCGAAAAGAGCGGCGA
TTTAGCCAAGCTGCCTCCTCTGAAAGCCGACGAACTGCTGCCGGAATACA
GGGACTGCAAGGAGTTGGATAAAGCCGACGAGTCAGTTAAATCCTTGTTC
AAACTGAGCAACAACGCTAGTTACCTGACCACAAAATTCTATCGCGATGA
GATGGTCAAGGAGGTGCAAAGACATGCCCAGGATTTCGGCTCAATGGAGG
CCAAATTGGCAAAAATGACTGCAGTTATCCGCCGCTACCAGGAGCACATG
GACAAGCATCCGCGCGACAAGATGATCAAGGTGCGTCTCAAGGAGCTCAT
CGACAAACGCAAGAAGTTCCTCAAGTACTTGAGACGTTGGGATTATCCCC
GCTTCGAGTGGATTCTCGAGAAACTCGACCTGGTGTACAAGCCACCGCCC
ACACATTTCCACTGGATCACCCGCAAGGAATCCCTCCAAAAGTTGACCGA
CATATACTGCGAAAACCTAAAGGAAGAGCGGCTAGAGGCTTACCATAAGC
AGCTGCAGGCCCAGCAAATACCCTTCCTTGAGGAGGCCATCAAGAAGATG
CAGTTCGTGCGGCAGGAACAGATTTCCTGCGATGTCCCCGTGACCGTGAC
AGAAGAGAAGATCGCCGACTCAAAAAGGCAGCTGGAAATGCTGAAGGAGC
TGCAGCAGGCGGAGGCAGCCGCCAGCAGCAAGAAACAAAACGAGGATGGC
TTCAATTAGAAGCTTTCTAGACCAT

BS05884.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-RA 843 CG4207-PA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-RA 981 CG4207-RA 84..926 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22638311..22638813 357..859 2515 100 Plus
2R 25286936 2R 22637853..22638058 17..222 1030 100 Plus
2R 25286936 2R 22638118..22638251 223..356 670 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:52:05 has no hits.

BS05884.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:02 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:18 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 82..926 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:05 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 84..926 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:02 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 82..926 17..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:41 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
bonsai-RA 84..926 17..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:41 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22637853..22638058 17..222 100 -> Plus
2R 22638118..22638251 223..356 100 -> Plus
2R 22638311..22638813 357..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:05 Download gff for BS05884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18525623..18525756 223..356 100 -> Plus
arm_2R 18525816..18526318 357..859 100   Plus
arm_2R 18525358..18525563 17..222 100 -> Plus

BS05884.pep Sequence

Translation from 16 to 858

> BS05884.pep
MNKLLNIAQAGHRQFVREYAFKSDLKIKWMRPEKIACYKPEKSGDLAKLP
PLKADELLPEYRDCKELDKADESVKSLFKLSNNASYLTTKFYRDEMVKEV
QRHAQDFGSMEAKLAKMTAVIRRYQEHMDKHPRDKMIKVRLKELIDKRKK
FLKYLRRWDYPRFEWILEKLDLVYKPPPTHFHWITRKESLQKLTDIYCEN
LKEERLEAYHKQLQAQQIPFLEEAIKKMQFVRQEQISCDVPVTVTEEKIA
DSKRQLEMLKELQQAEAAASSKKQNEDGFN*

BS05884.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
bonsai-PA 280 CG4207-PA 1..280 1..280 1461 100 Plus