Clone Sequence Records
BS05893.3prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-03
> BS05893.3prime
ATGGTCTAGAAAGCTTTCACAGCTTGGCACTGCCCGCTGGCACTCCGCTC
CCGTTGCGCGTGAGTTCCATATCCACCGACGGCTGGTTCACCAATTTCCG
GACCACATCGAACTTGGGGTTGTTCTTATCTCGAACCAAGTCGAAGATAA
CGCTCTCACTAGTGGTGATCACACAGCCCGCTTGACGCAGGCGATCCAGG
GCTAGATCTCGATCCTGGTTCAGCCTGGAGGAGCAGCAGTCCGCCACTAT
GTATACGTTGATGTTTTGCTCGAGGAGATCGATGGCGGTCTGCTCCACGC
AAATGTGGGACTCGAGGCCATATAGCACGACATCCTCTGGCTTGTCATTG
AAGATATCCTTGATCACAGCCTTGACTTCGGGAGTAAACATGCTGAAAAG
GGTTTTACCGGAGACCAGCTTCGCATGGCTTACATCCAGTTGGGCCACTG
TTTTTCCTAGTTTTTCCGGATAGTGTTCGGTTACAATCAGAGGAACATCT
AAAGCCTTTCCCGCCCGAGTTAGTTTGTCGACGTTTTTGATCATGTTATC
AAAGAGCGGCATGGCCGGTCGGAACTTTTCTTGAATGTCGCACAACAGGA
AAAGCGTTTTCTTCGGGTTCAAGTGACAGCGTCGCAGGGCCATGTCGACT
GATAACT
BS05893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-PA | 627 | CG3663-RA | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 780 | CG3663-RA | 93..719 | 643..17 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662053..24662348 | 312..17 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 24661788..24661997 | 520..311 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 24661595..24661717 | 643..521 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:59:10 has no hits.
BS05893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:33 Download gff for
BS05893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:09 Download gff for
BS05893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:18:06 Download gff for
BS05893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..719 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:46 Download gff for
BS05893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..719 | 17..643 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:46 Download gff for
BS05893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24661595..24661717 | 521..643 | 100 | -> | Minus |
2R | 24661788..24661997 | 311..520 | 100 | -> | Minus |
2R | 24662055..24662348 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:18:06 Download gff for
BS05893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20549311..20549520 | 311..520 | 100 | -> | Minus |
arm_2R | 20549118..20549240 | 521..643 | 100 | -> | Minus |
arm_2R | 20549578..20549871 | 17..310 | 100 | | Minus |
BS05893.5prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-03
> BS05893.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGTGAAAGCTTT
CTAGACC
BS05893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-PA | 627 | CG3663-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 780 | CG3663-RA | 93..719 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662053..24662348 | 348..643 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 24661788..24661997 | 140..349 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 24661595..24661717 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:34:01 has no hits.
BS05893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:34 Download gff for
BS05893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:11 Download gff for
BS05893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:09 Download gff for
BS05893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..719 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:08 Download gff for
BS05893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..719 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:08 Download gff for
BS05893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24661595..24661717 | 17..139 | 100 | -> | Plus |
2R | 24661788..24661997 | 140..349 | 100 | -> | Plus |
2R | 24662055..24662348 | 350..643 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:09 Download gff for
BS05893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20549118..20549240 | 17..139 | 100 | -> | Plus |
arm_2R | 20549311..20549520 | 140..349 | 100 | -> | Plus |
arm_2R | 20549578..20549871 | 350..643 | 100 | | Plus |
BS05893.complete Sequence
659 bp (659 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635288
> BS05893.complete
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGTGAAAGCTTT
CTAGACCAT
BS05893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 627 | CG3663-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 780 | CG3663-RA | 93..719 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662053..24662348 | 348..643 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 24661788..24661997 | 140..349 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 24661595..24661717 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:14:08 has no hits.
BS05893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:10 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:27 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 72..698 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:14 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..718 | 17..642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:10 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 72..698 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:02 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..718 | 17..642 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:02 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24661595..24661717 | 17..139 | 100 | -> | Plus |
2R | 24661788..24661997 | 140..349 | 100 | -> | Plus |
2R | 24662055..24662347 | 350..642 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:14 Download gff for
BS05893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20549118..20549240 | 17..139 | 100 | -> | Plus |
arm_2R | 20549311..20549520 | 140..349 | 100 | -> | Plus |
arm_2R | 20549578..20549870 | 350..642 | 100 | | Plus |
BS05893.pep Sequence
Translation from 16 to 642
> BS05893.pep
MALRRCHLNPKKTLFLLCDIQEKFRPAMPLFDNMIKNVDKLTRAGKALDV
PLIVTEHYPEKLGKTVAQLDVSHAKLVSGKTLFSMFTPEVKAVIKDIFND
KPEDVVLYGLESHICVEQTAIDLLEQNINVYIVADCCSSRLNQDRDLALD
RLRQAGCVITTSESVIFDLVRDKNNPKFDVVRKLVNQPSVDMELTRNGSG
VPAGSAKL*
BS05893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-PA | 208 | CG3663-PA | 1..208 | 1..208 | 1065 | 100 | Plus |
CG11333-PA | 204 | CG11333-PA | 12..200 | 8..196 | 583 | 58.7 | Plus |