Clone BS05892 Report

Search the DGRC for BS05892

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG10307-RA
Protein status:BS05892.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05892.3prime Sequence

934 bp (851 high quality bases) assembled on 2005-12-03

> BS05892.3prime
ATGGTCTAGAAAGCTTTCAAAAGGTGGTGACAAAGCGCGACATTTCCGGC
AGCATGACACTCAGATCCTCGATGTTGTTCTCCAGCGCACTCTCGTCCGT
TGTGTCCAGTTCGCTGGTCCGCACGCTGTTCGCCCAGTCGGAGGAGTCTA
GATCCTGTCCTGCTCCTCGCGCCTGATCCTCCTGCTGTTCCTGGGCGTTG
AGGCTAGCTCGACTGGCGAGACCATCGCAAATATTGGCGGGATCTGACGG
CAGCTCCACATAAAGGTTCGTCTGGCGCAAAGCCATTAGCTGTAGATCGC
GGTGCAGGCTGATGGGATTCTTGGACAGGTTGAGCATGTGAAGAGTCCGC
AACTCCTCCAGTTGTGACCGCGTGGGCATCTCGTCAATACAATTTTCGTT
GAGAAAAGCAAACCGCAGCTTCTGCATGGCCATCAGCATCCTGGGCAGCC
GTCGCAATCGATTCCCCTTAAGATTCAGATGCACCAAATTTCCCAGCAAC
GCCATGGTCAGTGGCACTTCGCTGAGTTCGCAGCCCTCGGCTGTTAGCCA
ACGCAGGGAGGACAGAGCGCCTATGGCATCGGGCAACTTCTTCAAGGGAT
TTCCCCGTACGCCCAGCGTCTCGAGGTGTTCACAGTTACGAATTTCGTTG
GGCAGCTCCAGGAGCCCAGTATTATTGCACCAGAACGTCTCCAGCTGAGT
GAGGTATCCCAGTTCGGGTGGCAAACTACTAATGTTATTGCAGCTGATGT
TGAGAAACTTCAGCCGGACCAAACGACAGATGCAGAGCGGGAATTCGTCC
AGTTTATTGTAGTCCAACGTGAGGACCTGAAGTCGCATCAAACTACCAAT
GGAGGATGGGATCTTTTGTAGCTTGTTTTGGTTGAGGAACAGCTTCATCA
GCGTCTCGCACTTCTCTATGATGCCCGGAACGTC

BS05892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-PA 1026 CG10307-RA 109..1026 934..17 4515 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-RB 1177 CG10307-RB 194..1112 934..16 4550 99.7 Minus
CG10307-RA 1362 CG10307-RA 379..1297 934..16 4550 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21689282..21689868 864..278 2920 99.8 Minus
2R 25286936 2R 21689926..21690188 278..16 1315 100 Minus
2R 25286936 2R 21689151..21689216 934..869 330 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:24:31 has no hits.

BS05892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:31 Download gff for BS05892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-PA 109..1026 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:07 Download gff for BS05892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-PA 109..1026 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:12 Download gff for BS05892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 240..1164 10..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:41 Download gff for BS05892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 379..1303 10..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:41 Download gff for BS05892.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21689151..21689222 863..934 97 -> Minus
2R 21689284..21689868 278..862 99 -> Minus
2R 21689927..21690194 10..277 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:12 Download gff for BS05892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17576656..17576727 863..934 97 -> Minus
arm_2R 17576789..17577373 278..862 99 -> Minus
arm_2R 17577432..17577699 10..277 99   Minus

BS05892.5prime Sequence

891 bp (812 high quality bases) assembled on 2005-12-03

> BS05892.5prime
GAAGTTATCAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACT
ACGTGCTGGCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTG
AATCTGTCCCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTG
CGAGACGCTGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTC
CATCCTCCATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTAC
AATAAACTGGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAA
GTTTCTCAACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGG
GATACCTCACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTG
GAGCTGCCCAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGT
ACGGGGAAATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCT
CCCTGCGTTGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTG
ACCATGGCGTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCG
ATTGCGACGGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTG
CTTTTCTCAACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTG
GAGGAGTTGCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAG
CCTGCACCGCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATG
TGGAGCTGCCGTCAGATCCCGCCAAATATTGCGATGGTCTCGCCAGTCGA
GCTAGCCTCAACGCCCAGGAACAGCAGGAGGATCANGCGCG

BS05892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-PA 1026 CG10307-RA 1..809 17..825 4045 100 Plus
CG10307-PA 1026 CG10307-RA 813..875 829..891 296 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-RB 1177 CG10307-RB 82..960 13..891 4339 99.7 Plus
CG10307-RA 1362 CG10307-RA 267..1145 13..891 4339 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21689282..21689868 195..781 2935 100 Plus
2R 25286936 2R 21689039..21689222 13..196 920 100 Plus
2R 25286936 2R 21689926..21690036 781..891 499 96.4 Plus
Blast to na_te.dros performed on 2015-02-11 16:20:36 has no hits.

