Clone Sequence Records
BS05905.3prime Sequence
881 bp (830 high quality bases) assembled on 2005-12-03
> BS05905.3prime
ATGGTCTAGAAAGCTTTTACGCCTCCTTCAGGAATCGAATAATGTGGGGC
GCCACTCGATCCGGGGTGACCAGGTGCAGATGATGGGTGCCGGGCACCTC
AACGTAGACCACCTTCGCGGCATTCTCCCGCAGCGTGGCAATCACATCCG
CATACACCTGTGGCGTCTCGAACTTCATGCCGGGAATACCCCGAATGTTG
AGCACGCGACAGCGAATCTGGCGTGCGTAGGCCAACGTCTGCTCGGCGGT
GAACATGCCCAGCAGGCTTACTTTTAGCCTCAGATCCCTGGCAAAGAGGT
AGCCATTCTTGCTCGGATTGTGCCTCATTCCCCTGTTCATGAGCACACGA
ACCGAAGGCTCATCCACGGACCCATCGTACGCGTCCAGCACCAGTTTGAT
CATCTCGTCGTACGAGTAGCAGGGCTGCTTGCTCTCCGGCAGGGTTTCGT
AGTCCAGGAACTTGTCCAGCGCCCTGCCAGTGCCCTCCGCCATCCGTTGG
GTGCCGCGCACCGTGGGACCCGCGATATCGATGTTGATCAGCTTCTCCAC
CTCCGTGGGAAAGCTGGCCGCGTACATGAAGGTCAGAGCTCCGCCCAGCG
AGTGGCCCAGCAGAGTGACGTTCTTCCAGTTATACTTGCGGACTATCCGG
CGAATCAGGCATATGCCGTCCCAGAAGATGAAGTACTGCATGCCCATCGG
ATAGTGCGACGACTTGCCGTGCCCGGGCAGATCGATGGCCAGGATGGAGG
TGTCCGCCGGTAGCAGGGGGCACAGCCTGTCGAAGCTGCCGCAGTTGTCC
TGCCAGCCGTGCAGGGCGATGATGGGCTGCCTCTCCCTCGAGCCCCACCA
CTTGGCCTCAACGGTTCCCCAGGGCACCGCG
BS05905.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3943-PA | 996 | kraken-RA | 132..996 | 881..17 | 4300 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 1240 | CG3943-RB | 220..1084 | 881..17 | 4310 | 99.9 | Minus |
kraken-RA | 1320 | CG3943-RA | 300..1164 | 881..17 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 853544..854383 | 856..17 | 4185 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:46:42 has no hits.
BS05905.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:45 Download gff for
BS05905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 132..996 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:28 Download gff for
BS05905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 132..996 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:57:38 Download gff for
BS05905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 300..1168 | 11..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:10:53 Download gff for
BS05905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 300..1168 | 11..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:10:53 Download gff for
BS05905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 853253..853278 | 856..881 | 100 | -> | Minus |
2L | 853545..854387 | 11..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:57:38 Download gff for
BS05905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 853253..853278 | 856..881 | 100 | -> | Minus |
arm_2L | 853545..854387 | 11..855 | 99 | | Minus |
BS05905.5prime Sequence
867 bp (784 high quality bases) assembled on 2005-12-03
> BS05905.5prime
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAAAAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTGCTCANCATTCGGGGTATTCCCGGC
ATGAAGTTCGAGACGCC
BS05905.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3943-PA | 996 | kraken-RA | 1..851 | 17..867 | 4236 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 1240 | CG3943-RB | 88..939 | 16..867 | 4249 | 99.9 | Plus |
kraken-RA | 1320 | CG3943-RA | 168..1019 | 16..867 | 4249 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 853544..854238 | 173..867 | 3464 | 99.9 | Plus |
2L | 23513712 | 2L | 853192..853278 | 87..173 | 435 | 100 | Plus |
2L | 23513712 | 2L | 852935..853005 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:57:17 has no hits.
