Clone Sequence Records
BS05888.3prime Sequence
776 bp (773 high quality bases) assembled on 2005-12-03
> BS05888.3prime
ATGGTCTAGAAAGCTTTCATACAGCAATGCCCGTTTTGTCTGCAATGAAG
CCGAGGAAGGACGAGACCCGTGCGTATCCAGATGGTAGCCGGTATGTGCA
TTGATCCTCAGCGACGAATGAGTTGATGCCAATTTGTTGCCATTGTTGGA
TGGTTTTGTTGTACAGAATGAGAGGACCGCCAGAGTCGCCGGTGCAAGTG
GACATGTCGCTACCATCGAATCCTTTGGCACACATGGTCGAGTCCACTAC
AACATATTTACCATAGATGGCCACACAATCCGCATTGTCAATGATCTCGA
CTTGGGCATACAAAAGGGTTTCCGAGTAGTCCAGGTACTCATCTTCCGTA
TAACCGAATCCAGCGATTGTGGCCACGCTGCCCACATAATCGATCGAGTC
CCCGTACTGGCCGACCAGTTGTATGGCCTGAATGTTGGCCGAGAATGTCA
GTGGTTCTGGCAGTTGGATCAGCGAGACATCGTTATTCAATTTGTCATTG
TAGTCCGGATGGATTATGATATTGTTGGACGTCATGTTCAGGGCATTCGC
GTTAAACAGATCCACAGTGCCGAACATCAGGAAGATGGAGCTCAGGCCAT
TTGTACAATGGGCCGCCGTGAGCACCCAGGTGTCCGATATGATCGATCCT
CCGCAAAGTAGATCATCCCAGGCATCTCTCTTCAGTATGACCTGCCAGGG
AAACTGGCCCAATTTCGCATCGCTACCGGACACTATGCGATTATCTATTT
TTATCGGTGAACTGTTGGCAGGATCA
BS05888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-PA | 831 | CG8952-RA | 72..831 | 776..17 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-RA | 902 | CG8952-RA | 106..867 | 776..15 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15765505..15766235 | 15..745 | 3655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:31:30 has no hits.
BS05888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:22 Download gff for
BS05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-PA | 73..831 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:57 Download gff for
BS05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-PA | 73..831 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:36 Download gff for
BS05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 107..867 | 15..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:42 Download gff for
BS05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 107..867 | 15..775 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:42 Download gff for
BS05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15765505..15766235 | 15..745 | 100 | <- | Plus |
X | 15766310..15766339 | 746..775 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:36 Download gff for
BS05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15659538..15660268 | 15..745 | 100 | <- | Plus |
arm_X | 15660343..15660372 | 746..775 | 100 | | Plus |
BS05888.5prime Sequence
861 bp (754 high quality bases) assembled on 2005-12-03
> BS05888.5prime
GAAGTTATCAGTCGACATGGCGCTGAATAGCGAGCGATCCTTGATGCTAG
TCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCAAC
AGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCGAA
ATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGATG
ATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGGCG
GCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACTGT
GGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCATAA
TCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCCAA
CTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTGGT
CGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAATCG
CTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCCTT
TTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATCTA
TGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGATG
GTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTCTG
TACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTCGT
CGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGTCT
CGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTATGAAAG
CTTTCTAGACC
BS05888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-PA | 831 | CG8952-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-RA | 902 | CG8952-RA | 32..867 | 14..849 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15765505..15766235 | 849..119 | 3655 | 100 | Minus |
X | 23542271 | X | 15766309..15766414 | 119..14 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:06:05 has no hits.
BS05888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:23 Download gff for
BS05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:58 Download gff for
BS05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:11 Download gff for
BS05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 29..867 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:46 Download gff for
BS05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 29..867 | 9..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:46 Download gff for
BS05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15765505..15766235 | 119..849 | 100 | <- | Minus |
X | 15766310..15766417 | 9..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:11 Download gff for
BS05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15659538..15660268 | 119..849 | 100 | <- | Minus |
arm_X | 15660343..15660450 | 9..118 | 97 | | Minus |
BS05888.complete Sequence
863 bp (863 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635284
> BS05888.complete
GAAGTTATCAGTCGACATGGCGCTGAATAGCGAGCGATCCTTGATGCTAG
TCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCAAC
AGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCGAA
ATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGATG
ATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGGCG
GCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACTGT
GGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCATAA
TCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCCAA
CTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTGGT
CGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAATCG
CTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCCTT
TTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATCTA
TGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGATG
GTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTCTG
TACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTCGT
CGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGTCT
CGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTATGAAAG
CTTTCTAGACCAT
BS05888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-RA | 831 | CG8952-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-RA | 902 | CG8952-RA | 32..867 | 14..849 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15765505..15766235 | 849..119 | 3655 | 100 | Minus |
X | 23542271 | X | 15766309..15766414 | 119..14 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:41:01 has no hits.
BS05888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:04 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:21 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 13..851 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:19 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 35..864 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:04 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 13..851 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:03 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8952-RA | 35..864 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:03 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15765508..15766235 | 119..846 | 100 | <- | Minus |
X | 15766310..15766411 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:19 Download gff for
BS05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15659541..15660268 | 119..846 | 100 | <- | Minus |
arm_X | 15660343..15660444 | 17..118 | 100 | | Minus |
BS05888.pep Sequence
Translation from 16 to 846
> BS05888.pep
MALNSERSLMLVLLAAISVVGQPFDPANSSPIKIDNRIVSGSDAKLGQFP
WQVILKRDAWDDLLCGGSIISDTWVLTAAHCTNGLSSIFLMFGTVDLFNA
NALNMTSNNIIIHPDYNDKLNNDVSLIQLPEPLTFSANIQAIQLVGQYGD
SIDYVGSVATIAGFGYTEDEYLDYSETLLYAQVEIIDNADCVAIYGKYVV
VDSTMCAKGFDGSDMSTCTGDSGGPLILYNKTIQQWQQIGINSFVAEDQC
TYRLPSGYARVSSFLGFIADKTGIAV*
BS05888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8952-PA | 276 | CG8952-PA | 1..276 | 1..276 | 1431 | 100 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 34..271 | 34..274 | 426 | 40.8 | Plus |
CG10477-PB | 272 | CG10477-PB | 6..270 | 12..274 | 418 | 37.6 | Plus |
CG10477-PA | 272 | CG10477-PA | 6..270 | 12..274 | 418 | 37.6 | Plus |
Jon65Aiii-PA | 274 | CG6483-PA | 36..273 | 34..275 | 390 | 36.7 | Plus |