Clone Sequence Records
BS05895.3prime Sequence
895 bp (838 high quality bases) assembled on 2005-12-03
> BS05895.3prime
ATGGTCTAGAAAGCTTTCATTTGAACATGTTAACCGTGGATAAAGTGGAG
CCCCAACTGTAGGACTTGGTAAAAACGTTTTCGCGCAGATACTGCAGCAC
TTCCTGTTCGTGGGAAGTGAGACCGTCGAAGATCGCGTCCAAGTTAATCC
GCAGCAGCTTTCGGTTGGGGATACCGATGAGGAAGGTGGCCGCCCCATCC
AGTTGCATTGTATAGTACATGGCCAGCTTTCCAAGCTCAACGTTCCTCTT
CTGACAGATTTCGGCTCCCCGTTTGCCCACAGCTAGGAGTTCCGGACTAC
CAGGATGCCAGGACTGGGGTCCAGCGTTGCTTAGGAGTCCCAGAGAGTGC
GCGGCCGCACAGACAACGCCCACGCCCATCTCCTGGAAGGCCTTCATGTG
GCGCAGCAAAGTGTTGTCCAACAGGGTGTAGCGGGCATAGTTGAGCACCA
CCTGGATGCGACCTTTGCCCCGCTCGGCACACTCCTTCAGCACGTCCACA
TCGTAGGCGGTGACTCCGATGAATCGAGCCTTTCCCGCCTGGACGTACTC
CTCGAGGACGGGTATGGTCTCATTCAGCACCATGTCCAGACTAGGTGCCG
CATCCACGTCATGAACCTGTAGTACGTCCACCCTGTCCAACTGGAGCAGC
TCCAGACTACGCTTCACACTCTCCCGAGCCTTGGCAGCCGTATAGTCGAA
CATATTGTTTGGATCCAACTCGTAACGTGCAACTTTAGTTGCTATATAAT
AGGCCTCCCGGGGCACATCCTTGAGCGCCTGGCCAAGCAGCTCTTCCGAT
TTGCCTTGGCCATAAAAGGGAGCCGTGTCTATGTAGTTGATACCGGATCT
AATGGCTTCCTGCACCGTGAGGATGCCCTCCTCGCGATCGAAGTC
BS05895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-PA | 1029 | CG3397-RA | 151..1029 | 895..17 | 4395 | 100 | Minus |
CG12224-PA | 885 | CG12224-RA | 242..641 | 717..318 | 1200 | 92 | Minus |
CG12224-PA | 885 | CG12224-RA | 651..881 | 308..78 | 780 | 93.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1187 | CG3397-RA | 184..1062 | 895..17 | 4395 | 100 | Minus |
CG12224-RC | 1628 | CG12224-RC | 679..1538 | 889..17 | 2945 | 89.2 | Minus |
CG12224-RB | 1109 | CG12224-RB | 160..1019 | 889..17 | 2945 | 89.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11983486..11984028 | 78..620 | 2715 | 100 | Plus |
3R | 32079331 | 3R | 11981012..11981554 | 78..620 | 2070 | 92.1 | Plus |
3R | 32079331 | 3R | 11984078..11984358 | 615..895 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 11981604..11981865 | 615..889 | 680 | 84 | Plus |
3R | 32079331 | 3R | 11983223..11983283 | 17..77 | 305 | 100 | Plus |
3R | 32079331 | 3R | 11980794..11980854 | 17..77 | 200 | 88.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:27:19 has no hits.
