Clone BS05905 Report

Search the DGRC for BS05905

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptkraken-RA
Protein status:BS05905.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05905.3prime Sequence

881 bp (830 high quality bases) assembled on 2005-12-03

> BS05905.3prime
ATGGTCTAGAAAGCTTTTACGCCTCCTTCAGGAATCGAATAATGTGGGGC
GCCACTCGATCCGGGGTGACCAGGTGCAGATGATGGGTGCCGGGCACCTC
AACGTAGACCACCTTCGCGGCATTCTCCCGCAGCGTGGCAATCACATCCG
CATACACCTGTGGCGTCTCGAACTTCATGCCGGGAATACCCCGAATGTTG
AGCACGCGACAGCGAATCTGGCGTGCGTAGGCCAACGTCTGCTCGGCGGT
GAACATGCCCAGCAGGCTTACTTTTAGCCTCAGATCCCTGGCAAAGAGGT
AGCCATTCTTGCTCGGATTGTGCCTCATTCCCCTGTTCATGAGCACACGA
ACCGAAGGCTCATCCACGGACCCATCGTACGCGTCCAGCACCAGTTTGAT
CATCTCGTCGTACGAGTAGCAGGGCTGCTTGCTCTCCGGCAGGGTTTCGT
AGTCCAGGAACTTGTCCAGCGCCCTGCCAGTGCCCTCCGCCATCCGTTGG
GTGCCGCGCACCGTGGGACCCGCGATATCGATGTTGATCAGCTTCTCCAC
CTCCGTGGGAAAGCTGGCCGCGTACATGAAGGTCAGAGCTCCGCCCAGCG
AGTGGCCCAGCAGAGTGACGTTCTTCCAGTTATACTTGCGGACTATCCGG
CGAATCAGGCATATGCCGTCCCAGAAGATGAAGTACTGCATGCCCATCGG
ATAGTGCGACGACTTGCCGTGCCCGGGCAGATCGATGGCCAGGATGGAGG
TGTCCGCCGGTAGCAGGGGGCACAGCCTGTCGAAGCTGCCGCAGTTGTCC
TGCCAGCCGTGCAGGGCGATGATGGGCTGCCTCTCCCTCGAGCCCCACCA
CTTGGCCTCAACGGTTCCCCAGGGCACCGCG

BS05905.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3943-PA 996 kraken-RA 132..996 881..17 4300 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 1240 CG3943-RB 220..1084 881..17 4310 99.9 Minus
kraken-RA 1320 CG3943-RA 300..1164 881..17 4310 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854383 856..17 4185 99.9 Minus
Blast to na_te.dros performed on 2015-02-09 01:46:42 has no hits.

BS05905.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:45 Download gff for BS05905.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 132..996 17..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:28 Download gff for BS05905.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 132..996 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:57:38 Download gff for BS05905.3prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 300..1168 11..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:53 Download gff for BS05905.3prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 300..1168 11..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:53 Download gff for BS05905.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 853253..853278 856..881 100 -> Minus
2L 853545..854387 11..855 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:57:38 Download gff for BS05905.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 853253..853278 856..881 100 -> Minus
arm_2L 853545..854387 11..855 99   Minus

BS05905.5prime Sequence

867 bp (784 high quality bases) assembled on 2005-12-03

> BS05905.5prime
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAAAAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTGCTCANCATTCGGGGTATTCCCGGC
ATGAAGTTCGAGACGCC

BS05905.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3943-PA 996 kraken-RA 1..851 17..867 4236 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 1240 CG3943-RB 88..939 16..867 4249 99.9 Plus
kraken-RA 1320 CG3943-RA 168..1019 16..867 4249 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854238 173..867 3464 99.9 Plus
2L 23513712 2L 853192..853278 87..173 435 100 Plus
2L 23513712 2L 852935..853005 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:57:17 has no hits.

BS05905.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:46 Download gff for BS05905.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:29 Download gff for BS05905.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:12:52 Download gff for BS05905.5prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 162..1019 7..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:18 Download gff for BS05905.5prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 162..1019 7..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:18 Download gff for BS05905.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 853192..853278 87..173 100 -> Plus
2L 852929..853005 7..86 95 -> Plus
2L 853545..854238 174..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:12:52 Download gff for BS05905.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 852929..853005 7..86 95 -> Plus
arm_2L 853192..853278 87..173 100 -> Plus
arm_2L 853545..854238 174..867 99   Plus

BS05905.complete Sequence

1028 bp (1028 high quality bases) assembled on 2005-10-27

> BS05905.complete
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAAAAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTGCTCAACATTCGGGGTATTCCCGGC
ATGAAGTTCGAGACGCCACAGGTGTATGCGGATGTGATTGCCACGCTGCG
GGAGAATGCCGCGAAGGTGGTCTACGTTGAGGTGCCCGGCACCCATCATC
TGCACCTGGTCACCCCGGATCGAGTGGCGCCCCACATTATTCGATTCCTG
AAGGAGGCGTAAAAGCTTTCTAGACCAT

BS05905.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 996 CG3943-PB 1..996 17..1012 4980 100 Plus
kraken-RA 996 CG3943-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 1240 CG3943-RB 88..1084 16..1012 4985 100 Plus
kraken-RA 1320 CG3943-RA 168..1164 16..1012 4985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854383 173..1012 4200 100 Plus
2L 23513712 2L 853192..853278 87..173 435 100 Plus
2L 23513712 2L 852935..853005 16..86 355 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:07:01 has no hits.

BS05905.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:59 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:14 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 163..1169 7..1018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:23 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 169..1162 17..1010 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:59 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 163..1169 7..1018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:51 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 169..1162 17..1010 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:51 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
2L 852936..853005 17..86 100 -> Plus
2L 853192..853278 87..173 100 -> Plus
2L 853545..854381 174..1010 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:23 Download gff for BS05905.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 852936..853005 17..86 100 -> Plus
arm_2L 853192..853278 87..173 100 -> Plus
arm_2L 853545..854381 174..1010 100   Plus

BS05905.pep Sequence

Translation from 16 to 1011

> BS05905.pep
MGQTRVAATTAAQSPAAELSPETNGQTEEPLQLLGEDSWEEFSIAVPWGT
VEAKWWGSKERQPIIALHGWQDNCGSFDRLCPLLPADTSILAIDLPGHGK
SSHYPMGMQYFIFWDGICLIRRIVRKYNWKNVTLLGHSLGGALTFMYAAS
FPTEVEKLINIDIAGPTVRGTQRMAEGTGRALDKFLDYETLPESKQPCYS
YDEMIKLVLDAYDGSVDEPSVRVLMNRGMRHNPSKNGYLFARDLRLKVSL
LGMFTAEQTLAYARQIRCRVLNIRGIPGMKFETPQVYADVIATLRENAAK
VVYVEVPGTHHLHLVTPDRVAPHIIRFLKEA*

BS05905.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-PB 331 CG3943-PB 1..331 1..331 1752 100 Plus
kraken-PA 331 CG3943-PA 1..331 1..331 1752 100 Plus
CG7632-PA 330 CG7632-PA 25..324 29..328 518 35.7 Plus
CG7632-PB 312 CG7632-PB 15..306 38..328 516 36.1 Plus
CG11309-PF 348 CG11309-PF 37..326 41..329 495 37.3 Plus