Clone Sequence Records
BS05886.3prime Sequence
956 bp (858 high quality bases) assembled on 2005-12-03
> BS05886.3prime
ATGGTCTAGAAAGCTTTCATTTGAAAAATCTCCACGAACTCTCGTTCCGC
TTCTCCGGCTTCACCACCACCCAGTGATCGGGGTCCATCAGATAGTCGCG
ATGCTCAACCAAGGCCTTTTGGGTATGGGTCCGCAGTGCTTCTAAGGACC
CGGCTCCTCCGCCGTACTCCTCCGGCAGCATCTCCCGCGGCACGAACTCG
TACAGCGTATTTATGCTTTGCGTGTGGAAACGGATCAGCTTGAAGACCTC
GTCGCTGATGAACGGCTTCACCACGCTGACGATCCGATCCAGGTAAGTTG
GACAGTTAATCATGTGAATGGCGCGCAGGCGCACCGGAAATGCCAGCTGG
AGGAACTTGATGTAGGCGCGCAGCGTGCTGATCGTCAGCCGCGAAATGTG
CCGCATTGTGGTGCCCTTCATGTCGAATATCTGCACCTCTCCTTCGGACA
GGACATCCGGTTTGGCGAGATCGTCCGGCGTCACGAACCGGCAGTCGCTG
ACCATAAAGAAGGCGCGCGTGTCCTCCGTGTGGTGCATCTTGGAGGCCTC
GAACTCCCGAAAGCAGTACAGCGACACCTTGCATTTGTCCGGCGTTAGGC
CAGGCAGCGGTAGAATGTCTGCGTAGTCAAAGGTGCGCTTGCTGTCCGCG
TCTAGAGGATCCCTCTTGATAAACAGGTGAGGGTGCCGGTTGCGCAGGGC
GTAGTTCACCTCGATGAGCTTCCGAGTCTCCTCCACGTCTCCAAACATGC
ACTGGTAGAAGCGCCGGAGCAGCAGCGGATCAATCTCCTTGGGCAGCTTG
TCATTTTGCCGGAACCACTCGAGGAGCTCCTTGAGATCCCGTTCCTGCTT
CCGCACCGCCTGGTCCGATGTGTCGCTATCCTGTTTCCGCTGCAGCTGCT
CGGACGTACCGCTCGCCCCAGTCTCTCTCACACCTATGCGGCTCATGTCG
ACTGAT
BS05886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-PA | 930 | CG3191-RA | 1..930 | 946..17 | 4600 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-RC | 1113 | CG3191-RC | 23..952 | 946..17 | 4620 | 99.8 | Minus |
CG3191-RA | 1247 | CG3191-RA | 157..1086 | 946..17 | 4620 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2250647..2250951 | 236..540 | 1525 | 100 | Plus |
X | 23542271 | X | 2251195..2251355 | 621..781 | 805 | 100 | Plus |
X | 23542271 | X | 2251672..2251837 | 781..946 | 800 | 98.8 | Plus |
X | 23542271 | X | 2250444..2250581 | 99..236 | 690 | 100 | Plus |
X | 23542271 | X | 2250306..2250388 | 17..99 | 415 | 100 | Plus |
X | 23542271 | X | 2251013..2251094 | 539..620 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:18:18 has no hits.
BS05886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:21 Download gff for
BS05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-PA | 1..930 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:54 Download gff for
BS05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-PA | 1..930 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:14 Download gff for
BS05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 149..1092 | 12..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:39 Download gff for
BS05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 149..1092 | 12..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:39 Download gff for
BS05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2251195..2251354 | 621..780 | 100 | <- | Plus |
X | 2251672..2251842 | 781..954 | 96 | | Plus |
X | 2250300..2250387 | 12..98 | 96 | <- | Plus |
X | 2250444..2250580 | 99..235 | 100 | <- | Plus |
X | 2250647..2250949 | 236..538 | 100 | <- | Plus |
X | 2251013..2251094 | 539..620 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:14 Download gff for
BS05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2145046..2145127 | 539..620 | 100 | <- | Plus |
arm_X | 2145228..2145387 | 621..780 | 100 | <- | Plus |
arm_X | 2145705..2145875 | 781..954 | 96 | | Plus |
arm_X | 2144333..2144420 | 12..98 | 96 | <- | Plus |
arm_X | 2144477..2144613 | 99..235 | 100 | <- | Plus |
arm_X | 2144680..2144982 | 236..538 | 100 | <- | Plus |
BS05886.5prime Sequence
890 bp (717 high quality bases) assembled on 2005-12-03
> BS05886.5prime
GAAGTTATCAGTCGACATGAGCCGCATAGGTGTGAGAGAGACTGGGGCGA
