Clone BS05902 Report

Search the DGRC for BS05902

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptDer-1-RA
Protein status:BS05902.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05902.3prime Sequence

768 bp (767 high quality bases) assembled on 2005-12-03

> BS05902.3prime
ATGGTCTAGAAAGCTTTCAGTTGCGACCCAAGGTCATGCCCCGGCCCCAG
GGACTTTCGGTCGCCTGCCTAGGTGGTGCTCTGCTCTCCGGTGGGAGTCC
GAAGCCGCCGAATCCGCCGGAAACATCTGGCACCAGGCGCTTCAAGAACT
GCGGCGTTTCCAACAGGGGTGTGCCGCCCAAATCCTGCGAGTATTGGAAC
TTGAAGAAGTAGTACACATGTCCCACGAATATGCCCACCAGCGAGGCGAG
CGAGAAGTGGAAAATAAACTCGAAGGCGGCCAGCACCCAGGGAAGGTACA
TGGCCTTGAACCTGGTGCCGAACCAGAAGCTCACGGTGACGTCCTTGTTC
AGCTGGCACCAGATATACGTGATGGCCAGCACCAGCGTGTCCATGAGGAA
GTACACGTTGAAGATCATGCCCCCGATGTTGGCCAGCACCGCCGACACGA
TCAACAGGTACAGGTAATCAGCCGGACTTCGGCTGTACTGATCCTTCTCC
AGTTTGGAGCTGTACTGAACGATGAAGAAGCAGTTGATGAGGAAGTGGAA
GGCCGTGTTCGACGAGATGGGAAAGACGAACAGTGACGTCATGCAGCGCC
AGAGCTGCAGCTTGCTGAAAACGGCCGATCGGTCCAGATGCAGCCAATGA
AGGGGTATCACATCGAAGCGGCAGAGCATGCTCAACACCACGGTGGCCGT
CAGCCAGTAGCGGGTGAAGCGGGGCAGCGAGCGGTACCACACGCCAGCGT
CCATGTCGACTGATAACT

BS05902.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10908-PA 738 CG10908-RA 1..738 754..17 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 1243 CG10908-RB 280..1018 754..16 3695 100 Minus
Der-1-RA 1088 CG10908-RA 125..863 754..16 3695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1974561..1974818 512..255 1290 100 Minus
2L 23513712 2L 1974236..1974480 754..510 1225 100 Minus
2L 23513712 2L 1975061..1975188 143..16 640 100 Minus
2L 23513712 2L 1974881..1974992 254..143 560 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:17:52 has no hits.

BS05902.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:39 Download gff for BS05902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:17 Download gff for BS05902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:03 Download gff for BS05902.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 12..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:23 Download gff for BS05902.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 12..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:23 Download gff for BS05902.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1974230..1974480 510..762 98 -> Minus
2L 1974564..1974818 255..509 100 -> Minus
2L 1974881..1974991 144..254 100 -> Minus
2L 1975061..1975190 12..143 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:03 Download gff for BS05902.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1974230..1974480 510..762 98 -> Minus
arm_2L 1974564..1974818 255..509 100 -> Minus
arm_2L 1974881..1974991 144..254 100 -> Minus
arm_2L 1975061..1975190 12..143 98   Minus

BS05902.5prime Sequence

768 bp (710 high quality bases) assembled on 2005-12-03

> BS05902.5prime
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CTGAAAGCTTTCTAGACC

BS05902.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10908-PA 738 CG10908-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 1243 CG10908-RB 280..1018 17..755 3695 100 Plus
Der-1-RA 1088 CG10908-RA 125..863 17..755 3695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1974561..1974818 259..516 1290 100 Plus
2L 23513712 2L 1974236..1974480 17..261 1225 100 Plus
2L 23513712 2L 1975061..1975188 628..755 640 100 Plus
2L 23513712 2L 1974881..1974992 517..628 560 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:36:59 has no hits.

BS05902.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:40 Download gff for BS05902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:19 Download gff for BS05902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:22 Download gff for BS05902.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 9..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:15 Download gff for BS05902.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 9..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:15 Download gff for BS05902.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1975061..1975190 628..759 98   Plus
2L 1974230..1974480 9..261 98 -> Plus
2L 1974564..1974818 262..516 100 -> Plus
2L 1974881..1974991 517..627 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:22 Download gff for BS05902.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1974230..1974480 9..261 98 -> Plus
arm_2L 1974564..1974818 262..516 100 -> Plus
arm_2L 1974881..1974991 517..627 100 -> Plus
arm_2L 1975061..1975190 628..759 98   Plus

BS05902.complete Sequence

770 bp (770 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635290

> BS05902.complete
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CTGAAAGCTTTCTAGACCAT

BS05902.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 738 CG10908-PB 1..738 17..754 3690 100 Plus
Der-1-RA 738 CG10908-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 1243 CG10908-RB 280..1018 17..755 3695 100 Plus
Der-1-RA 1088 CG10908-RA 125..863 17..755 3695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1974561..1974818 259..516 1290 100 Plus
2L 23513712 2L 1974236..1974480 17..261 1225 100 Plus
2L 23513712 2L 1975061..1975188 628..755 640 100 Plus
2L 23513712 2L 1974881..1974992 517..628 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:00:19 has no hits.

BS05902.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:55 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
CG10908-RA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:09 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
CG10908-RA 86..832 9..759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:04 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 125..861 17..753 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:55 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
CG10908-RA 86..832 9..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:32 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 125..861 17..753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:32 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1974236..1974480 17..261 100 -> Plus
2L 1974564..1974818 262..516 100 -> Plus
2L 1974881..1974991 517..627 100 -> Plus
2L 1975061..1975186 628..753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:04 Download gff for BS05902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1974236..1974480 17..261 100 -> Plus
arm_2L 1974564..1974818 262..516 100 -> Plus
arm_2L 1974881..1974991 517..627 100 -> Plus
arm_2L 1975061..1975186 628..753 100   Plus

BS05902.pep Sequence

Translation from 16 to 753

> BS05902.pep
MDAGVWYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQ
LWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYL
LIVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFK
AMYLPWVLAAFEFIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLET
PQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPWGRGMTLGRN*

BS05902.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-PB 245 CG10908-PB 1..245 1..245 1316 100 Plus
Der-1-PA 245 CG10908-PA 1..245 1..245 1316 100 Plus
Der-2-PA 261 CG14899-PA 7..248 6..233 268 29.4 Plus