Clone Sequence Records
BS05904.3prime Sequence
833 bp (832 high quality bases) assembled on 2005-12-03
> BS05904.3prime
ATGGTCTAGAAAGCTTCTATTGAGGATCGCTGTTTTCGAACTCGGTCTGA
AATACGCTGGGTATTTGATTGACCATGTCACTGGCCAGTAGGCTGCGGCC
AAACTTTTGAAATGCAGCCGCGTTTAACTTTTTCACAAAGTAACTAGAGG
CACATGCAGCTACCAGGGCGGGATTGGGTTCACCCGACTGCAGTGACCAC
GAGAAGAAGGTGGCCAAAGATCCGGAGAGCAGGTCACCTTGTCCACCGCA
CCTGCGACCGGAACCGCCGCTAGGCATTGAGTGAACTTCGTTGCAGTGAG
GGAGATAGATCTTGTCGTTGGCGCCCTTCTCCAGGACAGTTACTCCGGCT
CCCAGGAGGGACATTTTCTGGCGCGCCGCCTGGTCATCCTCGCCAAACAG
TCTCTGGAACTCCATGACATTTGGCGTGAGTATGACATTCGGCTGTCCAC
AGATCAGATTCAGATTGTCGTTGAGCAGAAACAGTCCATCGGCGTCTATG
ACAACTGGTTTCTTGGTGTCCATGCACAGCTTGAGTACGTTGGATGCCGT
CTTCAGGATGCCCGGCTCCCGACCCAGTCCAGGTCCAATAACAACGACGT
GAAGTCGCTCTAACCAGGGCGCTATTCTCTCCACTGCATCCACACAGTCT
AGCACTGGATGCACGATAAGATCGGGACTGTAGGACTTGATAATGGCCGA
CGCATTTGAATGGCAGAACACATGCGCCAGGTCAGCGCCCACTCTTATCG
AGGAAATGGCCGCGAAGTACGGCGCTCCGGTGTACTCCAGGGACCCACCG
ATCACTCCAATGCGTCCGTACTGTCCCTTGTGC
BS05904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-PA | 903 | CG10424-RA | 87..903 | 833..17 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 164..980 | 833..17 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096652..19097227 | 17..592 | 2880 | 100 | Plus |
| 3L | 28110227 | 3L | 19097304..19097546 | 591..833 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:46:55 has no hits.
BS05904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:43 Download gff for
BS05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 87..903 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:25 Download gff for
BS05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 87..903 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:57:41 Download gff for
BS05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 164..985 | 10..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:55 Download gff for
BS05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 164..985 | 10..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:55 Download gff for
BS05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096646..19097227 | 10..592 | 99 | <- | Plus |
| 3L | 19097306..19097546 | 593..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:57:41 Download gff for
BS05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089746..19090327 | 10..592 | 99 | <- | Plus |
| arm_3L | 19090406..19090646 | 593..833 | 100 | | Plus |
BS05904.5prime Sequence
892 bp (760 high quality bases) assembled on 2005-12-03
> BS05904.5prime
GAAGTTATCAGTCGACATGGCTGCAGTTTCGGATATTCCAGTGCACCTGC
CCAAGCTGCTGGCTCTGTTCAAGACGGTGGTGCCCAAGCTGGTGAACAAC
AAGCACAAGGGACAGTACGGACGCATTGGAGTGATCGGTGGGTCCCTGGA
GTACACCGGAGCGCCGTACTTCGCGGCCATTTCCTCGATAAGAGTGGGCG
CTGACCTGGCGCATGTGTTCTGCCATTCAAATGCGTCGGCCATTATCAAG
TCCTACAGTCCCGATCTTATCGTGCATCCAGTGCTAGACTGTGTGGATGC
AGTGGAGAGAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTGTTATTG
GACCTGGACTGGGTCGGGAGCCGGGCATCCTGAAGACGGCATCCAACGTA
CTCAAGCTGTGCATGGACACCAAGAAACCAGTTGTCATAGACGCCGATGG
ACTGTTTCTGCTCAACGACAATCTGAATCTGATCTGTGGACAGCCGAATG
TCATACTCACGCCAAATGTCATGGAGTTCCAGAGACTGTTTGGCGAGGAT
GACCAGGCGGCGCGCCAGAAAATGTCCCTCCTGGGAGCCGGAGTAACTGT
CCTGGAGAAGGGCGCCAACGACAAGATCTATCTCCCTCACTGCAACGAAG
TTCACTCAATGCCTAGCGGCGGTTCCGGTCGCAGGTGCGGTGGACAAGGT
GACCTGCTCTCCGGATCTTTGGCCACCTTCTTCTCGTGGTCACTGCAGTC
GGGTGAACCCAATCCCGCCCTGGTAGCTGCATGTGCCTCTAGTTACTTTG
TGAAAAAGTTAAACGCGGCTGCATTTCAAAAGTTTGGCCGCAGCCTACTG
GCCAGTGACATGGTCAATCAAATACCCAGCGTATTTCAGACC
BS05904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-PA | 903 | CG10424-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 78..953 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096679..19097227 | 892..344 | 2745 | 100 | Minus |
| 3L | 28110227 | 3L | 19097304..19097632 | 345..17 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:57:47 has no hits.
