Clone BS05903 Report

Search the DGRC for BS05903

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG6950-RA
Protein status:BS05903.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05903.3prime Sequence

830 bp (734 high quality bases) assembled on 2005-12-03

> BS05903.3prime
ATGGTCTAGAAAGCTTCTATTTCCATTTGGACAGCAGTTCGGCCGCCTTA
TCCAGGTTCTCTTGCTTCTTGATGAAGCAGTAGCGCACAAAGTCCTCCCC
CAGATGTTTGTTGGGTTCGCTGTAGAAGGCACTTGGCGGTATGCCCTGCA
AGCCCATGTTCTTGGTCATCCACTTGGTAAACTTGTAATCCCGATGCTTG
TCTGGCTCAGAGCTTAGATCAATCTTGCCCGCCAGTGGTGACCAGTCTGC
CAGCATAAAGTAGCCACCCTCAGGAATGGTGGGACGCATACCGGATTCGG
ACAGGAACTTGGCCATGAAGTCACGCTTCTGCTTCAGCTCGCGCGGCAGG
CTAAGGAAGTAGCTCTCCGGCTGACCCAAACGGGCCAGTTCTACCTCGAA
ACTGCGTGCGACGCCCTCCTGGAGCGGCGTTGGACAGGTGTACACAGAGT
TCTGATGCACCATCTGCAGGTTTCGAATCAGTTCAGCGGGTCCGTAGGCC
CAGCCTATTTTCCAACCAGTTACTGAGAAGGTCTTGCCCGCTGATCCCAG
AGTAATGGTGCGATCCCACATGCCCGGCAGCGTGCAGATACGGATGTGCT
CGGCTCCGTCGAACACCAACCACTCATACACCTCGTCCGAGACGCACAGC
ACATTCCACTTGCGGCAGAGCTCGGCTATCCTCTCTAGCTCTTTCCGGTT
GAAGACCTTTCCAATAGGGTTGTGGGGCGTGTTTAGGATAATCATCTTTG
TTTTAGAGTTGAACAGACTCTCGAACTCAGCGTCATCTAGCACCCAATCG
GCAGAGCTTATTGGTCCCTCTGTCTTGCGC

BS05903.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-PC 1353 CG6950-RC 540..1353 830..17 4070 100 Minus
CG6950-PA 1353 CG6950-RA 540..1353 830..17 4070 100 Minus
CG6950-PB 1353 CG6950-RB 540..1353 830..17 4070 100 Minus
CG6950-PD 1353 CG6950-RD 540..1353 830..17 4070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-RD 1430 CG6950-RD 590..1403 830..17 4070 100 Minus
CG6950-RB 1638 CG6950-RB 798..1611 830..17 4070 100 Minus
CG6950-RA 1665 CG6950-RA 825..1638 830..17 4070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11820408..11821221 17..830 4070 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:17:54 has no hits.

BS05903.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:41 Download gff for BS05903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-PB 540..1353 17..830 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:21 Download gff for BS05903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-PD 540..1353 17..830 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:05 Download gff for BS05903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 825..1642 13..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:25 Download gff for BS05903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 825..1642 13..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:25 Download gff for BS05903.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11820404..11821221 13..830 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:05 Download gff for BS05903.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7646126..7646943 13..830 99   Plus

