Clone BS05893 Report

Search the DGRC for BS05893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG3663-RA
Protein status:BS05893.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05893.3prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-03

> BS05893.3prime
ATGGTCTAGAAAGCTTTCACAGCTTGGCACTGCCCGCTGGCACTCCGCTC
CCGTTGCGCGTGAGTTCCATATCCACCGACGGCTGGTTCACCAATTTCCG
GACCACATCGAACTTGGGGTTGTTCTTATCTCGAACCAAGTCGAAGATAA
CGCTCTCACTAGTGGTGATCACACAGCCCGCTTGACGCAGGCGATCCAGG
GCTAGATCTCGATCCTGGTTCAGCCTGGAGGAGCAGCAGTCCGCCACTAT
GTATACGTTGATGTTTTGCTCGAGGAGATCGATGGCGGTCTGCTCCACGC
AAATGTGGGACTCGAGGCCATATAGCACGACATCCTCTGGCTTGTCATTG
AAGATATCCTTGATCACAGCCTTGACTTCGGGAGTAAACATGCTGAAAAG
GGTTTTACCGGAGACCAGCTTCGCATGGCTTACATCCAGTTGGGCCACTG
TTTTTCCTAGTTTTTCCGGATAGTGTTCGGTTACAATCAGAGGAACATCT
AAAGCCTTTCCCGCCCGAGTTAGTTTGTCGACGTTTTTGATCATGTTATC
AAAGAGCGGCATGGCCGGTCGGAACTTTTCTTGAATGTCGCACAACAGGA
AAAGCGTTTTCTTCGGGTTCAAGTGACAGCGTCGCAGGGCCATGTCGACT
GATAACT

BS05893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-PA 627 CG3663-RA 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 780 CG3663-RA 93..719 643..17 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662053..24662348 312..17 1480 100 Minus
2R 25286936 2R 24661788..24661997 520..311 1050 100 Minus
2R 25286936 2R 24661595..24661717 643..521 615 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:59:10 has no hits.

BS05893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:33 Download gff for BS05893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:09 Download gff for BS05893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:18:06 Download gff for BS05893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..719 17..643 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:46 Download gff for BS05893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..719 17..643 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:46 Download gff for BS05893.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24661595..24661717 521..643 100 -> Minus
2R 24661788..24661997 311..520 100 -> Minus
2R 24662055..24662348 17..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:18:06 Download gff for BS05893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20549311..20549520 311..520 100 -> Minus
arm_2R 20549118..20549240 521..643 100 -> Minus
arm_2R 20549578..20549871 17..310 100   Minus

BS05893.5prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-03

> BS05893.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGTGAAAGCTTT
CTAGACC

BS05893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-PA 627 CG3663-RA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 780 CG3663-RA 93..719 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662053..24662348 348..643 1480 100 Plus
2R 25286936 2R 24661788..24661997 140..349 1050 100 Plus
2R 25286936 2R 24661595..24661717 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:34:01 has no hits.

BS05893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:34 Download gff for BS05893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:11 Download gff for BS05893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:09 Download gff for BS05893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..719 17..643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:08 Download gff for BS05893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..719 17..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:08 Download gff for BS05893.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24661595..24661717 17..139 100 -> Plus
2R 24661788..24661997 140..349 100 -> Plus
2R 24662055..24662348 350..643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:09 Download gff for BS05893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20549118..20549240 17..139 100 -> Plus
arm_2R 20549311..20549520 140..349 100 -> Plus
arm_2R 20549578..20549871 350..643 100   Plus

BS05893.complete Sequence

659 bp (659 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635288

> BS05893.complete
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGTGAAAGCTTT
CTAGACCAT

BS05893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 627 CG3663-PA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 780 CG3663-RA 93..719 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662053..24662348 348..643 1480 100 Plus
2R 25286936 2R 24661788..24661997 140..349 1050 100 Plus
2R 25286936 2R 24661595..24661717 17..139 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:14:08 has no hits.

BS05893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:10 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:27 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 72..698 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:14 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..718 17..642 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:10 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 72..698 17..643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:02 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..718 17..642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:02 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24661595..24661717 17..139 100 -> Plus
2R 24661788..24661997 140..349 100 -> Plus
2R 24662055..24662347 350..642 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:14 Download gff for BS05893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20549118..20549240 17..139 100 -> Plus
arm_2R 20549311..20549520 140..349 100 -> Plus
arm_2R 20549578..20549870 350..642 100   Plus

BS05893.pep Sequence

Translation from 16 to 642

> BS05893.pep
MALRRCHLNPKKTLFLLCDIQEKFRPAMPLFDNMIKNVDKLTRAGKALDV
PLIVTEHYPEKLGKTVAQLDVSHAKLVSGKTLFSMFTPEVKAVIKDIFND
KPEDVVLYGLESHICVEQTAIDLLEQNINVYIVADCCSSRLNQDRDLALD
RLRQAGCVITTSESVIFDLVRDKNNPKFDVVRKLVNQPSVDMELTRNGSG
VPAGSAKL*

BS05893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-PA 208 CG3663-PA 1..208 1..208 1065 100 Plus
CG11333-PA 204 CG11333-PA 12..200 8..196 583 58.7 Plus