Clone Sequence Records
BS05901.3prime Sequence
886 bp (819 high quality bases) assembled on 2005-12-03
> BS05901.3prime
ATGGTCTAGAAAGCTTTTAATCTAATTCGATTCTATTCTCTAAGAATAGG
CTGCTCGTGTGCATCTTTGATTCCTTAATTTTTAAGTGCGAGCCCAGCAA
ATCGTCCATGGTGATGCGGACGTTGTTGCGATCAAGCGCTGTAGCTGACG
GATCTCTGGACGTGATGAGCTGCCTCATTCGGTAAACTGAAGCATTCCGG
CACATTTCCCGCAGGTCTGAGCCCGAGAAGCCATTTGTGAGCTTGGACAA
GCGATTCAAGTCGACATCCTGACTTACTTCCTCCGATTGGAGGATCAGCT
TCAGGATGTCTTTTCGTTGGGTCTCCGAGGGCAGACCAATGTGGAATTGG
GCTGGCATGCGGCGCACAATGGCCTTGTCTAAATCCTGCGGCCTGTTCGT
GGCACCCATCACAATCACCGTCGAGTTGGCGTTCGTGCTGAGGCCATCCC
ACAGCATCATAAACTGGGTCTTCATCATGGCGGTAGCCTCGTGGTCGTTC
ATGTTTCGAGATCGCAAAAATGAGTCTATTTCGTCAATAAAAATAATGCA
TGGCTCGATTCGCGATGCAAGCGAGAAGACAGCAGAAGTCAATTTCTGGG
ATTCCCCGTACCACTTGTCGGTAAGAATGGCGACGTCCAAGTTGATAAAG
CGCATTCCCGCCTCTTTTGCCGTCGCCTTCGCTATCAGCGTCTTTCCACA
GCCCGGTGGTCCATGGAGCAGGACGCCTTTGGGCGCCTGCCACAGCTTCG
AATGCTTGAAGAGATCCTTGTGCTGGATTGGCAGCACCACCGATTCCCGG
AGCTCCTGAATGACTGAATCCAGACCGGCGATATCGGCCCCACTGACTGT
TATGTCGGCGGGAAACACAAGATGTGACGCAATCAT
BS05901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5395-PA | 1110 | nmd-RA | 241..1110 | 886..17 | 4275 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1719 | CG5395-RC | 352..1221 | 886..17 | 4305 | 99.7 | Minus |
nmd-RB | 1172 | CG5395-RB | 224..1093 | 886..17 | 4305 | 99.7 | Minus |
nmd-RA | 1300 | CG5395-RA | 352..1221 | 886..17 | 4305 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10302671..10303540 | 17..886 | 4305 | 99.7 | Plus |
2L | 23513712 | 2L | 14766376..14766791 | 751..336 | 325 | 71.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:19:13 has no hits.
BS05901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:37 Download gff for
BS05901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-PA | 241..1110 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:15 Download gff for
BS05901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5395-PA | 241..1110 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:53 Download gff for
BS05901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 352..1224 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:09 Download gff for
BS05901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 352..1224 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:09 Download gff for
BS05901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10302668..10303540 | 12..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:53 Download gff for
BS05901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10302668..10303540 | 12..886 | 99 | | Plus |
BS05901.5prime Sequence
870 bp (753 high quality bases) assembled on 2005-12-03
> BS05901.5prime
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCAAGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCTCGGAGACCCAAGAAAAGACATCCTGAAGCTGATCC
TCCATCGGAGGAAGTAAGTC
BS05901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5395-PA | 1110 | nmd-RA | 1..810 | 17..826 | 4025 | 99.8 | Plus |
CG5395-PA | 1110 | nmd-RA | 812..839 | 827..854 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1719 | CG5395-RC | 110..967 | 15..870 | 4225 | 99.7 | Plus |
nmd-RA | 1300 | CG5395-RA | 110..967 | 15..870 | 4225 | 99.7 | Plus |
nmd-RB | 1172 | CG5395-RB | 164..839 | 197..870 | 3315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10302925..10303600 | 870..197 | 3265 | 99.6 | Minus |
2L | 23513712 | 2L | 10303654..10303838 | 199..15 | 925 | 100 | Minus |
2L | 23513712 | 2L | 14766281..14766791 | 297..807 | 350 | 71.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:40:07 has no hits.