BS05903.5prime Sequence

877 bp (689 high quality bases) assembled on 2005-12-03

> BS05903.5prime
GAAGTTATCAGTCGACATGCTACGCAGCTGTCAGTTAACCCTCTCCGCCG
CTAAGAGGAGCCTTCGCGAGCAGTTCCAGTTGCAAGCCCTTCGTCACCAG
CAGACTGCCATTAAAATGGAGAAATTCGATCTGCCCAAGCGATTGCAGGG
TAGCACGCCCAGCGTCTGGAACGAGTACATTGCCCTGGCCATGCAATATA
AGCCCCTGAACTTGGGACAGGGATTTCCCGATGATGCCGCTCCCGAGTAC
GTGACCCACTCGTTGGCCGACATTGCCAAGGAGCAGAATCCTCTTCTGCA
TCAGTACACTCGCGGTTACGGTCACGTTCGCCTGGTCAATGCGCTATCCA
AGCTCTATAGCGGTCTCGTCGGCAAGGAGCTAAATCCCCTCAGCGACATA
CTGATTACCTCAGGCGCCTATGAGGCTCTCTACTCCACCATCATGGGCCA
TGTGGACGTGGGCGACGAGGTGATCATTATTGAACCATTCTTTGATTGCT
ACGAGCCTATGGTCAAGATGGCCGGTGGAGTGCCCCGCTTTGTTCCCCTA
AAATTGCGCAAGACAGAGGGACCAATAAGCTCTGCCGATTGGGTGCTAGA
TGACGCTGAGTTCGAGAGTCTGTTCAACTCTAAAACAAAGATGATTATCC
TAAACACGCCCCACAACCCTATTGGAAAGGTCTTCAACCGGAAAGAGCTA
GAGAGGATAGCCGAGCTCTGCCGCAAGTGGAATGTGCTGTGCGTCTCGGA
CGAGGTGTATGAGTGGTTGGTGTTCGACGGAGCCGAGCACATCCGTATCT
GCACGCTGCCGGGCATGTGGGATCGCACCATTACTCTGGGATCAGCGGGG
CAGACCTTCTCAGTAACTGGGTGGAAA

BS05903.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-PC 1353 CG6950-RC 1..861 17..877 4230 99.6 Plus
CG6950-PA 1353 CG6950-RA 1..861 17..877 4230 99.6 Plus
CG6950-PB 1353 CG6950-RB 1..861 17..877 4230 99.6 Plus
CG6950-PD 1353 CG6950-RD 1..861 17..877 4230 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-RD 1430 CG6950-RD 51..911 17..877 4260 99.7 Plus
CG6950-RB 1638 CG6950-RB 259..1119 17..877 4260 99.7 Plus
CG6950-RA 1665 CG6950-RA 286..1146 17..877 4260 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11821280..11821819 556..17 2700 100 Minus
3R 32079331 3R 11820900..11821221 877..556 1565 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 10:50:18 has no hits.

BS05903.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:42 Download gff for BS05903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-PB 1..858 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:23 Download gff for BS05903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-PD 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:26:35 Download gff for BS05903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 278..1143 9..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:16 Download gff for BS05903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 278..1143 9..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:16 Download gff for BS05903.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11820903..11821220 557..874 99 <- Minus
3R 11821280..11821819 17..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:26:35 Download gff for BS05903.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7646625..7646942 557..874 99 <- Minus
arm_3R 7647002..7647541 17..556 100   Minus

BS05903.complete Sequence

1385 bp (1385 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635291

> BS05903.complete
GAAGTTATCAGTCGACATGCTACGCAGCTGTCAGTTAACCCTCTCCGCCG
CTAAGAGGAGCCTTCGCGAGCAGTTCCAGTTGCAAGCCCTTCGTCACCAG
CAGACTGCCATTAAAATGGAGAAATTCGATCTGCCCAAGCGATTGCAGGG
TAGCACGCCCAGCGTCTGGAACGAGTACATTGCCCTGGCCATGCAATATA
AGCCCCTGAACTTGGGACAGGGATTTCCCGATGATGCCGCTCCCGAGTAC
GTGACCCACTCGTTGGCCGACATTGCCAAGGAGCAGAATCCTCTTCTGCA
TCAGTACACTCGCGGTTACGGTCACGTTCGCCTGGTCAATGCGCTATCCA
AGCTCTATAGCGGTCTCGTCGGCAAGGAGCTAAATCCCCTCAGCGACATA
CTGATTACCTCAGGCGCCTATGAGGCTCTCTACTCCACCATCATGGGCCA
TGTGGACGTGGGCGACGAGGTGATCATTATTGAACCATTCTTTGATTGCT
ACGAGCCTATGGTCAAGATGGCCGGTGGAGTGCCCCGCTTTGTTCCCCTA
AAATTGCGCAAGACAGAGGGACCAATAAGCTCTGCCGATTGGGTGCTAGA
TGACGCTGAGTTCGAGAGTCTGTTCAACTCTAAAACAAAGATGATTATCC
TAAACACGCCCCACAACCCTATTGGAAAGGTCTTCAACCGGAAAGAGCTA
GAGAGGATAGCCGAGCTCTGCCGCAAGTGGAATGTGCTGTGCGTCTCGGA
CGAGGTGTATGAGTGGTTGGTGTTCGACGGAGCCGAGCACATCCGTATCT
GCACGCTGCCGGGCATGTGGGATCGCACCATTACTCTGGGATCAGCGGGC
AAGACCTTCTCAGTAACTGGTTGGAAAATAGGCTGGGCCTACGGACCCGC
TGAACTGATTCGAAACCTGCAGATGGTGCATCAGAACTCTGTGTACACCT
GTCCAACGCCGCTCCAGGAGGGCGTCGCACGCAGTTTCGAGGTAGAACTG
GCCCGTTTGGGTCAGCCGGAGAGCTACTTCCTTAGCCTGCCGCGCGAGCT
GAAGCAGAAGCGTGACTTCATGGCCAAGTTCCTGTCCGAATCCGGTATGC
GTCCCACCATTCCTGAGGGTGGCTACTTTATGCTGGCAGACTGGTCACCA
CTGGCGGGCAAGATTGATCTAAGCTCTGAGCCAGACAAGCATCGGGATTA
CAAGTTTACCAAGTGGATGACCAAGAACATGGGCTTGCAGGGCATACCGC
CAAGTGCCTTCTACAGCGAACCCAACAAACATCTGGGGGAGGACTTTGTG
CGCTACTGCTTCATCAAGAAGCAAGAGAACCTGGATAAGGCGGCCGAACT
GCTGTCCAAATGGAAATAGAAGCTTTCTAGACCAT