BS05904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:44 Download gff for
BS05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:26 Download gff for
BS05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:55:40 Download gff for
BS05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 72..953 | 11..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:33 Download gff for
BS05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 72..953 | 11..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:33 Download gff for
BS05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096679..19097227 | 344..892 | 100 | <- | Minus |
| 3L | 19097306..19097638 | 11..343 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:55:40 Download gff for
BS05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089779..19090327 | 344..892 | 100 | <- | Minus |
| arm_3L | 19090406..19090738 | 11..343 | 99 | | Minus |
BS05904.complete Sequence
935 bp (935 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635292
> BS05904.complete
GAAGTTATCAGTCGACATGGCTGCAGTTTCGGATATTCCAGTGCACCTGC
CCAAGCTGCTGGCTCTGTTCAAGACGGTGGTGCCCAAGCTGGTGAACAAC
AAGCACAAGGGACAGTACGGACGCATTGGAGTGATCGGTGGGTCCCTGGA
GTACACCGGAGCGCCGTACTTCGCGGCCATTTCCTCGATAAGAGTGGGCG
CTGACCTGGCGCATGTGTTCTGCCATTCAAATGCGTCGGCCATTATCAAG
TCCTACAGTCCCGATCTTATCGTGCATCCAGTGCTAGACTGTGTGGATGC
AGTGGAGAGAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTGTTATTG
GACCTGGACTGGGTCGGGAGCCGGGCATCCTGAAGACGGCATCCAACGTA
CTCAAGCTGTGCATGGACACCAAGAAACCAGTTGTCATAGACGCCGATGG
ACTGTTTCTGCTCAACGACAATCTGAATCTGATCTGTGGACAGCCGAATG
TCATACTCACGCCAAATGTCATGGAGTTCCAGAGACTGTTTGGCGAGGAT
GACCAGGCGGCGCGCCAGAAAATGTCCCTCCTGGGAGCCGGAGTAACTGT
CCTGGAGAAGGGCGCCAACGACAAGATCTATCTCCCTCACTGCAACGAAG
TTCACTCAATGCCTAGCGGCGGTTCCGGTCGCAGGTGCGGTGGACAAGGT
GACCTGCTCTCCGGATCTTTGGCCACCTTCTTCTCGTGGTCACTGCAGTC
GGGTGAACCCAATCCCGCCCTGGTAGCTGCATGTGCCTCTAGTTACTTTG
TGAAAAAGTTAAACGCGGCTGCATTTCAAAAGTTTGGCCGCAGCCTACTG
GCCAGTGACATGGTCAATCAAATACCCAGCGTATTTCAGACCGAGTTCGA
AAACAGCGATCCTCAATAGAAGCTTTCTAGACCAT
BS05904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 903 | CG10424-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 78..980 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096652..19097227 | 919..344 | 2880 | 100 | Minus |
| 3L | 28110227 | 3L | 19097304..19097632 | 345..17 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:03:53 has no hits.
BS05904.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:58 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:12 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 75..988 | 11..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:12 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 78..980 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:58 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 75..988 | 11..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:00 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 78..980 | 17..919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:00 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096652..19097227 | 344..919 | 100 | <- | Minus |
| 3L | 19097306..19097632 | 17..343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:12 Download gff for
BS05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089752..19090327 | 344..919 | 100 | <- | Minus |
| arm_3L | 19090406..19090732 | 17..343 | 100 | | Minus |
BS05904.pep Sequence
Translation from 16 to 918
> BS05904.pep
MAAVSDIPVHLPKLLALFKTVVPKLVNNKHKGQYGRIGVIGGSLEYTGAP
YFAAISSIRVGADLAHVFCHSNASAIIKSYSPDLIVHPVLDCVDAVERIA
PWLERLHVVVIGPGLGREPGILKTASNVLKLCMDTKKPVVIDADGLFLLN
DNLNLICGQPNVILTPNVMEFQRLFGEDDQAARQKMSLLGAGVTVLEKGA
NDKIYLPHCNEVHSMPSGGSGRRCGGQGDLLSGSLATFFSWSLQSGEPNP
ALVAACASSYFVKKLNAAAFQKFGRSLLASDMVNQIPSVFQTEFENSDPQ
*
BS05904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-PA | 300 | CG10424-PA | 1..300 | 1..300 | 1553 | 100 | Plus |
