Clone BS05895 Report

Search the DGRC for BS05895

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG3397-RA
Protein status:BS05895.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05895.3prime Sequence

895 bp (838 high quality bases) assembled on 2005-12-03

> BS05895.3prime
ATGGTCTAGAAAGCTTTCATTTGAACATGTTAACCGTGGATAAAGTGGAG
CCCCAACTGTAGGACTTGGTAAAAACGTTTTCGCGCAGATACTGCAGCAC
TTCCTGTTCGTGGGAAGTGAGACCGTCGAAGATCGCGTCCAAGTTAATCC
GCAGCAGCTTTCGGTTGGGGATACCGATGAGGAAGGTGGCCGCCCCATCC
AGTTGCATTGTATAGTACATGGCCAGCTTTCCAAGCTCAACGTTCCTCTT
CTGACAGATTTCGGCTCCCCGTTTGCCCACAGCTAGGAGTTCCGGACTAC
CAGGATGCCAGGACTGGGGTCCAGCGTTGCTTAGGAGTCCCAGAGAGTGC
GCGGCCGCACAGACAACGCCCACGCCCATCTCCTGGAAGGCCTTCATGTG
GCGCAGCAAAGTGTTGTCCAACAGGGTGTAGCGGGCATAGTTGAGCACCA
CCTGGATGCGACCTTTGCCCCGCTCGGCACACTCCTTCAGCACGTCCACA
TCGTAGGCGGTGACTCCGATGAATCGAGCCTTTCCCGCCTGGACGTACTC
CTCGAGGACGGGTATGGTCTCATTCAGCACCATGTCCAGACTAGGTGCCG
CATCCACGTCATGAACCTGTAGTACGTCCACCCTGTCCAACTGGAGCAGC
TCCAGACTACGCTTCACACTCTCCCGAGCCTTGGCAGCCGTATAGTCGAA
CATATTGTTTGGATCCAACTCGTAACGTGCAACTTTAGTTGCTATATAAT
AGGCCTCCCGGGGCACATCCTTGAGCGCCTGGCCAAGCAGCTCTTCCGAT
TTGCCTTGGCCATAAAAGGGAGCCGTGTCTATGTAGTTGATACCGGATCT
AATGGCTTCCTGCACCGTGAGGATGCCCTCCTCGCGATCGAAGTC

BS05895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 1029 CG3397-RA 151..1029 895..17 4395 100 Minus
CG12224-PA 885 CG12224-RA 242..641 717..318 1200 92 Minus
CG12224-PA 885 CG12224-RA 651..881 308..78 780 93.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1187 CG3397-RA 184..1062 895..17 4395 100 Minus
CG12224-RC 1628 CG12224-RC 679..1538 889..17 2945 89.2 Minus
CG12224-RB 1109 CG12224-RB 160..1019 889..17 2945 89.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983486..11984028 78..620 2715 100 Plus
3R 32079331 3R 11981012..11981554 78..620 2070 92.1 Plus
3R 32079331 3R 11984078..11984358 615..895 1405 100 Plus
3R 32079331 3R 11981604..11981865 615..889 680 84 Plus
3R 32079331 3R 11983223..11983283 17..77 305 100 Plus
3R 32079331 3R 11980794..11980854 17..77 200 88.5 Plus
Blast to na_te.dros performed on 2015-02-11 17:27:19 has no hits.

BS05895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:35 Download gff for BS05895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 151..1029 17..895 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:12 Download gff for BS05895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 151..1029 17..895 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:00 Download gff for BS05895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 184..1064 13..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:03 Download gff for BS05895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 184..1064 13..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:03 Download gff for BS05895.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11983221..11983283 13..77 96 <- Plus
3R 11983486..11984024 78..616 100 <- Plus
3R 11984080..11984358 617..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:00 Download gff for BS05895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7808943..7809005 13..77 96 <- Plus
arm_3R 7809208..7809746 78..616 100 <- Plus
arm_3R 7809802..7810080 617..895 100   Plus

