Clone BS05886 Report

Search the DGRC for BS05886

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG3191-RA
Protein status:BS05886.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05886.3prime Sequence

956 bp (858 high quality bases) assembled on 2005-12-03

> BS05886.3prime
ATGGTCTAGAAAGCTTTCATTTGAAAAATCTCCACGAACTCTCGTTCCGC
TTCTCCGGCTTCACCACCACCCAGTGATCGGGGTCCATCAGATAGTCGCG
ATGCTCAACCAAGGCCTTTTGGGTATGGGTCCGCAGTGCTTCTAAGGACC
CGGCTCCTCCGCCGTACTCCTCCGGCAGCATCTCCCGCGGCACGAACTCG
TACAGCGTATTTATGCTTTGCGTGTGGAAACGGATCAGCTTGAAGACCTC
GTCGCTGATGAACGGCTTCACCACGCTGACGATCCGATCCAGGTAAGTTG
GACAGTTAATCATGTGAATGGCGCGCAGGCGCACCGGAAATGCCAGCTGG
AGGAACTTGATGTAGGCGCGCAGCGTGCTGATCGTCAGCCGCGAAATGTG
CCGCATTGTGGTGCCCTTCATGTCGAATATCTGCACCTCTCCTTCGGACA
GGACATCCGGTTTGGCGAGATCGTCCGGCGTCACGAACCGGCAGTCGCTG
ACCATAAAGAAGGCGCGCGTGTCCTCCGTGTGGTGCATCTTGGAGGCCTC
GAACTCCCGAAAGCAGTACAGCGACACCTTGCATTTGTCCGGCGTTAGGC
CAGGCAGCGGTAGAATGTCTGCGTAGTCAAAGGTGCGCTTGCTGTCCGCG
TCTAGAGGATCCCTCTTGATAAACAGGTGAGGGTGCCGGTTGCGCAGGGC
GTAGTTCACCTCGATGAGCTTCCGAGTCTCCTCCACGTCTCCAAACATGC
ACTGGTAGAAGCGCCGGAGCAGCAGCGGATCAATCTCCTTGGGCAGCTTG
TCATTTTGCCGGAACCACTCGAGGAGCTCCTTGAGATCCCGTTCCTGCTT
CCGCACCGCCTGGTCCGATGTGTCGCTATCCTGTTTCCGCTGCAGCTGCT
CGGACGTACCGCTCGCCCCAGTCTCTCTCACACCTATGCGGCTCATGTCG
ACTGAT

BS05886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-PA 930 CG3191-RA 1..930 946..17 4600 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-RC 1113 CG3191-RC 23..952 946..17 4620 99.8 Minus
CG3191-RA 1247 CG3191-RA 157..1086 946..17 4620 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2250647..2250951 236..540 1525 100 Plus
X 23542271 X 2251195..2251355 621..781 805 100 Plus
X 23542271 X 2251672..2251837 781..946 800 98.8 Plus
X 23542271 X 2250444..2250581 99..236 690 100 Plus
X 23542271 X 2250306..2250388 17..99 415 100 Plus
X 23542271 X 2251013..2251094 539..620 410 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:18:18 has no hits.

BS05886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:21 Download gff for BS05886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-PA 1..930 17..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:54 Download gff for BS05886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-PA 1..930 17..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:14 Download gff for BS05886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 149..1092 12..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:39 Download gff for BS05886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 149..1092 12..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:39 Download gff for BS05886.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2251195..2251354 621..780 100 <- Plus
X 2251672..2251842 781..954 96   Plus
X 2250300..2250387 12..98 96 <- Plus
X 2250444..2250580 99..235 100 <- Plus
X 2250647..2250949 236..538 100 <- Plus
X 2251013..2251094 539..620 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:14 Download gff for BS05886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2145046..2145127 539..620 100 <- Plus
arm_X 2145228..2145387 621..780 100 <- Plus
arm_X 2145705..2145875 781..954 96   Plus
arm_X 2144333..2144420 12..98 96 <- Plus
arm_X 2144477..2144613 99..235 100 <- Plus
arm_X 2144680..2144982 236..538 100 <- Plus

