Clone Sequence Records
BS05890.5prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-03
> BS05890.5prime
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAATA
AAAGCTTTCTAGACC
BS05890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10153-PA | 585 | CG10153-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 666 | CG10153-RA | 66..651 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14757241..14757552 | 502..191 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 14757606..14757781 | 192..17 | 880 | 100 | Minus |
2R | 25286936 | 2R | 14757079..14757178 | 602..503 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:16:27 has no hits.
BS05890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:27 Download gff for
BS05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:02 Download gff for
BS05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:05 Download gff for
BS05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 55..651 | 5..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:40:53 Download gff for
BS05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs31-RA | 55..651 | 5..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:40:53 Download gff for
BS05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14757241..14757550 | 193..502 | 100 | <- | Minus |
2R | 14757606..14757792 | 5..192 | 97 | | Minus |
2R | 14757079..14757178 | 503..602 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:05 Download gff for
BS05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644584..10644683 | 503..602 | 100 | <- | Minus |
arm_2R | 10644746..10645055 | 193..502 | 100 | <- | Minus |
arm_2R | 10645111..10645297 | 5..192 | 97 | | Minus |
BS05890.3prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-03
> BS05890.3prime
ATGGTCTAGAAAGCTTTTATTTCTCCTCCATCTGCTTGTCGCGGGCGATG
ACAAAGTCCTCAAATTTGACCATGTACGTGGTGCCCTTGTGCCAGTGGGC
GGTGACCTTGCACGGAAATCCGCAGTTCGTGAGCACAGCTTCCACGATGC
CAGCGGTGAAATTAGCGCAATTCAGCGAGCCCTTATCCTTTGGCACGCTT
ATGAATGTGTTGACAAGCGGTTCCTTTTCAATTATGTAGTATGTCCTTTC
GTCGTCGTTGGCATGTTCCAGTTTCTCCGCCTCTTTGCCAAAGAGATTCT
TCCACACCGTGGTCTTAACAAAGAGAAGCATTTGGGTTAGTTTTGTTTCT
CGCTTGGAGCTGCGCTCCCTCACGAAATACAGGTCGATTATGCGGGTGCC
TACATCTTGACCCAGATCGTGGAGTCTTGTTTGCAATTCTGGGACTGTAA
ACACTCGGCTCTGCGAGTACTGGACGATTTCGCTGAAAAGCAGCGCCACA
ATGCTCTGGGAAACCTCCGTTTTGCCCTTGGATAGTGGTCTGTCTAGGAT
GTTGCTGCGCGGACGCATCGAGGATATTTTTAGGGCCTCCAGTTTTTCCA
TGTCGACTGATAACT
BS05890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10153-PA | 585 | CG10153-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 666 | CG10153-RA | 66..651 | 601..16 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14757241..14757552 | 116..427 | 1560 | 100 | Plus |
2R | 25286936 | 2R | 14757606..14757781 | 426..601 | 880 | 100 | Plus |
2R | 25286936 | 2R | 14757079..14757178 | 16..115 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:18:56 has no hits.
BS05890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:26 Download gff for
BS05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:01 Download gff for
BS05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:04:28 Download gff for
BS05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 55..651 | 16..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:59 Download gff for
BS05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs31-RA | 55..651 | 16..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:59 Download gff for
BS05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14757079..14757178 | 16..115 | 100 | <- | Plus |
2R | 14757241..14757550 | 116..425 | 100 | <- | Plus |
2R | 14757606..14757792 | 426..613 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:04:28 Download gff for
BS05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644584..10644683 | 16..115 | 100 | <- | Plus |
arm_2R | 10644746..10645055 | 116..425 | 100 | <- | Plus |
arm_2R | 10645111..10645297 | 426..613 | 97 | | Plus |
BS05890.complete Sequence
617 bp (617 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635286
> BS05890.complete
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAATA
AAAGCTTTCTAGACCAT
BS05890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 585 | CG10153-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 666 | CG10153-RA | 66..651 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14757241..14757552 | 502..191 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 14757606..14757781 | 192..17 | 880 | 100 | Minus |
2R | 25286936 | 2R | 14757079..14757178 | 602..503 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:36:40 has no hits.
BS05890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:07 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:24 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 38..634 | 5..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:36 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 66..642 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:07 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 38..634 | 5..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:53 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs31-RA | 66..642 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:53 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14757606..14757781 | 17..192 | 100 | | Minus |
2R | 14757088..14757178 | 503..593 | 100 | <- | Minus |
2R | 14757241..14757550 | 193..502 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:36 Download gff for
BS05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644593..10644683 | 503..593 | 100 | <- | Minus |
arm_2R | 10644746..10645055 | 193..502 | 100 | <- | Minus |
arm_2R | 10645111..10645286 | 17..192 | 100 | | Minus |
BS05890.pep Sequence
Translation from 16 to 600
> BS05890.pep
MEKLEALKISSMRPRSNILDRPLSKGKTEVSQSIVALLFSEIVQYSQSRV
FTVPELQTRLHDLGQDVGTRIIDLYFVRERSSKRETKLTQMLLFVKTTVW
KNLFGKEAEKLEHANDDERTYYIIEKEPLVNTFISVPKDKGSLNCANFTA
GIVEAVLTNCGFPCKVTAHWHKGTTYMVKFEDFVIARDKQMEEK*
BS05890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-PA | 194 | CG10153-PA | 1..194 | 1..194 | 995 | 100 | Plus |