BS05895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:35 Download gff for
BS05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 151..1029 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:12 Download gff for
BS05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 151..1029 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:00 Download gff for
BS05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 184..1064 | 13..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:03 Download gff for
BS05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 184..1064 | 13..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:03 Download gff for
BS05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11983221..11983283 | 13..77 | 96 | <- | Plus |
3R | 11983486..11984024 | 78..616 | 100 | <- | Plus |
3R | 11984080..11984358 | 617..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:00 Download gff for
BS05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7808943..7809005 | 13..77 | 96 | <- | Plus |
arm_3R | 7809208..7809746 | 78..616 | 100 | <- | Plus |
arm_3R | 7809802..7810080 | 617..895 | 100 | | Plus |
BS05895.5prime Sequence
910 bp (797 high quality bases) assembled on 2005-12-03
> BS05895.5prime
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTG
BS05895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-PA | 1029 | CG3397-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
CG12224-PA | 885 | CG12224-RA | 242..641 | 345..744 | 1200 | 92 | Plus |
CG12224-PA | 885 | CG12224-RA | 1..97 | 17..113 | 485 | 100 | Plus |
CG12224-PA | 885 | CG12224-RA | 651..807 | 754..910 | 460 | 91.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1187 | CG3397-RA | 34..927 | 17..910 | 4470 | 100 | Plus |
CG12224-RC | 1628 | CG12224-RC | 523..1403 | 17..910 | 2900 | 88.4 | Plus |
CG12224-RB | 1109 | CG12224-RB | 4..884 | 17..910 | 2900 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11983560..11984028 | 910..442 | 2345 | 100 | Minus |
3R | 32079331 | 3R | 11984078..11984508 | 447..17 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 11981086..11981554 | 910..442 | 1730 | 91.3 | Minus |
3R | 32079331 | 3R | 11981604..11982021 | 447..17 | 1175 | 85.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:16:35 has no hits.
BS05895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:36 Download gff for
BS05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:13 Download gff for
BS05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:07 Download gff for
BS05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..927 | 10..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:46 Download gff for
BS05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..927 | 10..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:46 Download gff for
BS05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11983560..11984024 | 446..910 | 100 | <- | Minus |
3R | 11984080..11984511 | 10..445 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:07 Download gff for
BS05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7809282..7809746 | 446..910 | 100 | <- | Minus |
arm_3R | 7809802..7810233 | 10..445 | 99 | | Minus |
BS05895.complete Sequence
1061 bp (1061 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635289
> BS05895.complete
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTGCGGATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCC
ACGAACAGGAAGTGCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCC
TACAGTTGGGGCTCCACTTTATCCACGGTTAACATGTTCAAATGAAAGCT
TTCTAGACCAT
BS05895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1029 | CG3397-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG12224-RC | 687 | CG12224-PC | 1..687 | 359..1045 | 2580 | 91.7 | Plus |
CG12224-RB | 687 | CG12224-PB | 1..687 | 359..1045 | 2580 | 91.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1187 | CG3397-RA | 34..1062 | 17..1045 | 5145 | 100 | Plus |
CG12224-RC | 1628 | CG12224-RC | 523..1538 | 17..1045 | 3415 | 89 | Plus |
CG12224-RB | 1109 | CG12224-RB | 4..1019 | 17..1045 | 3415 | 89 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11983486..11984028 | 984..442 | 2715 | 100 | Minus |
3R | 32079331 | 3R | 11984078..11984508 | 447..17 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 11981012..11981554 | 984..442 | 2070 | 92.1 | Minus |
3R | 32079331 | 3R | 11981604..11982021 | 447..17 | 1175 | 85.4 | Minus |
3R | 32079331 | 3R | 11983223..11983283 | 1045..985 | 305 | 100 | Minus |
3R | 32079331 | 3R | 11980794..11980854 | 1045..985 | 200 | 88.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:24 has no hits.
BS05895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:53 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 1..1029 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:06 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..1064 | 10..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:16 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 34..1061 | 17..1044 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:53 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..1064 | 10..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:14 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 34..1061 | 17..1044 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:14 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11983224..11983283 | 985..1044 | 100 | <- | Minus |
3R | 11983486..11984024 | 446..984 | 100 | <- | Minus |
3R | 11984080..11984508 | 17..445 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:16 Download gff for
BS05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7808946..7809005 | 985..1044 | 100 | <- | Minus |
arm_3R | 7809208..7809746 | 446..984 | 100 | <- | Minus |
arm_3R | 7809802..7810230 | 17..445 | 100 | | Minus |
BS05895.pep Sequence
Translation from 16 to 1044
> BS05895.pep
MSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFSD
DFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAYY
IATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDAA
PSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVV
LNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPGS
PELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRI
NLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFK*
BS05895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-PA | 342 | CG3397-PA | 1..342 | 1..342 | 1740 | 100 | Plus |
CG18547-PA | 345 | CG18547-PA | 1..330 | 1..331 | 1083 | 63.3 | Plus |
CG12224-PC | 228 | CG12224-PC | 1..228 | 115..342 | 1055 | 90.8 | Plus |
CG12224-PB | 228 | CG12224-PB | 1..228 | 115..342 | 1055 | 90.8 | Plus |