BS05886.5prime Sequence

890 bp (717 high quality bases) assembled on 2005-12-03

> BS05886.5prime
GAAGTTATCAGTCGACATGAGCCGCATAGGTGTGAGAGAGACTGGGGCGA
GCGGTACGTCCGAGCAGCTGCAGCGGGAACAGGATAGCGACACATCGGAA
CAGGCGGTGCGGAAGCAGGAACGGGATCTCAAGGAGCTCCTCGAGTGGTT
CCGGCAAAATGACAAGCTGCCCAAGGAGATTGATCCGCTGCTGCTCCGGC
GCTTCTACCAGTGCATGTTTGGAGACGTGGAGGAGACTCGGAAGCTCATC
GAGGTGAACTACGCCCTGCGCAACCGGCACCCTCACCTGTTTATCAAGAG
GGATCCTCTAGACGCGGACAGCAAGCGCACCTTTGACTACGCAGACATTC
TACCGCTGCCTGGCCTAACGCCGGACAAATGCAAGGTGTCGCTGTACTGC
TTTCGGGAGTTCGAGGCCTCCAAGATGCACCACACGGAGGACACGCGCGC
CTTCTTTATGGTCAGCGACTGCCGGTTCGTGACGCCGGACGATCTCGCCA
AACCGGATGTCCTGTCCGAAGGAGAGGTGCAGATATTCGACATGAAGGGC
ACCACAATGCGGCACATTTCGCGGCTGACGATCAGCACGCTGCGCGCCTA
CATCAAGTTCCTCCAGCTGGCATTTCCGGTGCGCCTGCGCGCCATTCACA
TGATTAACTGTCCAACTTACCTGGATCGGATCGTCAGCGTGGTGAAGCCG
TTCATCAGCGACGAGGTCTTNCAGCTGATCCGTTTCCACACGCAAAGCAT
AAATACGCTGTACGAGTTCGTGCCGCGGGAGATGCTGCCGGAGGAGTACG
GCGGAGGAGCCGGGTCCTTAGAAGCACTGCGGACCCATACCCAAAAGGCC
TTGGTTGAGCATCGCGACTATCTGATGGACCCCGATCACT

BS05886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-PA 930 CG3191-RA 1..874 17..890 4326 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-RC 1113 CG3191-RC 23..896 17..890 4344 99.8 Plus
CG3191-RA 1247 CG3191-RA 157..1030 17..890 4344 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2250647..2250951 727..423 1499 99.3 Minus
X 23542271 X 2251672..2251837 182..17 830 100 Minus
X 23542271 X 2251195..2251355 342..182 805 100 Minus
X 23542271 X 2250444..2250581 864..727 690 100 Minus
X 23542271 X 2251013..2251094 424..343 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:08:35 has no hits.

BS05886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:21 Download gff for BS05886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:55 Download gff for BS05886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:46 Download gff for BS05886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 149..1030 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:04 Download gff for BS05886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 149..1030 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:04 Download gff for BS05886.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2251672..2251842 9..182 97   Minus
X 2250362..2250387 865..890 100 <- Minus
X 2250444..2250580 728..864 100 <- Minus
X 2250647..2250949 425..727 99 <- Minus
X 2251013..2251094 343..424 100 <- Minus
X 2251195..2251354 183..342 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:46 Download gff for BS05886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2145228..2145387 183..342 100 <- Minus
arm_X 2145705..2145875 9..182 97   Minus
arm_X 2144395..2144420 865..890 100 <- Minus
arm_X 2144477..2144613 728..864 100 <- Minus
arm_X 2145046..2145127 343..424 100 <- Minus
arm_X 2144680..2144982 425..727 99 <- Minus