GCGGTACGTCCGAGCAGCTGCAGCGGGAACAGGATAGCGACACATCGGAA
CAGGCGGTGCGGAAGCAGGAACGGGATCTCAAGGAGCTCCTCGAGTGGTT
CCGGCAAAATGACAAGCTGCCCAAGGAGATTGATCCGCTGCTGCTCCGGC
GCTTCTACCAGTGCATGTTTGGAGACGTGGAGGAGACTCGGAAGCTCATC
GAGGTGAACTACGCCCTGCGCAACCGGCACCCTCACCTGTTTATCAAGAG
GGATCCTCTAGACGCGGACAGCAAGCGCACCTTTGACTACGCAGACATTC
TACCGCTGCCTGGCCTAACGCCGGACAAATGCAAGGTGTCGCTGTACTGC
TTTCGGGAGTTCGAGGCCTCCAAGATGCACCACACGGAGGACACGCGCGC
CTTCTTTATGGTCAGCGACTGCCGGTTCGTGACGCCGGACGATCTCGCCA
AACCGGATGTCCTGTCCGAAGGAGAGGTGCAGATATTCGACATGAAGGGC
ACCACAATGCGGCACATTTCGCGGCTGACGATCAGCACGCTGCGCGCCTA
CATCAAGTTCCTCCAGCTGGCATTTCCGGTGCGCCTGCGCGCCATTCACA
TGATTAACTGTCCAACTTACCTGGATCGGATCGTCAGCGTGGTGAAGCCG
TTCATCAGCGACGAGGTCTTNCAGCTGATCCGTTTCCACACGCAAAGCAT
AAATACGCTGTACGAGTTCGTGCCGCGGGAGATGCTGCCGGAGGAGTACG
GCGGAGGAGCCGGGTCCTTAGAAGCACTGCGGACCCATACCCAAAAGGCC
TTGGTTGAGCATCGCGACTATCTGATGGACCCCGATCACT
BS05886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-PA | 930 | CG3191-RA | 1..874 | 17..890 | 4326 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-RC | 1113 | CG3191-RC | 23..896 | 17..890 | 4344 | 99.8 | Plus |
CG3191-RA | 1247 | CG3191-RA | 157..1030 | 17..890 | 4344 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2250647..2250951 | 727..423 | 1499 | 99.3 | Minus |
X | 23542271 | X | 2251672..2251837 | 182..17 | 830 | 100 | Minus |
X | 23542271 | X | 2251195..2251355 | 342..182 | 805 | 100 | Minus |
X | 23542271 | X | 2250444..2250581 | 864..727 | 690 | 100 | Minus |
X | 23542271 | X | 2251013..2251094 | 424..343 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:08:35 has no hits.
BS05886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:21 Download gff for
BS05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:55 Download gff for
BS05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:46 Download gff for
BS05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 149..1030 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:04 Download gff for
BS05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 149..1030 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:04 Download gff for
BS05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2251672..2251842 | 9..182 | 97 | | Minus |
X | 2250362..2250387 | 865..890 | 100 | <- | Minus |
X | 2250444..2250580 | 728..864 | 100 | <- | Minus |
X | 2250647..2250949 | 425..727 | 99 | <- | Minus |
X | 2251013..2251094 | 343..424 | 100 | <- | Minus |
X | 2251195..2251354 | 183..342 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:46 Download gff for
BS05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2145228..2145387 | 183..342 | 100 | <- | Minus |
arm_X | 2145705..2145875 | 9..182 | 97 | | Minus |
arm_X | 2144395..2144420 | 865..890 | 100 | <- | Minus |
arm_X | 2144477..2144613 | 728..864 | 100 | <- | Minus |
arm_X | 2145046..2145127 | 343..424 | 100 | <- | Minus |
arm_X | 2144680..2144982 | 425..727 | 99 | <- | Minus |
BS05886.complete Sequence
962 bp (962 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635283
> BS05886.complete
GAAGTTATCAGTCGACATGAGCCGCATAGGTGTGAGAGAGACTGGGGCGA
GCGGTACGTCCGAGCAGCTGCAGCGGGAACAGGATAGCGACACATCGGAA
CAGGCGGTGCGGAAGCAGGAACGGGATCTCAAGGAGCTCCTCGAGTGGTT
CCGGCAAAATGACAAGCTGCCCAAGGAGATTGATCCGCTGCTGCTCCGGC
GCTTCTACCAGTGCATGTTTGGAGACGTGGAGGAGACTCGGAAGCTCATC
GAGGTGAACTACGCCCTGCGCAACCGGCACCCTCACCTGTTTATCAAGAG
GGATCCTCTAGACGCGGACAGCAAGCGCACCTTTGACTACGCAGACATTC
TACCGCTGCCTGGCCTAACGCCGGACAAATGCAAGGTGTCGCTGTACTGC
TTTCGGGAGTTCGAGGCCTCCAAGATGCACCACACGGAGGACACGCGCGC
CTTCTTTATGGTCAGCGACTGCCGGTTCGTGACGCCGGACGATCTCGCCA