BS05895.5prime Sequence

910 bp (797 high quality bases) assembled on 2005-12-03

> BS05895.5prime
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTG

BS05895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 1029 CG3397-RA 1..894 17..910 4470 100 Plus
CG12224-PA 885 CG12224-RA 242..641 345..744 1200 92 Plus
CG12224-PA 885 CG12224-RA 1..97 17..113 485 100 Plus
CG12224-PA 885 CG12224-RA 651..807 754..910 460 91.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1187 CG3397-RA 34..927 17..910 4470 100 Plus
CG12224-RC 1628 CG12224-RC 523..1403 17..910 2900 88.4 Plus
CG12224-RB 1109 CG12224-RB 4..884 17..910 2900 88.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983560..11984028 910..442 2345 100 Minus
3R 32079331 3R 11984078..11984508 447..17 2155 100 Minus
3R 32079331 3R 11981086..11981554 910..442 1730 91.3 Minus
3R 32079331 3R 11981604..11982021 447..17 1175 85.4 Minus
Blast to na_te.dros performed on 2015-02-12 13:16:35 has no hits.

BS05895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:36 Download gff for BS05895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:13 Download gff for BS05895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:07 Download gff for BS05895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..927 10..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:46 Download gff for BS05895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..927 10..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:46 Download gff for BS05895.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11983560..11984024 446..910 100 <- Minus
3R 11984080..11984511 10..445 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:07 Download gff for BS05895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7809282..7809746 446..910 100 <- Minus
arm_3R 7809802..7810233 10..445 99   Minus

BS05895.complete Sequence

1061 bp (1061 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635289

> BS05895.complete
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTGCGGATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCC
ACGAACAGGAAGTGCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCC
TACAGTTGGGGCTCCACTTTATCCACGGTTAACATGTTCAAATGAAAGCT
TTCTAGACCAT

BS05895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1029 CG3397-PA 1..1029 17..1045 5145 100 Plus
CG12224-RC 687 CG12224-PC 1..687 359..1045 2580 91.7 Plus
CG12224-RB 687 CG12224-PB 1..687 359..1045 2580 91.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1187 CG3397-RA 34..1062 17..1045 5145 100 Plus
CG12224-RC 1628 CG12224-RC 523..1538 17..1045 3415 89 Plus
CG12224-RB 1109 CG12224-RB 4..1019 17..1045 3415 89 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983486..11984028 984..442 2715 100 Minus
3R 32079331 3R 11984078..11984508 447..17 2155 100 Minus
3R 32079331 3R 11981012..11981554 984..442 2070 92.1 Minus
3R 32079331 3R 11981604..11982021 447..17 1175 85.4 Minus
3R 32079331 3R 11983223..11983283 1045..985 305 100 Minus
3R 32079331 3R 11980794..11980854 1045..985 200 88.5 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:24 has no hits.

BS05895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:53 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 17..1045 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:06 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1064 10..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:16 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 34..1061 17..1044 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:53 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1064 10..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:14 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 34..1061 17..1044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:14 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11983224..11983283 985..1044 100 <- Minus
3R 11983486..11984024 446..984 100 <- Minus
3R 11984080..11984508 17..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:16 Download gff for BS05895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7808946..7809005 985..1044 100 <- Minus
arm_3R 7809208..7809746 446..984 100 <- Minus
arm_3R 7809802..7810230 17..445 100   Minus

BS05895.pep Sequence

Translation from 16 to 1044

> BS05895.pep
MSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFSD
DFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAYY
IATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDAA
PSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVV
LNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPGS
PELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRI
NLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFK*

BS05895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 342 CG3397-PA 1..342 1..342 1740 100 Plus
CG18547-PA 345 CG18547-PA 1..330 1..331 1083 63.3 Plus
CG12224-PC 228 CG12224-PC 1..228 115..342 1055 90.8 Plus
CG12224-PB 228 CG12224-PB 1..228 115..342 1055 90.8 Plus