BS05901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:38 Download gff for
BS05901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-PA | 1..856 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:16 Download gff for
BS05901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5395-PA | 1..856 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:39 Download gff for
BS05901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 105..967 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:47 Download gff for
BS05901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 105..967 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:47 Download gff for
BS05901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10302925..10303598 | 199..870 | 99 | <- | Minus |
2L | 10303655..10303843 | 9..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:39 Download gff for
BS05901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10302925..10303598 | 199..870 | 99 | <- | Minus |
arm_2L | 10303655..10303843 | 9..198 | 98 | | Minus |
BS05901.complete Sequence
1142 bp (1142 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638787
> BS05901.complete
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCAGGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAGCTGATC
CTCCAATCGGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTTGTCCAA
GCTCACAAATGGCTTCTCGGGCTCAGACCTGCGGGAAATGTGCCGGAATG
CTTCAGTTTACCGAATGAGGCAGCTCATCACGTCCAGAGATCCGTCAGCT
ACAGCGCTTGATCGCAACAACGTCCGCATCACCATGGACGATTTGCTGGG
CTCGCACTTAAAAATTAAGGAATCAAAGATGCACACGAGCAGCCTATTCT
TAGAGAATAGAATCGAATTAGATTAAAAGCTTTCTAGACCAT
BS05901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1110 | CG5395-PC | 1..1110 | 17..1126 | 5550 | 100 | Plus |
nmd-RA | 1110 | CG5395-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
nmd-RB | 870 | CG5395-PB | 1..870 | 257..1126 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1719 | CG5395-RC | 110..1221 | 15..1126 | 5560 | 100 | Plus |
nmd-RA | 1300 | CG5395-RA | 110..1221 | 15..1126 | 5560 | 100 | Plus |
nmd-RB | 1172 | CG5395-RB | 164..1093 | 197..1126 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10302671..10303600 | 1126..197 | 4650 | 100 | Minus |
2L | 23513712 | 2L | 10303654..10303838 | 199..15 | 925 | 100 | Minus |
2L | 23513712 | 2L | 14766281..14766791 | 297..807 | 335 | 71 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:09:09 has no hits.
BS05901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:54 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 1..1110 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:08 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 103..1222 | 9..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:31 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 112..1219 | 17..1124 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:54 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 103..1222 | 9..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:46 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 112..1219 | 17..1124 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:46 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10303655..10303836 | 17..198 | 100 | | Minus |
2L | 10302673..10303598 | 199..1124 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:31 Download gff for
BS05901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10303655..10303836 | 17..198 | 100 | | Minus |
arm_2L | 10302673..10303598 | 199..1124 | 100 | <- | Minus |
BS05901.pep Sequence
Translation from 16 to 1125
> BS05901.pep
MDNFGLGGSDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKK
AKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIA
GLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK
ATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEI
DSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD
KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGF
SGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKI
KESKMHTSSLFLENRIELD*
BS05901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-PC | 369 | CG5395-PC | 1..369 | 1..369 | 1869 | 100 | Plus |
nmd-PA | 369 | CG5395-PA | 1..369 | 1..369 | 1869 | 100 | Plus |
nmd-PB | 289 | CG5395-PB | 1..289 | 81..369 | 1466 | 100 | Plus |
CG4701-PA | 384 | CG4701-PA | 10..384 | 15..369 | 1145 | 58.9 | Plus |
CG3326-PB | 523 | CG3326-PB | 247..492 | 94..342 | 484 | 39.2 | Plus |