BS05905.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:46 Download gff for
BS05905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:29 Download gff for
BS05905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:12:52 Download gff for
BS05905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 162..1019 | 7..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:18 Download gff for
BS05905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 162..1019 | 7..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:18 Download gff for
BS05905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 853192..853278 | 87..173 | 100 | -> | Plus |
2L | 852929..853005 | 7..86 | 95 | -> | Plus |
2L | 853545..854238 | 174..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:12:52 Download gff for
BS05905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 852929..853005 | 7..86 | 95 | -> | Plus |
arm_2L | 853192..853278 | 87..173 | 100 | -> | Plus |
arm_2L | 853545..854238 | 174..867 | 99 | | Plus |
BS05905.complete Sequence
1028 bp (1028 high quality bases) assembled on 2005-10-27
> BS05905.complete
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAAAAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTGCTCAACATTCGGGGTATTCCCGGC
ATGAAGTTCGAGACGCCACAGGTGTATGCGGATGTGATTGCCACGCTGCG
GGAGAATGCCGCGAAGGTGGTCTACGTTGAGGTGCCCGGCACCCATCATC
TGCACCTGGTCACCCCGGATCGAGTGGCGCCCCACATTATTCGATTCCTG
AAGGAGGCGTAAAAGCTTTCTAGACCAT
BS05905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 996 | CG3943-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
kraken-RA | 996 | CG3943-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 1240 | CG3943-RB | 88..1084 | 16..1012 | 4985 | 100 | Plus |
kraken-RA | 1320 | CG3943-RA | 168..1164 | 16..1012 | 4985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 853544..854383 | 173..1012 | 4200 | 100 | Plus |
2L | 23513712 | 2L | 853192..853278 | 87..173 | 435 | 100 | Plus |
2L | 23513712 | 2L | 852935..853005 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:01 has no hits.
BS05905.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:59 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:14 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 163..1169 | 7..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:23 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 169..1162 | 17..1010 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:59 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 163..1169 | 7..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:51 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 169..1162 | 17..1010 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:51 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 852936..853005 | 17..86 | 100 | -> | Plus |
2L | 853192..853278 | 87..173 | 100 | -> | Plus |
2L | 853545..854381 | 174..1010 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:23 Download gff for
BS05905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 852936..853005 | 17..86 | 100 | -> | Plus |
arm_2L | 853192..853278 | 87..173 | 100 | -> | Plus |
arm_2L | 853545..854381 | 174..1010 | 100 | | Plus |
BS05905.pep Sequence
Translation from 16 to 1011
> BS05905.pep
MGQTRVAATTAAQSPAAELSPETNGQTEEPLQLLGEDSWEEFSIAVPWGT
VEAKWWGSKERQPIIALHGWQDNCGSFDRLCPLLPADTSILAIDLPGHGK
SSHYPMGMQYFIFWDGICLIRRIVRKYNWKNVTLLGHSLGGALTFMYAAS
FPTEVEKLINIDIAGPTVRGTQRMAEGTGRALDKFLDYETLPESKQPCYS
YDEMIKLVLDAYDGSVDEPSVRVLMNRGMRHNPSKNGYLFARDLRLKVSL
LGMFTAEQTLAYARQIRCRVLNIRGIPGMKFETPQVYADVIATLRENAAK
VVYVEVPGTHHLHLVTPDRVAPHIIRFLKEA*
BS05905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-PB | 331 | CG3943-PB | 1..331 | 1..331 | 1752 | 100 | Plus |
kraken-PA | 331 | CG3943-PA | 1..331 | 1..331 | 1752 | 100 | Plus |
CG7632-PA | 330 | CG7632-PA | 25..324 | 29..328 | 518 | 35.7 | Plus |
CG7632-PB | 312 | CG7632-PB | 15..306 | 38..328 | 516 | 36.1 | Plus |
CG11309-PF | 348 | CG11309-PF | 37..326 | 41..329 | 495 | 37.3 | Plus |