BS05892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:32 Download gff for BS05892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:08 Download gff for BS05892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:01 Download gff for BS05892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 121..1006 7..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:00 Download gff for BS05892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 260..1145 7..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:00 Download gff for BS05892.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21689032..21689222 7..196 98 -> Plus
2R 21689284..21689868 197..781 100 -> Plus
2R 21689927..21690036 782..891 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:01 Download gff for BS05892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17576537..17576727 7..196 98 -> Plus
arm_2R 17576789..17577373 197..781 100 -> Plus
arm_2R 17577432..17577541 782..891 97   Plus

BS05892.complete Sequence

1058 bp (1058 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635287

> BS05892.complete
GAAGTTATCAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACT
ACGTGCTGGCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTG
AATCTGTCCCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTG
CGAGACGCTGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTC
CATCCTCCATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTAC
AATAAACTGGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAA
GTTTCTCAACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGG
GATACCTCACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTG
GAGCTGCCCAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGT
ACGGGGAAATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCT
CCCTGCGTTGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTG
ACCATGGCGTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCG
ATTGCGACGGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTG
CTTTTCTCAACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTG
GAGGAGTTGCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAG
CCTGCACCGCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATG
TGGAGCTGCCGTCAGATCCCGCCAATATTTGCGATGGTCTCGCCAGTCGA
GCTAGCCTCAACGCCCAGGAACAGCAGGAGGATCAGGCGCGAGGAGCAGG
ACAGGATCTAGACTCCTCCGACTGGGCGAACAGCGTGCGGACCAGCGAAC
TGGACACAACGGACGAGAGTGCGCTGGAGAACAACATCGAGGATCTGAGT
GTCATGCTGCCGGAAATGTCGCGCTTTGTCACCACCTTTTGAAAGCTTTC
TAGACCAT

BS05892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-RB 1026 CG10307-PB 1..1026 17..1042 5130 100 Plus
CG10307-RA 1026 CG10307-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-RB 1177 CG10307-RB 82..1112 13..1043 5155 100 Plus
CG10307-RA 1362 CG10307-RA 267..1297 13..1043 5155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21689282..21689868 195..781 2935 100 Plus
2R 25286936 2R 21689926..21690188 781..1043 1315 100 Plus
2R 25286936 2R 21689039..21689222 13..196 920 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:23:09 has no hits.

BS05892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:09 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:26 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 121..1164 7..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:37:22 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 132..1156 17..1041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:09 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 121..1164 7..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:16 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
CG10307-RA 271..1295 17..1041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:16 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21689043..21689222 17..196 100 -> Plus
2R 21689284..21689868 197..781 100 -> Plus
2R 21689927..21690186 782..1041 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:37:22 Download gff for BS05892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17576548..17576727 17..196 100 -> Plus
arm_2R 17576789..17577373 197..781 100 -> Plus
arm_2R 17577432..17577691 782..1041 100   Plus

BS05892.pep Sequence

Translation from 16 to 1041

> BS05892.pep
MEKVCQFFRNNYVLANCEDAIYKKAFSLNLSHYQISDVPGIIEKCETLMK
LFLNQNKLTKIPSSIGSLMRLQVLTLDYNKLDEFPLCICRLVRLKFLNIS
CNNISSLPPELGYLTQLETFWCNNTGLLELPNEIRNCEHLETLGVRGNPL
KKLPDAIGALSSLRWLTAEGCELSEVPLTMALLGNLVHLNLKGNRLRRLP
RMLMAMQKLRFAFLNENCIDEMPTRSQLEELRTLHMLNLSKNPISLHRDL
QLMALRQTNLYVELPSDPANICDGLASRASLNAQEQQEDQARGAGQDLDS
SDWANSVRTSELDTTDESALENNIEDLSVMLPEMSRFVTTF*

BS05892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10307-PB 341 CG10307-PB 1..341 1..341 1762 100 Plus
CG10307-PA 341 CG10307-PA 1..341 1..341 1762 100 Plus
scrib-PC 1247 CG43398-PC 112..357 29..270 263 32.5 Plus
scrib-PI 1711 CG43398-PI 112..357 29..270 263 32.5 Plus
scrib-PP 1729 CG43398-PP 112..357 29..270 263 32.5 Plus
scrib-PC 1247 CG43398-PC 65..284 28..249 234 28.8 Plus
scrib-PI 1711 CG43398-PI 65..284 28..249 234 28.8 Plus
scrib-PC 1247 CG43398-PC 42..254 28..242 226 30.7 Plus
scrib-PI 1711 CG43398-PI 42..254 28..242 226 30.7 Plus
scrib-PC 1247 CG43398-PC 180..352 28..200 221 31.2 Plus
scrib-PI 1711 CG43398-PI 180..352 28..200 221 31.2 Plus
scrib-PC 1247 CG43398-PC 134..348 28..244 217 30.4 Plus
scrib-PI 1711 CG43398-PI 134..348 28..244 217 30.4 Plus
scrib-PC 1247 CG43398-PC 156..433 27..300 210 27.5 Plus
scrib-PI 1711 CG43398-PI 156..433 27..300 210 27.5 Plus
scrib-PC 1247 CG43398-PC 25..210 58..244 197 29.8 Plus
scrib-PC 1247 CG43398-PC 216..384 18..192 197 32 Plus
scrib-PI 1711 CG43398-PI 25..210 58..244 197 29.8 Plus
scrib-PI 1711 CG43398-PI 216..384 18..192 197 32 Plus