BS05903.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-RD 1353 CG6950-PD 1..1353 17..1369 6765 100 Plus
CG6950-RB 1353 CG6950-PB 1..1353 17..1369 6765 100 Plus
CG6950-RA 1353 CG6950-PA 1..1353 17..1369 6765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-RD 1430 CG6950-RD 51..1403 17..1369 6765 100 Plus
CG6950-RB 1638 CG6950-RB 259..1611 17..1369 6765 100 Plus
CG6950-RA 1665 CG6950-RA 286..1638 17..1369 6765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11820408..11821221 1369..556 4070 100 Minus
3R 32079331 3R 11821280..11821819 556..17 2700 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:37:46 has no hits.

BS05903.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:56 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1353 17..1369 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:11 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 184..1540 17..1373 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:32 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 286..1632 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:57 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 184..1540 17..1373 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:11 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 286..1632 17..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:11 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11820414..11821220 557..1363 100 <- Minus
3R 11821280..11821819 17..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:32 Download gff for BS05903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7646136..7646942 557..1363 100 <- Minus
arm_3R 7647002..7647541 17..556 100   Minus

BS05903.pep Sequence

Translation from 16 to 1368

> BS05903.pep
MLRSCQLTLSAAKRSLREQFQLQALRHQQTAIKMEKFDLPKRLQGSTPSV
WNEYIALAMQYKPLNLGQGFPDDAAPEYVTHSLADIAKEQNPLLHQYTRG
YGHVRLVNALSKLYSGLVGKELNPLSDILITSGAYEALYSTIMGHVDVGD
EVIIIEPFFDCYEPMVKMAGGVPRFVPLKLRKTEGPISSADWVLDDAEFE
SLFNSKTKMIILNTPHNPIGKVFNRKELERIAELCRKWNVLCVSDEVYEW
LVFDGAEHIRICTLPGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRN
LQMVHQNSVYTCPTPLQEGVARSFEVELARLGQPESYFLSLPRELKQKRD
FMAKFLSESGMRPTIPEGGYFMLADWSPLAGKIDLSSEPDKHRDYKFTKW
MTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFIKKQENLDKAAELLSKWK
*

BS05903.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-PD 450 CG6950-PD 1..450 1..450 2387 100 Plus
CG6950-PB 450 CG6950-PB 1..450 1..450 2387 100 Plus
CG6950-PA 450 CG6950-PA 1..450 1..450 2387 100 Plus
CG6950-PC 450 CG6950-PC 1..450 1..450 2387 100 Plus
CG1461-PB 501 CG1461-PB 176..449 126..415 225 23.5 Plus