Clone Sequence Records
BS05906.3prime Sequence
890 bp (823 high quality bases) assembled on 2005-12-03
> BS05906.3prime
ATGGTCTAGAAAGCTTTCACTTTTCCTTCTTCTGTATGGAGGCAATCCGC
CAGGCGCCCACCAAATATCGCACCCAGATCATGAACAAATCCCTGCCCAT
TTGCAGCCACGACCAAAATGGTGTCAGTTTCGAACCATCGATCTCCGTCC
ATCGAACGGCAACCTCGGACATTGGTAGCTTCAAATTCTCAGCGAGGTAC
AGCAGCTCAACATCAAAGGCCCAGCGCTCCACATGCAGACTGGTGAAGAG
TTTCCTGGCCGTCGTTCGGGTGAACAGCTTGAAGCCACACTGGGTATCGC
GAATGGAGCGCACGGCAAACAGCCAGACGAGGAAATGAAAGCCGTGCATC
AAAATTGTTCTGAAGAAACTCCTTGTTGCAATCGCATCGTTCTCCAGATG
TGCTCTCGATCCAATGGCAATGCCATCGTCTCGCCATTCGGGAGCTAATT
GCTTGAGGGCCACCTCCAGTTTATCGTAGTCGGGAAACTTGGTGGCTCCA
TCCGCATCAGCGAAGAGCAGATTACGACCCCGTGCACTTAGCATACCCAT
GCGAACGGCACCTCCTTTCCCACGATTTTCGATGAGTTCCAGCACGCGTA
CCTTTTCTGCTCCGTGCTTTTTCGAGTAACCCAAGGCGACGGATACGGTG
GCATCCTGACTGCCGTCACTGACCACGATGACCTCGTATGTGAAATTGGG
AGTGCCAGCAGATTTCTGTTCCAGAAAGGCCAAGCACTCGTCCAGCATAG
AAGGCAAGCGCTGCTCCTCATTGTAAGCTGGTACGATGACACTGAGCTCC
AAACTTGGCGAGTCCTCGAGACTGGGAAAAGTCACTGTTTTAATGGTGTG
CGGGTCCAGGAAGGTCTCCTCATCCTTGTGCCGCTTGATG
BS05906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7870-PA | 981 | CG7870-RA | 108..981 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 1335 | CG7870-RA | 270..1143 | 890..17 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8301936..8302332 | 360..756 | 1985 | 100 | Plus |
2L | 23513712 | 2L | 8301537..8301882 | 17..362 | 1730 | 100 | Plus |
2L | 23513712 | 2L | 8302524..8302657 | 757..890 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:26:04 has no hits.
BS05906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:47 Download gff for
BS05906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 108..981 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:31 Download gff for
BS05906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 108..981 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:20 Download gff for
BS05906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 270..1143 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:51 Download gff for
BS05906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 270..1143 | 17..890 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:51 Download gff for
BS05906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8301537..8301879 | 17..359 | 100 | <- | Plus |
2L | 8301936..8302332 | 360..756 | 100 | <- | Plus |
2L | 8302524..8302657 | 757..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:20 Download gff for
BS05906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8301537..8301879 | 17..359 | 100 | <- | Plus |
arm_2L | 8301936..8302332 | 360..756 | 100 | <- | Plus |
arm_2L | 8302524..8302657 | 757..890 | 100 | | Plus |
BS05906.5prime Sequence
946 bp (823 high quality bases) assembled on 2005-12-03
> BS05906.5prime
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGA
BS05906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7870-PA | 981 | CG7870-RA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 1335 | CG7870-RA | 163..1092 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8301936..8302332 | 654..258 | 1985 | 100 | Minus |
2L | 23513712 | 2L | 8301588..8301882 | 946..652 | 1475 | 100 | Minus |
2L | 23513712 | 2L | 8302524..8302699 | 257..82 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8302758..8302823 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:12:57 has no hits.
BS05906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:48 Download gff for
BS05906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:32 Download gff for
BS05906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:15 Download gff for
BS05906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1091 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:38 Download gff for
BS05906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1091 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:38 Download gff for
BS05906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8301589..8301879 | 655..945 | 100 | <- | Minus |
2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
2L | 8302758..8302823 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:15 Download gff for
BS05906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8301589..8301879 | 655..945 | 100 | <- | Minus |
arm_2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
arm_2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
arm_2L | 8302758..8302823 | 17..82 | 100 | | Minus |
BS05906.complete Sequence
1013 bp (1013 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635293
> BS05906.complete
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGATATT
TGGTGGGCGCCTGGCGGATTGCCTCCATACAGAAGAAGGAAAAGTGAAAG
CTTTCTAGACCAT
BS05906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 981 | CG7870-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 1335 | CG7870-RA | 163..1143 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8301936..8302332 | 654..258 | 1985 | 100 | Minus |
2L | 23513712 | 2L | 8301537..8301882 | 997..652 | 1730 | 100 | Minus |
2L | 23513712 | 2L | 8302524..8302699 | 257..82 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8302758..8302823 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:41:22 has no hits.
BS05906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:00 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:16 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-RA | 161..1141 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:06 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1142 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:00 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-RA | 161..1141 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:25 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1142 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:25 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8301538..8301879 | 655..996 | 100 | <- | Minus |
2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
2L | 8302758..8302823 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:06 Download gff for
BS05906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8301538..8301879 | 655..996 | 100 | <- | Minus |
arm_2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
arm_2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
arm_2L | 8302758..8302823 | 17..82 | 100 | | Minus |
BS05906.pep Sequence
Translation from 16 to 996
> BS05906.pep
MWTCLCQLCFYLLSTLAVAALSIAALVLYKTKPYPNIKRHKDEETFLDPH
TIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTP
NFTYEVIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRM
GMLSARGRNLLFADADGATKFPDYDKLEVALKQLAPEWRDDGIAIGSRAH
LENDAIATRSFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKL
FTSLHVERWAFDVELLYLAENLKLPMSEVAVRWTEIDGSKLTPFWSWLQM
GRDLFMIWVRYLVGAWRIASIQKKEK*
BS05906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-PA | 326 | CG7870-PA | 1..326 | 1..326 | 1698 | 100 | Plus |
CG10166-PA | 241 | CG10166-PA | 9..214 | 69..285 | 165 | 26.4 | Plus |