Clone BS05888 Report

Search the DGRC for BS05888

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG8952-RA
Protein status:BS05888.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05888.3prime Sequence

776 bp (773 high quality bases) assembled on 2005-12-03

> BS05888.3prime
ATGGTCTAGAAAGCTTTCATACAGCAATGCCCGTTTTGTCTGCAATGAAG
CCGAGGAAGGACGAGACCCGTGCGTATCCAGATGGTAGCCGGTATGTGCA
TTGATCCTCAGCGACGAATGAGTTGATGCCAATTTGTTGCCATTGTTGGA
TGGTTTTGTTGTACAGAATGAGAGGACCGCCAGAGTCGCCGGTGCAAGTG
GACATGTCGCTACCATCGAATCCTTTGGCACACATGGTCGAGTCCACTAC
AACATATTTACCATAGATGGCCACACAATCCGCATTGTCAATGATCTCGA
CTTGGGCATACAAAAGGGTTTCCGAGTAGTCCAGGTACTCATCTTCCGTA
TAACCGAATCCAGCGATTGTGGCCACGCTGCCCACATAATCGATCGAGTC
CCCGTACTGGCCGACCAGTTGTATGGCCTGAATGTTGGCCGAGAATGTCA
GTGGTTCTGGCAGTTGGATCAGCGAGACATCGTTATTCAATTTGTCATTG
TAGTCCGGATGGATTATGATATTGTTGGACGTCATGTTCAGGGCATTCGC
GTTAAACAGATCCACAGTGCCGAACATCAGGAAGATGGAGCTCAGGCCAT
TTGTACAATGGGCCGCCGTGAGCACCCAGGTGTCCGATATGATCGATCCT
CCGCAAAGTAGATCATCCCAGGCATCTCTCTTCAGTATGACCTGCCAGGG
AAACTGGCCCAATTTCGCATCGCTACCGGACACTATGCGATTATCTATTT
TTATCGGTGAACTGTTGGCAGGATCA

BS05888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-PA 831 CG8952-RA 72..831 776..17 3800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-RA 902 CG8952-RA 106..867 776..15 3810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15765505..15766235 15..745 3655 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:31:30 has no hits.

BS05888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:22 Download gff for BS05888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-PA 73..831 17..775 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:57 Download gff for BS05888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-PA 73..831 17..775 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:36 Download gff for BS05888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 107..867 15..775 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:42 Download gff for BS05888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 107..867 15..775 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:42 Download gff for BS05888.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15765505..15766235 15..745 100 <- Plus
X 15766310..15766339 746..775 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:36 Download gff for BS05888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15659538..15660268 15..745 100 <- Plus
arm_X 15660343..15660372 746..775 100   Plus

BS05888.5prime Sequence

861 bp (754 high quality bases) assembled on 2005-12-03

> BS05888.5prime
GAAGTTATCAGTCGACATGGCGCTGAATAGCGAGCGATCCTTGATGCTAG
TCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCAAC
AGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCGAA
ATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGATG
ATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGGCG
GCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACTGT
GGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCATAA
TCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCCAA
CTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTGGT
CGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAATCG
CTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCCTT
TTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATCTA
TGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGATG
GTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTCTG
TACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTCGT
CGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGTCT
CGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTATGAAAG
CTTTCTAGACC

BS05888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-PA 831 CG8952-RA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-RA 902 CG8952-RA 32..867 14..849 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15765505..15766235 849..119 3655 100 Minus
X 23542271 X 15766309..15766414 119..14 530 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:06:05 has no hits.

BS05888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:23 Download gff for BS05888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:58 Download gff for BS05888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:11 Download gff for BS05888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 29..867 9..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:46 Download gff for BS05888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 29..867 9..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:46 Download gff for BS05888.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15765505..15766235 119..849 100 <- Minus
X 15766310..15766417 9..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:11 Download gff for BS05888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15659538..15660268 119..849 100 <- Minus
arm_X 15660343..15660450 9..118 97   Minus

BS05888.complete Sequence

863 bp (863 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635284

> BS05888.complete
GAAGTTATCAGTCGACATGGCGCTGAATAGCGAGCGATCCTTGATGCTAG
TCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCAAC
AGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCGAA
ATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGATG
ATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGGCG
GCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACTGT
GGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCATAA
TCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCCAA
CTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTGGT
CGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAATCG
CTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCCTT
TTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATCTA
TGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGATG
GTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTCTG
TACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTCGT
CGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGTCT
CGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTATGAAAG
CTTTCTAGACCAT

BS05888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-RA 831 CG8952-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-RA 902 CG8952-RA 32..867 14..849 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15765505..15766235 849..119 3655 100 Minus
X 23542271 X 15766309..15766414 119..14 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:41:01 has no hits.

BS05888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:04 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:21 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 13..851 9..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:19 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 35..864 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:04 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 13..851 9..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:03 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8952-RA 35..864 17..846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:03 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
X 15765508..15766235 119..846 100 <- Minus
X 15766310..15766411 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:19 Download gff for BS05888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15659541..15660268 119..846 100 <- Minus
arm_X 15660343..15660444 17..118 100   Minus

BS05888.pep Sequence

Translation from 16 to 846

> BS05888.pep
MALNSERSLMLVLLAAISVVGQPFDPANSSPIKIDNRIVSGSDAKLGQFP
WQVILKRDAWDDLLCGGSIISDTWVLTAAHCTNGLSSIFLMFGTVDLFNA
NALNMTSNNIIIHPDYNDKLNNDVSLIQLPEPLTFSANIQAIQLVGQYGD
SIDYVGSVATIAGFGYTEDEYLDYSETLLYAQVEIIDNADCVAIYGKYVV
VDSTMCAKGFDGSDMSTCTGDSGGPLILYNKTIQQWQQIGINSFVAEDQC
TYRLPSGYARVSSFLGFIADKTGIAV*

BS05888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8952-PA 276 CG8952-PA 1..276 1..276 1431 100 Plus
Jon65Aiv-PA 271 CG6467-PA 34..271 34..274 426 40.8 Plus
CG10477-PB 272 CG10477-PB 6..270 12..274 418 37.6 Plus
CG10477-PA 272 CG10477-PA 6..270 12..274 418 37.6 Plus
Jon65Aiii-PA 274 CG6483-PA 36..273 34..275 390 36.7 Plus