Clone BS05890 Report

Search the DGRC for BS05890

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptTrs31-RA
Protein status:BS05890.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05890.5prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS05890.5prime
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAATA
AAAGCTTTCTAGACC

BS05890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10153-PA 585 CG10153-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 666 CG10153-RA 66..651 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14757241..14757552 502..191 1560 100 Minus
2R 25286936 2R 14757606..14757781 192..17 880 100 Minus
2R 25286936 2R 14757079..14757178 602..503 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:16:27 has no hits.

BS05890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:27 Download gff for BS05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:02 Download gff for BS05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:05 Download gff for BS05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 55..651 5..602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:53 Download gff for BS05890.5prime
Subject Subject Range Query Range Percent Splice Strand
Trs31-RA 55..651 5..602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:53 Download gff for BS05890.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14757241..14757550 193..502 100 <- Minus
2R 14757606..14757792 5..192 97   Minus
2R 14757079..14757178 503..602 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:05 Download gff for BS05890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644584..10644683 503..602 100 <- Minus
arm_2R 10644746..10645055 193..502 100 <- Minus
arm_2R 10645111..10645297 5..192 97   Minus

BS05890.3prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS05890.3prime
ATGGTCTAGAAAGCTTTTATTTCTCCTCCATCTGCTTGTCGCGGGCGATG
ACAAAGTCCTCAAATTTGACCATGTACGTGGTGCCCTTGTGCCAGTGGGC
GGTGACCTTGCACGGAAATCCGCAGTTCGTGAGCACAGCTTCCACGATGC
CAGCGGTGAAATTAGCGCAATTCAGCGAGCCCTTATCCTTTGGCACGCTT
ATGAATGTGTTGACAAGCGGTTCCTTTTCAATTATGTAGTATGTCCTTTC
GTCGTCGTTGGCATGTTCCAGTTTCTCCGCCTCTTTGCCAAAGAGATTCT
TCCACACCGTGGTCTTAACAAAGAGAAGCATTTGGGTTAGTTTTGTTTCT
CGCTTGGAGCTGCGCTCCCTCACGAAATACAGGTCGATTATGCGGGTGCC
TACATCTTGACCCAGATCGTGGAGTCTTGTTTGCAATTCTGGGACTGTAA
ACACTCGGCTCTGCGAGTACTGGACGATTTCGCTGAAAAGCAGCGCCACA
ATGCTCTGGGAAACCTCCGTTTTGCCCTTGGATAGTGGTCTGTCTAGGAT
GTTGCTGCGCGGACGCATCGAGGATATTTTTAGGGCCTCCAGTTTTTCCA
TGTCGACTGATAACT

BS05890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10153-PA 585 CG10153-RA 1..585 601..17 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 666 CG10153-RA 66..651 601..16 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14757241..14757552 116..427 1560 100 Plus
2R 25286936 2R 14757606..14757781 426..601 880 100 Plus
2R 25286936 2R 14757079..14757178 16..115 500 100 Plus
Blast to na_te.dros performed on 2015-02-13 14:18:56 has no hits.

BS05890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:26 Download gff for BS05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:01 Download gff for BS05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:04:28 Download gff for BS05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 55..651 16..613 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:59 Download gff for BS05890.3prime
Subject Subject Range Query Range Percent Splice Strand
Trs31-RA 55..651 16..613 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:59 Download gff for BS05890.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14757079..14757178 16..115 100 <- Plus
2R 14757241..14757550 116..425 100 <- Plus
2R 14757606..14757792 426..613 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:28 Download gff for BS05890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644584..10644683 16..115 100 <- Plus
arm_2R 10644746..10645055 116..425 100 <- Plus
arm_2R 10645111..10645297 426..613 97   Plus

BS05890.complete Sequence

617 bp (617 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635286

> BS05890.complete
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAATA
AAAGCTTTCTAGACCAT

BS05890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 585 CG10153-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 666 CG10153-RA 66..651 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14757241..14757552 502..191 1560 100 Minus
2R 25286936 2R 14757606..14757781 192..17 880 100 Minus
2R 25286936 2R 14757079..14757178 602..503 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:36:40 has no hits.

BS05890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:07 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:24 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 38..634 5..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:36 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 66..642 17..593 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:07 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 38..634 5..602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:53 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
Trs31-RA 66..642 17..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:53 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14757606..14757781 17..192 100   Minus
2R 14757088..14757178 503..593 100 <- Minus
2R 14757241..14757550 193..502 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:36 Download gff for BS05890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644593..10644683 503..593 100 <- Minus
arm_2R 10644746..10645055 193..502 100 <- Minus
arm_2R 10645111..10645286 17..192 100   Minus

BS05890.pep Sequence

Translation from 16 to 600

> BS05890.pep
MEKLEALKISSMRPRSNILDRPLSKGKTEVSQSIVALLFSEIVQYSQSRV
FTVPELQTRLHDLGQDVGTRIIDLYFVRERSSKRETKLTQMLLFVKTTVW
KNLFGKEAEKLEHANDDERTYYIIEKEPLVNTFISVPKDKGSLNCANFTA
GIVEAVLTNCGFPCKVTAHWHKGTTYMVKFEDFVIARDKQMEEK*

BS05890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-PA 194 CG10153-PA 1..194 1..194 995 100 Plus