Clone BS05901 Report

Search the DGRC for BS05901

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptnmd-RA
Protein status:BS05901.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05901.3prime Sequence

886 bp (819 high quality bases) assembled on 2005-12-03

> BS05901.3prime
ATGGTCTAGAAAGCTTTTAATCTAATTCGATTCTATTCTCTAAGAATAGG
CTGCTCGTGTGCATCTTTGATTCCTTAATTTTTAAGTGCGAGCCCAGCAA
ATCGTCCATGGTGATGCGGACGTTGTTGCGATCAAGCGCTGTAGCTGACG
GATCTCTGGACGTGATGAGCTGCCTCATTCGGTAAACTGAAGCATTCCGG
CACATTTCCCGCAGGTCTGAGCCCGAGAAGCCATTTGTGAGCTTGGACAA
GCGATTCAAGTCGACATCCTGACTTACTTCCTCCGATTGGAGGATCAGCT
TCAGGATGTCTTTTCGTTGGGTCTCCGAGGGCAGACCAATGTGGAATTGG
GCTGGCATGCGGCGCACAATGGCCTTGTCTAAATCCTGCGGCCTGTTCGT
GGCACCCATCACAATCACCGTCGAGTTGGCGTTCGTGCTGAGGCCATCCC
ACAGCATCATAAACTGGGTCTTCATCATGGCGGTAGCCTCGTGGTCGTTC
ATGTTTCGAGATCGCAAAAATGAGTCTATTTCGTCAATAAAAATAATGCA
TGGCTCGATTCGCGATGCAAGCGAGAAGACAGCAGAAGTCAATTTCTGGG
ATTCCCCGTACCACTTGTCGGTAAGAATGGCGACGTCCAAGTTGATAAAG
CGCATTCCCGCCTCTTTTGCCGTCGCCTTCGCTATCAGCGTCTTTCCACA
GCCCGGTGGTCCATGGAGCAGGACGCCTTTGGGCGCCTGCCACAGCTTCG
AATGCTTGAAGAGATCCTTGTGCTGGATTGGCAGCACCACCGATTCCCGG
AGCTCCTGAATGACTGAATCCAGACCGGCGATATCGGCCCCACTGACTGT
TATGTCGGCGGGAAACACAAGATGTGACGCAATCAT

BS05901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5395-PA 1110 nmd-RA 241..1110 886..17 4275 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1719 CG5395-RC 352..1221 886..17 4305 99.7 Minus
nmd-RB 1172 CG5395-RB 224..1093 886..17 4305 99.7 Minus
nmd-RA 1300 CG5395-RA 352..1221 886..17 4305 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10302671..10303540 17..886 4305 99.7 Plus
2L 23513712 2L 14766376..14766791 751..336 325 71.9 Minus
Blast to na_te.dros performed on 2015-02-02 18:19:13 has no hits.

BS05901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:37 Download gff for BS05901.3prime
Subject Subject Range Query Range Percent Splice Strand
nmd-PA 241..1110 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:15 Download gff for BS05901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5395-PA 241..1110 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:53 Download gff for BS05901.3prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 352..1224 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:09 Download gff for BS05901.3prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 352..1224 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:09 Download gff for BS05901.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10302668..10303540 12..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:53 Download gff for BS05901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10302668..10303540 12..886 99   Plus

BS05901.5prime Sequence

870 bp (753 high quality bases) assembled on 2005-12-03

> BS05901.5prime
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCAAGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCTCGGAGACCCAAGAAAAGACATCCTGAAGCTGATCC
TCCATCGGAGGAAGTAAGTC

BS05901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5395-PA 1110 nmd-RA 1..810 17..826 4025 99.8 Plus
CG5395-PA 1110 nmd-RA 812..839 827..854 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1719 CG5395-RC 110..967 15..870 4225 99.7 Plus
nmd-RA 1300 CG5395-RA 110..967 15..870 4225 99.7 Plus
nmd-RB 1172 CG5395-RB 164..839 197..870 3315 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10302925..10303600 870..197 3265 99.6 Minus
2L 23513712 2L 10303654..10303838 199..15 925 100 Minus
2L 23513712 2L 14766281..14766791 297..807 350 71.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:40:07 has no hits.

BS05901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:38 Download gff for BS05901.5prime
Subject Subject Range Query Range Percent Splice Strand
nmd-PA 1..856 17..870 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:16 Download gff for BS05901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5395-PA 1..856 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:39 Download gff for BS05901.5prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 105..967 9..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:47 Download gff for BS05901.5prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 105..967 9..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:47 Download gff for BS05901.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10302925..10303598 199..870 99 <- Minus
2L 10303655..10303843 9..198 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:39 Download gff for BS05901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10302925..10303598 199..870 99 <- Minus
arm_2L 10303655..10303843 9..198 98   Minus

BS05901.complete Sequence

1142 bp (1142 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638787

> BS05901.complete
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCAGGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAGCTGATC
CTCCAATCGGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTTGTCCAA
GCTCACAAATGGCTTCTCGGGCTCAGACCTGCGGGAAATGTGCCGGAATG
CTTCAGTTTACCGAATGAGGCAGCTCATCACGTCCAGAGATCCGTCAGCT
ACAGCGCTTGATCGCAACAACGTCCGCATCACCATGGACGATTTGCTGGG
CTCGCACTTAAAAATTAAGGAATCAAAGATGCACACGAGCAGCCTATTCT
TAGAGAATAGAATCGAATTAGATTAAAAGCTTTCTAGACCAT

BS05901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1110 CG5395-PC 1..1110 17..1126 5550 100 Plus
nmd-RA 1110 CG5395-PA 1..1110 17..1126 5550 100 Plus
nmd-RB 870 CG5395-PB 1..870 257..1126 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1719 CG5395-RC 110..1221 15..1126 5560 100 Plus
nmd-RA 1300 CG5395-RA 110..1221 15..1126 5560 100 Plus
nmd-RB 1172 CG5395-RB 164..1093 197..1126 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10302671..10303600 1126..197 4650 100 Minus
2L 23513712 2L 10303654..10303838 199..15 925 100 Minus
2L 23513712 2L 14766281..14766791 297..807 335 71 Plus
Blast to na_te.dros performed on 2014-11-26 22:09:09 has no hits.

BS05901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:54 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 1..1110 17..1126 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:08 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 103..1222 9..1131 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:31 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 112..1219 17..1124 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:54 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 103..1222 9..1131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:46 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 112..1219 17..1124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:46 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10303655..10303836 17..198 100   Minus
2L 10302673..10303598 199..1124 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:31 Download gff for BS05901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10303655..10303836 17..198 100   Minus
arm_2L 10302673..10303598 199..1124 100 <- Minus

BS05901.pep Sequence

Translation from 16 to 1125

> BS05901.pep
MDNFGLGGSDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKK
AKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIA
GLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK
ATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEI
DSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD
KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGF
SGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKI
KESKMHTSSLFLENRIELD*

BS05901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-PC 369 CG5395-PC 1..369 1..369 1869 100 Plus
nmd-PA 369 CG5395-PA 1..369 1..369 1869 100 Plus
nmd-PB 289 CG5395-PB 1..289 81..369 1466 100 Plus
CG4701-PA 384 CG4701-PA 10..384 15..369 1145 58.9 Plus
CG3326-PB 523 CG3326-PB 247..492 94..342 484 39.2 Plus