Clone Sequence Records
BS05889.3prime Sequence
863 bp (740 high quality bases) assembled on 2005-12-03
> BS05889.3prime
ATGGTCTAGAAAGCTTCTAGAATGTCTTCTTGGAAATGACAACAATTAAA
TCGATTAACCAATAGAACGACTGGTGGAGATCACCCTCGCACAAGTACGG
CGCCTTGGTCCATGCCTCCACGCGGTAGCCACAGTTCTCCAGCAGCTCCA
TAAACCTGGCCGCCTCCTCCTCGAACGACGCCTGTCGCCCGTTGTTCTCC
AGCAGCGGGCGCAGCGGCAGATGCGAGGTATTCGTCTCCACGTAGTGCAT
GTAGGGAAGTACTAAGGCCACAACTGCTCGACCATTGGGAGCTAGTGCCA
GGTGAATGTCCTCGAGCAGCTTGAATGAATCGAAGCAGCGGTCCAATACG
TTGAGGCACAGAATCAATTCCAGGTTCTGCAGACCGTCTATCTCGGTGAT
TACGTTGAAGTTCAGCTTCTTCAGCCGATCGCGCATGGTCCAACTGGCCT
CGGTGGCGAAGACCCGCAGCCCGGCACTTCCGCTCAGCTCGGAAACGGTG
TTGGCCACGCGCAGCGAAATCTCACCGTCCCCGGCTCCGATATCCAGCAA
CGTGACAGGTTCTTGACCGCTGGCAGGCTGAAAGCCGCCTGCTACTAGCA
GCTTGCGAAACTGTTCCTCGGACAGTATGAACATGGAGCCGCGCTTCAGG
AACCCGTTGATGTCCGTCTGGGTCATGAAGAACTGCAGGATTGAGCGAGC
CAGGGCGTGCCACAAGTGGGTCCAGATGTTTGCCGAAAGCGCCTTGGTGC
GCTCCAGCCAGCTCACGGTGGTGGCATCCGGCTCGAGCGGCACGAACTTG
GACTGGAATCTCGGCGGCAGCTCGTGGTTCAGGCAGTACCACTTCCGAGT
GTCTATGTCCTCC
BS05889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-PA | 918 | CG5339-RA | 72..918 | 863..17 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 1239 | CG5339-RA | 171..1018 | 863..16 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23897117..23897657 | 16..556 | 2705 | 100 | Plus |
2R | 25286936 | 2R | 23897713..23898001 | 555..843 | 1445 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 17:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 2193..2250 | 69..13 | 116 | 69 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 10075..10132 | 69..13 | 116 | 69 | Minus |
BS05889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:24 Download gff for
BS05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 72..918 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:59 Download gff for
BS05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 72..918 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:53 Download gff for
BS05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 171..1018 | 16..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:38 Download gff for
BS05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 171..1018 | 16..863 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:38 Download gff for
BS05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23897117..23897657 | 16..556 | 100 | <- | Plus |
2R | 23897715..23897999 | 557..841 | 100 | <- | Plus |
2R | 23898055..23898076 | 842..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:53 Download gff for
BS05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19785238..19785522 | 557..841 | 100 | <- | Plus |
arm_2R | 19785578..19785599 | 842..863 | 100 | | Plus |
arm_2R | 19784640..19785180 | 16..556 | 100 | <- | Plus |
BS05889.5prime Sequence
841 bp (828 high quality bases) assembled on 2005-12-03
> BS05889.5prime
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTAT
GGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGA
BS05889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-PA | 918 | CG5339-RA | 1..739 | 17..755 | 3695 | 100 | Plus |
CG5339-PA | 918 | CG5339-RA | 740..826 | 755..841 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 1239 | CG5339-RA | 99..925 | 16..841 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23897210..23897657 | 841..395 | 2190 | 99.8 | Minus |
2R | 25286936 | 2R | 23897713..23898001 | 396..108 | 1445 | 100 | Minus |
2R | 25286936 | 2R | 23898055..23898148 | 109..16 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:57:50 has no hits.
BS05889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:25 Download gff for
BS05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 1..825 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:00 Download gff for
BS05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 1..825 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:02 Download gff for
BS05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 91..924 | 8..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:26 Download gff for
BS05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 91..924 | 8..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:26 Download gff for
BS05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23897211..23897657 | 395..840 | 99 | <- | Minus |
2R | 23897715..23897999 | 110..394 | 100 | <- | Minus |
2R | 23898055..23898156 | 8..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:02 Download gff for
BS05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19784734..19785180 | 395..840 | 99 | <- | Minus |
arm_2R | 19785238..19785522 | 110..394 | 100 | <- | Minus |
arm_2R | 19785578..19785679 | 8..109 | 96 | | Minus |
BS05889.complete Sequence
950 bp (950 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635285
> BS05889.complete
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGAACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTA
TGGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCG
CCGTACTTGTGCGAGGGTGATCTCCACCAGTCGTTCTATTGGTTAATCGA
TTTAATTGTTGTCATTTCCAAGAAGACATTCTAGAAGCTTTCTAGACCAT
BS05889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 918 | CG5339-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 1239 | CG5339-RA | 99..1018 | 16..935 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23897117..23897657 | 935..395 | 2705 | 100 | Minus |
2R | 25286936 | 2R | 23897713..23898001 | 396..108 | 1445 | 100 | Minus |
2R | 25286936 | 2R | 23898055..23898148 | 109..16 | 470 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 2193..2250 | 882..938 | 116 | 69 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 10075..10132 | 882..938 | 116 | 69 | Plus |
BS05889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:05 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:23 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 79..1006 | 8..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:12 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 100..1017 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:06 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 79..1006 | 8..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:08 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 100..1017 | 17..934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:08 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23897118..23897657 | 395..934 | 100 | <- | Minus |
2R | 23897715..23897999 | 110..394 | 100 | <- | Minus |
2R | 23898055..23898147 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:12 Download gff for
BS05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19784641..19785180 | 395..934 | 100 | <- | Minus |
arm_2R | 19785238..19785522 | 110..394 | 100 | <- | Minus |
arm_2R | 19785578..19785670 | 17..109 | 100 | | Minus |
BS05889.pep Sequence
Translation from 16 to 933
> BS05889.pep
MAVYRPRGTLARVIHAKFHNDNSLEDIDTRKWYCLNHELPPRFQSKFVPL
EPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGS
MFILSEEQFRKLLVAGGFQPASGQEPVTLLDIGAGDGEISLRVANTVSEL
SGSAGLRVFATEASWTMRDRLKKLNFNVITEIDGLQNLELILCLNVLDRC
FDSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNTSHLPLRPLLENNGR
QASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLHQSFYWLIDLIVVI
SKKTF*
BS05889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-PA | 305 | CG5339-PA | 1..305 | 1..305 | 1596 | 100 | Plus |