AACCGGATGTCCTGTCCGAAGGAGAGGTGCAGATATTCGACATGAAGGGC
ACCACAATGCGGCACATTTCGCGGCTGACGATCAGCACGCTGCGCGCCTA
CATCAAGTTCCTCCAGCTGGCATTTCCGGTGCGCCTGCGCGCCATTCACA
TGATTAACTGTCCAACTTACCTGGATCGGATCGTCAGCGTGGTGAAGCCG
TTCATCAGCGACGAGGTCTTCAAGCTGATCCGTTTCCACACGCAAAGCAT
AAATACGCTGTACGAGTTCGTGCCGCGGGAGATGCTGCCGGAGGAGTACG
GCGGAGGAGCCGGGTCCTTAGAAGCACTGCGGACCCATACCCAAAAGGCC
TTGGTTGAGCATCGCGACTATCTGATGGACCCCGATCACTGGGTGGTGGT
GAAGCCGGAGAAGCGGAACGAGAGTTCGTGGAGATTTTTCAAATGAAAGC
TTTCTAGACCAT
BS05886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-RC | 930 | CG3191-PC | 1..930 | 17..946 | 4650 | 100 | Plus |
CG3191-RA | 930 | CG3191-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-RC | 1113 | CG3191-RC | 23..952 | 17..946 | 4650 | 100 | Plus |
CG3191-RA | 1247 | CG3191-RA | 157..1086 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2250647..2250951 | 727..423 | 1525 | 100 | Minus |
X | 23542271 | X | 2251672..2251837 | 182..17 | 830 | 100 | Minus |
X | 23542271 | X | 2251195..2251355 | 342..182 | 805 | 100 | Minus |
X | 23542271 | X | 2250444..2250581 | 864..727 | 690 | 100 | Minus |
X | 23542271 | X | 2250306..2250388 | 946..864 | 415 | 100 | Minus |
X | 23542271 | X | 2251013..2251094 | 424..343 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:36 has no hits.
BS05886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:03 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:20 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 140..1083 | 9..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:57 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 157..1085 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:03 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 140..1083 | 9..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:48 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3191-RA | 157..1085 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:48 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2251672..2251837 | 17..182 | 100 | | Minus |
X | 2250307..2250387 | 865..945 | 100 | <- | Minus |
X | 2250444..2250580 | 728..864 | 100 | <- | Minus |
X | 2250647..2250949 | 425..727 | 100 | <- | Minus |
X | 2251013..2251094 | 343..424 | 100 | <- | Minus |
X | 2251195..2251354 | 183..342 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:57 Download gff for
BS05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2144340..2144420 | 865..945 | 100 | <- | Minus |
arm_X | 2145046..2145127 | 343..424 | 100 | <- | Minus |
arm_X | 2145228..2145387 | 183..342 | 100 | <- | Minus |
arm_X | 2145705..2145870 | 17..182 | 100 | | Minus |
arm_X | 2144477..2144613 | 728..864 | 100 | <- | Minus |
arm_X | 2144680..2144982 | 425..727 | 100 | <- | Minus |
BS05886.pep Sequence
Translation from 16 to 945
> BS05886.pep
MSRIGVRETGASGTSEQLQREQDSDTSEQAVRKQERDLKELLEWFRQNDK
LPKEIDPLLLRRFYQCMFGDVEETRKLIEVNYALRNRHPHLFIKRDPLDA
DSKRTFDYADILPLPGLTPDKCKVSLYCFREFEASKMHHTEDTRAFFMVS
DCRFVTPDDLAKPDVLSEGEVQIFDMKGTTMRHISRLTISTLRAYIKFLQ
LAFPVRLRAIHMINCPTYLDRIVSVVKPFISDEVFKLIRFHTQSINTLYE
FVPREMLPEEYGGGAGSLEALRTHTQKALVEHRDYLMDPDHWVVVKPEKR
NESSWRFFK*
BS05886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3191-PC | 309 | CG3191-PC | 1..309 | 1..309 | 1625 | 100 | Plus |
CG3191-PA | 309 | CG3191-PA | 1..309 | 1..309 | 1625 | 100 | Plus |
CG3823-PA | 295 | CG3823-PA | 17..277 | 38..302 | 684 | 46.8 | Plus |
CG3091-PC | 303 | CG3091-PC | 8..303 | 20..308 | 582 | 38.3 | Plus |
CG3091-PA | 303 | CG3091-PA | 8..303 | 20..308 | 582 | 38.3 | Plus |