Clone Sequence Records
BS05902.3prime Sequence
768 bp (767 high quality bases) assembled on 2005-12-03
> BS05902.3prime
ATGGTCTAGAAAGCTTTCAGTTGCGACCCAAGGTCATGCCCCGGCCCCAG
GGACTTTCGGTCGCCTGCCTAGGTGGTGCTCTGCTCTCCGGTGGGAGTCC
GAAGCCGCCGAATCCGCCGGAAACATCTGGCACCAGGCGCTTCAAGAACT
GCGGCGTTTCCAACAGGGGTGTGCCGCCCAAATCCTGCGAGTATTGGAAC
TTGAAGAAGTAGTACACATGTCCCACGAATATGCCCACCAGCGAGGCGAG
CGAGAAGTGGAAAATAAACTCGAAGGCGGCCAGCACCCAGGGAAGGTACA
TGGCCTTGAACCTGGTGCCGAACCAGAAGCTCACGGTGACGTCCTTGTTC
AGCTGGCACCAGATATACGTGATGGCCAGCACCAGCGTGTCCATGAGGAA
GTACACGTTGAAGATCATGCCCCCGATGTTGGCCAGCACCGCCGACACGA
TCAACAGGTACAGGTAATCAGCCGGACTTCGGCTGTACTGATCCTTCTCC
AGTTTGGAGCTGTACTGAACGATGAAGAAGCAGTTGATGAGGAAGTGGAA
GGCCGTGTTCGACGAGATGGGAAAGACGAACAGTGACGTCATGCAGCGCC
AGAGCTGCAGCTTGCTGAAAACGGCCGATCGGTCCAGATGCAGCCAATGA
AGGGGTATCACATCGAAGCGGCAGAGCATGCTCAACACCACGGTGGCCGT
CAGCCAGTAGCGGGTGAAGCGGGGCAGCGAGCGGTACCACACGCCAGCGT
CCATGTCGACTGATAACT
BS05902.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10908-PA | 738 | CG10908-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 1243 | CG10908-RB | 280..1018 | 754..16 | 3695 | 100 | Minus |
Der-1-RA | 1088 | CG10908-RA | 125..863 | 754..16 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1974561..1974818 | 512..255 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 1974236..1974480 | 754..510 | 1225 | 100 | Minus |
2L | 23513712 | 2L | 1975061..1975188 | 143..16 | 640 | 100 | Minus |
2L | 23513712 | 2L | 1974881..1974992 | 254..143 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:17:52 has no hits.
BS05902.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:39 Download gff for
BS05902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:17 Download gff for
BS05902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:03 Download gff for
BS05902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 12..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:23 Download gff for
BS05902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 12..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:23 Download gff for
BS05902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1974230..1974480 | 510..762 | 98 | -> | Minus |
2L | 1974564..1974818 | 255..509 | 100 | -> | Minus |
2L | 1974881..1974991 | 144..254 | 100 | -> | Minus |
2L | 1975061..1975190 | 12..143 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:03 Download gff for
BS05902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1974230..1974480 | 510..762 | 98 | -> | Minus |
arm_2L | 1974564..1974818 | 255..509 | 100 | -> | Minus |
arm_2L | 1974881..1974991 | 144..254 | 100 | -> | Minus |
arm_2L | 1975061..1975190 | 12..143 | 98 | | Minus |
BS05902.5prime Sequence
768 bp (710 high quality bases) assembled on 2005-12-03
> BS05902.5prime
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CTGAAAGCTTTCTAGACC
BS05902.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10908-PA | 738 | CG10908-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 1243 | CG10908-RB | 280..1018 | 17..755 | 3695 | 100 | Plus |
Der-1-RA | 1088 | CG10908-RA | 125..863 | 17..755 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1974561..1974818 | 259..516 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 1974236..1974480 | 17..261 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 1975061..1975188 | 628..755 | 640 | 100 | Plus |
2L | 23513712 | 2L | 1974881..1974992 | 517..628 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:59 has no hits.
BS05902.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:40 Download gff for
BS05902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:19 Download gff for
BS05902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:22 Download gff for
BS05902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:15 Download gff for
BS05902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 9..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:15 Download gff for
BS05902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1975061..1975190 | 628..759 | 98 | | Plus |
2L | 1974230..1974480 | 9..261 | 98 | -> | Plus |
2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:22 Download gff for
BS05902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1974230..1974480 | 9..261 | 98 | -> | Plus |
arm_2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
arm_2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
arm_2L | 1975061..1975190 | 628..759 | 98 | | Plus |
BS05902.complete Sequence
770 bp (770 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635290
> BS05902.complete
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CTGAAAGCTTTCTAGACCAT
BS05902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 738 | CG10908-PB | 1..738 | 17..754 | 3690 | 100 | Plus |
Der-1-RA | 738 | CG10908-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 1243 | CG10908-RB | 280..1018 | 17..755 | 3695 | 100 | Plus |
Der-1-RA | 1088 | CG10908-RA | 125..863 | 17..755 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1974561..1974818 | 259..516 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 1974236..1974480 | 17..261 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 1975061..1975188 | 628..755 | 640 | 100 | Plus |
2L | 23513712 | 2L | 1974881..1974992 | 517..628 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:00:19 has no hits.
BS05902.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:55 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:09 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-RA | 86..832 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:04 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 125..861 | 17..753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:55 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-RA | 86..832 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:32 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 125..861 | 17..753 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:32 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1974236..1974480 | 17..261 | 100 | -> | Plus |
2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
2L | 1975061..1975186 | 628..753 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:04 Download gff for
BS05902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1974236..1974480 | 17..261 | 100 | -> | Plus |
arm_2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
arm_2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
arm_2L | 1975061..1975186 | 628..753 | 100 | | Plus |
BS05902.pep Sequence
Translation from 16 to 753
> BS05902.pep
MDAGVWYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQ
LWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYL
LIVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFK
AMYLPWVLAAFEFIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLET
PQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPWGRGMTLGRN*
BS05902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-PB | 245 | CG10908-PB | 1..245 | 1..245 | 1316 | 100 | Plus |
Der-1-PA | 245 | CG10908-PA | 1..245 | 1..245 | 1316 | 100 | Plus |
Der-2-PA | 261 | CG14899-PA | 7..248 | 6..233 | 268 | 29.4 | Plus |