Clone BS05889 Report

Search the DGRC for BS05889

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG5339-RA
Protein status:BS05889.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05889.3prime Sequence

863 bp (740 high quality bases) assembled on 2005-12-03

> BS05889.3prime
ATGGTCTAGAAAGCTTCTAGAATGTCTTCTTGGAAATGACAACAATTAAA
TCGATTAACCAATAGAACGACTGGTGGAGATCACCCTCGCACAAGTACGG
CGCCTTGGTCCATGCCTCCACGCGGTAGCCACAGTTCTCCAGCAGCTCCA
TAAACCTGGCCGCCTCCTCCTCGAACGACGCCTGTCGCCCGTTGTTCTCC
AGCAGCGGGCGCAGCGGCAGATGCGAGGTATTCGTCTCCACGTAGTGCAT
GTAGGGAAGTACTAAGGCCACAACTGCTCGACCATTGGGAGCTAGTGCCA
GGTGAATGTCCTCGAGCAGCTTGAATGAATCGAAGCAGCGGTCCAATACG
TTGAGGCACAGAATCAATTCCAGGTTCTGCAGACCGTCTATCTCGGTGAT
TACGTTGAAGTTCAGCTTCTTCAGCCGATCGCGCATGGTCCAACTGGCCT
CGGTGGCGAAGACCCGCAGCCCGGCACTTCCGCTCAGCTCGGAAACGGTG
TTGGCCACGCGCAGCGAAATCTCACCGTCCCCGGCTCCGATATCCAGCAA
CGTGACAGGTTCTTGACCGCTGGCAGGCTGAAAGCCGCCTGCTACTAGCA
GCTTGCGAAACTGTTCCTCGGACAGTATGAACATGGAGCCGCGCTTCAGG
AACCCGTTGATGTCCGTCTGGGTCATGAAGAACTGCAGGATTGAGCGAGC
CAGGGCGTGCCACAAGTGGGTCCAGATGTTTGCCGAAAGCGCCTTGGTGC
GCTCCAGCCAGCTCACGGTGGTGGCATCCGGCTCGAGCGGCACGAACTTG
GACTGGAATCTCGGCGGCAGCTCGTGGTTCAGGCAGTACCACTTCCGAGT
GTCTATGTCCTCC

BS05889.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 918 CG5339-RA 72..918 863..17 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1239 CG5339-RA 171..1018 863..16 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23897117..23897657 16..556 2705 100 Plus
2R 25286936 2R 23897713..23898001 555..843 1445 100 Plus
Blast to na_te.dros performed 2015-01-31 17:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 2193..2250 69..13 116 69 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 10075..10132 69..13 116 69 Minus

BS05889.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:24 Download gff for BS05889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 72..918 17..863 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:59 Download gff for BS05889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 72..918 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:53 Download gff for BS05889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 171..1018 16..863 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:38 Download gff for BS05889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 171..1018 16..863 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:38 Download gff for BS05889.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23897117..23897657 16..556 100 <- Plus
2R 23897715..23897999 557..841 100 <- Plus
2R 23898055..23898076 842..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:53 Download gff for BS05889.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19785238..19785522 557..841 100 <- Plus
arm_2R 19785578..19785599 842..863 100   Plus
arm_2R 19784640..19785180 16..556 100 <- Plus

BS05889.5prime Sequence

841 bp (828 high quality bases) assembled on 2005-12-03

> BS05889.5prime
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTAT
GGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGA

BS05889.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 918 CG5339-RA 1..739 17..755 3695 100 Plus
CG5339-PA 918 CG5339-RA 740..826 755..841 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1239 CG5339-RA 99..925 16..841 4110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23897210..23897657 841..395 2190 99.8 Minus
2R 25286936 2R 23897713..23898001 396..108 1445 100 Minus
2R 25286936 2R 23898055..23898148 109..16 470 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:57:50 has no hits.

BS05889.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:25 Download gff for BS05889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 1..825 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:00 Download gff for BS05889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 1..825 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:02 Download gff for BS05889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 91..924 8..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:26 Download gff for BS05889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 91..924 8..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:26 Download gff for BS05889.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23897211..23897657 395..840 99 <- Minus
2R 23897715..23897999 110..394 100 <- Minus
2R 23898055..23898156 8..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:02 Download gff for BS05889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19784734..19785180 395..840 99 <- Minus
arm_2R 19785238..19785522 110..394 100 <- Minus
arm_2R 19785578..19785679 8..109 96   Minus

BS05889.complete Sequence

950 bp (950 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635285

> BS05889.complete
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGAACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTA
TGGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCG
CCGTACTTGTGCGAGGGTGATCTCCACCAGTCGTTCTATTGGTTAATCGA
TTTAATTGTTGTCATTTCCAAGAAGACATTCTAGAAGCTTTCTAGACCAT

BS05889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 918 CG5339-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1239 CG5339-RA 99..1018 16..935 4600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23897117..23897657 935..395 2705 100 Minus
2R 25286936 2R 23897713..23898001 396..108 1445 100 Minus
2R 25286936 2R 23898055..23898148 109..16 470 100 Minus
Blast to na_te.dros performed 2014-11-27 08:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 2193..2250 882..938 116 69 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 10075..10132 882..938 116 69 Plus

BS05889.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:05 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:23 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 79..1006 8..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:12 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 100..1017 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:06 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 79..1006 8..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:08 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 100..1017 17..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:08 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23897118..23897657 395..934 100 <- Minus
2R 23897715..23897999 110..394 100 <- Minus
2R 23898055..23898147 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:12 Download gff for BS05889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19784641..19785180 395..934 100 <- Minus
arm_2R 19785238..19785522 110..394 100 <- Minus
arm_2R 19785578..19785670 17..109 100   Minus

BS05889.pep Sequence

Translation from 16 to 933

> BS05889.pep
MAVYRPRGTLARVIHAKFHNDNSLEDIDTRKWYCLNHELPPRFQSKFVPL
EPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGS
MFILSEEQFRKLLVAGGFQPASGQEPVTLLDIGAGDGEISLRVANTVSEL
SGSAGLRVFATEASWTMRDRLKKLNFNVITEIDGLQNLELILCLNVLDRC
FDSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNTSHLPLRPLLENNGR
QASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLHQSFYWLIDLIVVI
SKKTF*

BS05889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 305 CG5339-PA 1..305 1..305 1596 100 Plus