Clone Sequence Records
BS05892.3prime Sequence
934 bp (851 high quality bases) assembled on 2005-12-03
> BS05892.3prime
ATGGTCTAGAAAGCTTTCAAAAGGTGGTGACAAAGCGCGACATTTCCGGC
AGCATGACACTCAGATCCTCGATGTTGTTCTCCAGCGCACTCTCGTCCGT
TGTGTCCAGTTCGCTGGTCCGCACGCTGTTCGCCCAGTCGGAGGAGTCTA
GATCCTGTCCTGCTCCTCGCGCCTGATCCTCCTGCTGTTCCTGGGCGTTG
AGGCTAGCTCGACTGGCGAGACCATCGCAAATATTGGCGGGATCTGACGG
CAGCTCCACATAAAGGTTCGTCTGGCGCAAAGCCATTAGCTGTAGATCGC
GGTGCAGGCTGATGGGATTCTTGGACAGGTTGAGCATGTGAAGAGTCCGC
AACTCCTCCAGTTGTGACCGCGTGGGCATCTCGTCAATACAATTTTCGTT
GAGAAAAGCAAACCGCAGCTTCTGCATGGCCATCAGCATCCTGGGCAGCC
GTCGCAATCGATTCCCCTTAAGATTCAGATGCACCAAATTTCCCAGCAAC
GCCATGGTCAGTGGCACTTCGCTGAGTTCGCAGCCCTCGGCTGTTAGCCA
ACGCAGGGAGGACAGAGCGCCTATGGCATCGGGCAACTTCTTCAAGGGAT
TTCCCCGTACGCCCAGCGTCTCGAGGTGTTCACAGTTACGAATTTCGTTG
GGCAGCTCCAGGAGCCCAGTATTATTGCACCAGAACGTCTCCAGCTGAGT
GAGGTATCCCAGTTCGGGTGGCAAACTACTAATGTTATTGCAGCTGATGT
TGAGAAACTTCAGCCGGACCAAACGACAGATGCAGAGCGGGAATTCGTCC
AGTTTATTGTAGTCCAACGTGAGGACCTGAAGTCGCATCAAACTACCAAT
GGAGGATGGGATCTTTTGTAGCTTGTTTTGGTTGAGGAACAGCTTCATCA
GCGTCTCGCACTTCTCTATGATGCCCGGAACGTC
BS05892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-PA | 1026 | CG10307-RA | 109..1026 | 934..17 | 4515 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1177 | CG10307-RB | 194..1112 | 934..16 | 4550 | 99.7 | Minus |
CG10307-RA | 1362 | CG10307-RA | 379..1297 | 934..16 | 4550 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21689282..21689868 | 864..278 | 2920 | 99.8 | Minus |
2R | 25286936 | 2R | 21689926..21690188 | 278..16 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 21689151..21689216 | 934..869 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:24:31 has no hits.
BS05892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:31 Download gff for
BS05892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 109..1026 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:07 Download gff for
BS05892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 109..1026 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:12 Download gff for
BS05892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 240..1164 | 10..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:41 Download gff for
BS05892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 379..1303 | 10..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:41 Download gff for
BS05892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21689151..21689222 | 863..934 | 97 | -> | Minus |
2R | 21689284..21689868 | 278..862 | 99 | -> | Minus |
2R | 21689927..21690194 | 10..277 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:12 Download gff for
BS05892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17576656..17576727 | 863..934 | 97 | -> | Minus |
arm_2R | 17576789..17577373 | 278..862 | 99 | -> | Minus |
arm_2R | 17577432..17577699 | 10..277 | 99 | | Minus |
BS05892.5prime Sequence
891 bp (812 high quality bases) assembled on 2005-12-03
> BS05892.5prime
GAAGTTATCAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACT
ACGTGCTGGCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTG
AATCTGTCCCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTG
CGAGACGCTGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTC
CATCCTCCATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTAC
AATAAACTGGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAA
GTTTCTCAACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGG
GATACCTCACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTG
GAGCTGCCCAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGT
ACGGGGAAATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCT
CCCTGCGTTGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTG
ACCATGGCGTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCG
ATTGCGACGGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTG
CTTTTCTCAACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTG
GAGGAGTTGCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAG
CCTGCACCGCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATG
TGGAGCTGCCGTCAGATCCCGCCAAATATTGCGATGGTCTCGCCAGTCGA
GCTAGCCTCAACGCCCAGGAACAGCAGGAGGATCANGCGCG
BS05892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-PA | 1026 | CG10307-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
CG10307-PA | 1026 | CG10307-RA | 813..875 | 829..891 | 296 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1177 | CG10307-RB | 82..960 | 13..891 | 4339 | 99.7 | Plus |
CG10307-RA | 1362 | CG10307-RA | 267..1145 | 13..891 | 4339 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21689282..21689868 | 195..781 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 21689039..21689222 | 13..196 | 920 | 100 | Plus |
2R | 25286936 | 2R | 21689926..21690036 | 781..891 | 499 | 96.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:20:36 has no hits.