BS05886.complete Sequence

962 bp (962 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635283

> BS05886.complete
GAAGTTATCAGTCGACATGAGCCGCATAGGTGTGAGAGAGACTGGGGCGA
GCGGTACGTCCGAGCAGCTGCAGCGGGAACAGGATAGCGACACATCGGAA
CAGGCGGTGCGGAAGCAGGAACGGGATCTCAAGGAGCTCCTCGAGTGGTT
CCGGCAAAATGACAAGCTGCCCAAGGAGATTGATCCGCTGCTGCTCCGGC
GCTTCTACCAGTGCATGTTTGGAGACGTGGAGGAGACTCGGAAGCTCATC
GAGGTGAACTACGCCCTGCGCAACCGGCACCCTCACCTGTTTATCAAGAG
GGATCCTCTAGACGCGGACAGCAAGCGCACCTTTGACTACGCAGACATTC
TACCGCTGCCTGGCCTAACGCCGGACAAATGCAAGGTGTCGCTGTACTGC
TTTCGGGAGTTCGAGGCCTCCAAGATGCACCACACGGAGGACACGCGCGC
CTTCTTTATGGTCAGCGACTGCCGGTTCGTGACGCCGGACGATCTCGCCA
AACCGGATGTCCTGTCCGAAGGAGAGGTGCAGATATTCGACATGAAGGGC
ACCACAATGCGGCACATTTCGCGGCTGACGATCAGCACGCTGCGCGCCTA
CATCAAGTTCCTCCAGCTGGCATTTCCGGTGCGCCTGCGCGCCATTCACA
TGATTAACTGTCCAACTTACCTGGATCGGATCGTCAGCGTGGTGAAGCCG
TTCATCAGCGACGAGGTCTTCAAGCTGATCCGTTTCCACACGCAAAGCAT
AAATACGCTGTACGAGTTCGTGCCGCGGGAGATGCTGCCGGAGGAGTACG
GCGGAGGAGCCGGGTCCTTAGAAGCACTGCGGACCCATACCCAAAAGGCC
TTGGTTGAGCATCGCGACTATCTGATGGACCCCGATCACTGGGTGGTGGT
GAAGCCGGAGAAGCGGAACGAGAGTTCGTGGAGATTTTTCAAATGAAAGC
TTTCTAGACCAT

BS05886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-RC 930 CG3191-PC 1..930 17..946 4650 100 Plus
CG3191-RA 930 CG3191-PA 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-RC 1113 CG3191-RC 23..952 17..946 4650 100 Plus
CG3191-RA 1247 CG3191-RA 157..1086 17..946 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2250647..2250951 727..423 1525 100 Minus
X 23542271 X 2251672..2251837 182..17 830 100 Minus
X 23542271 X 2251195..2251355 342..182 805 100 Minus
X 23542271 X 2250444..2250581 864..727 690 100 Minus
X 23542271 X 2250306..2250388 946..864 415 100 Minus
X 23542271 X 2251013..2251094 424..343 410 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:36:36 has no hits.

BS05886.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:03 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:20 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 140..1083 9..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:57 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 157..1085 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:03 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 140..1083 9..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:48 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
CG3191-RA 157..1085 17..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:48 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
X 2251672..2251837 17..182 100   Minus
X 2250307..2250387 865..945 100 <- Minus
X 2250444..2250580 728..864 100 <- Minus
X 2250647..2250949 425..727 100 <- Minus
X 2251013..2251094 343..424 100 <- Minus
X 2251195..2251354 183..342 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:57 Download gff for BS05886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2144340..2144420 865..945 100 <- Minus
arm_X 2145046..2145127 343..424 100 <- Minus
arm_X 2145228..2145387 183..342 100 <- Minus
arm_X 2145705..2145870 17..182 100   Minus
arm_X 2144477..2144613 728..864 100 <- Minus
arm_X 2144680..2144982 425..727 100 <- Minus

BS05886.pep Sequence

Translation from 16 to 945

> BS05886.pep
MSRIGVRETGASGTSEQLQREQDSDTSEQAVRKQERDLKELLEWFRQNDK
LPKEIDPLLLRRFYQCMFGDVEETRKLIEVNYALRNRHPHLFIKRDPLDA
DSKRTFDYADILPLPGLTPDKCKVSLYCFREFEASKMHHTEDTRAFFMVS
DCRFVTPDDLAKPDVLSEGEVQIFDMKGTTMRHISRLTISTLRAYIKFLQ
LAFPVRLRAIHMINCPTYLDRIVSVVKPFISDEVFKLIRFHTQSINTLYE
FVPREMLPEEYGGGAGSLEALRTHTQKALVEHRDYLMDPDHWVVVKPEKR
NESSWRFFK*

BS05886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3191-PC 309 CG3191-PC 1..309 1..309 1625 100 Plus
CG3191-PA 309 CG3191-PA 1..309 1..309 1625 100 Plus
CG3823-PA 295 CG3823-PA 17..277 38..302 684 46.8 Plus
CG3091-PC 303 CG3091-PC 8..303 20..308 582 38.3 Plus
CG3091-PA 303 CG3091-PA 8..303 20..308 582 38.3 Plus