BS05892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:32 Download gff for
BS05892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:08 Download gff for
BS05892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:01 Download gff for
BS05892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 121..1006 | 7..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:00 Download gff for
BS05892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 260..1145 | 7..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:00 Download gff for
BS05892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21689032..21689222 | 7..196 | 98 | -> | Plus |
2R | 21689284..21689868 | 197..781 | 100 | -> | Plus |
2R | 21689927..21690036 | 782..891 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:01 Download gff for
BS05892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17576537..17576727 | 7..196 | 98 | -> | Plus |
arm_2R | 17576789..17577373 | 197..781 | 100 | -> | Plus |
arm_2R | 17577432..17577541 | 782..891 | 97 | | Plus |
BS05892.complete Sequence
1058 bp (1058 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635287
> BS05892.complete
GAAGTTATCAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACT
ACGTGCTGGCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTG
AATCTGTCCCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTG
CGAGACGCTGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTC
CATCCTCCATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTAC
AATAAACTGGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAA
GTTTCTCAACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGG
GATACCTCACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTG
GAGCTGCCCAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGT
ACGGGGAAATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCT
CCCTGCGTTGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTG
ACCATGGCGTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCG
ATTGCGACGGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTG
CTTTTCTCAACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTG
GAGGAGTTGCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAG
CCTGCACCGCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATG
TGGAGCTGCCGTCAGATCCCGCCAATATTTGCGATGGTCTCGCCAGTCGA
GCTAGCCTCAACGCCCAGGAACAGCAGGAGGATCAGGCGCGAGGAGCAGG
ACAGGATCTAGACTCCTCCGACTGGGCGAACAGCGTGCGGACCAGCGAAC
TGGACACAACGGACGAGAGTGCGCTGGAGAACAACATCGAGGATCTGAGT
GTCATGCTGCCGGAAATGTCGCGCTTTGTCACCACCTTTTGAAAGCTTTC
TAGACCAT
BS05892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1026 | CG10307-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG10307-RA | 1026 | CG10307-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1177 | CG10307-RB | 82..1112 | 13..1043 | 5155 | 100 | Plus |
CG10307-RA | 1362 | CG10307-RA | 267..1297 | 13..1043 | 5155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21689282..21689868 | 195..781 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 21689926..21690188 | 781..1043 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 21689039..21689222 | 13..196 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:09 has no hits.
BS05892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:09 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:26 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 121..1164 | 7..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:37:22 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 132..1156 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:09 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 121..1164 | 7..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:16 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 271..1295 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:16 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21689043..21689222 | 17..196 | 100 | -> | Plus |
2R | 21689284..21689868 | 197..781 | 100 | -> | Plus |
2R | 21689927..21690186 | 782..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:37:22 Download gff for
BS05892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17576548..17576727 | 17..196 | 100 | -> | Plus |
arm_2R | 17576789..17577373 | 197..781 | 100 | -> | Plus |
arm_2R | 17577432..17577691 | 782..1041 | 100 | | Plus |
BS05892.pep Sequence
Translation from 16 to 1041
> BS05892.pep
MEKVCQFFRNNYVLANCEDAIYKKAFSLNLSHYQISDVPGIIEKCETLMK
LFLNQNKLTKIPSSIGSLMRLQVLTLDYNKLDEFPLCICRLVRLKFLNIS
CNNISSLPPELGYLTQLETFWCNNTGLLELPNEIRNCEHLETLGVRGNPL
KKLPDAIGALSSLRWLTAEGCELSEVPLTMALLGNLVHLNLKGNRLRRLP
RMLMAMQKLRFAFLNENCIDEMPTRSQLEELRTLHMLNLSKNPISLHRDL
QLMALRQTNLYVELPSDPANICDGLASRASLNAQEQQEDQARGAGQDLDS
SDWANSVRTSELDTTDESALENNIEDLSVMLPEMSRFVTTF*
BS05892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-PB | 341 | CG10307-PB | 1..341 | 1..341 | 1762 | 100 | Plus |
CG10307-PA | 341 | CG10307-PA | 1..341 | 1..341 | 1762 | 100 | Plus |
scrib-PC | 1247 | CG43398-PC | 112..357 | 29..270 | 263 | 32.5 | Plus |
scrib-PI | 1711 | CG43398-PI | 112..357 | 29..270 | 263 | 32.5 | Plus |
scrib-PP | 1729 | CG43398-PP | 112..357 | 29..270 | 263 | 32.5 | Plus |
scrib-PC | 1247 | CG43398-PC | 65..284 | 28..249 | 234 | 28.8 | Plus |
scrib-PI | 1711 | CG43398-PI | 65..284 | 28..249 | 234 | 28.8 | Plus |
scrib-PC | 1247 | CG43398-PC | 42..254 | 28..242 | 226 | 30.7 | Plus |
scrib-PI | 1711 | CG43398-PI | 42..254 | 28..242 | 226 | 30.7 | Plus |
scrib-PC | 1247 | CG43398-PC | 180..352 | 28..200 | 221 | 31.2 | Plus |
scrib-PI | 1711 | CG43398-PI | 180..352 | 28..200 | 221 | 31.2 | Plus |
scrib-PC | 1247 | CG43398-PC | 134..348 | 28..244 | 217 | 30.4 | Plus |
scrib-PI | 1711 | CG43398-PI | 134..348 | 28..244 | 217 | 30.4 | Plus |
scrib-PC | 1247 | CG43398-PC | 156..433 | 27..300 | 210 | 27.5 | Plus |
scrib-PI | 1711 | CG43398-PI | 156..433 | 27..300 | 210 | 27.5 | Plus |
scrib-PC | 1247 | CG43398-PC | 25..210 | 58..244 | 197 | 29.8 | Plus |
scrib-PC | 1247 | CG43398-PC | 216..384 | 18..192 | 197 | 32 | Plus |
scrib-PI | 1711 | CG43398-PI | 25..210 | 58..244 | 197 | 29.8 | Plus |
scrib-PI | 1711 | CG43398-PI | 216..384 | 18..192 | 197 | 32 | Plus |