Clone BS05906 Report

Search the DGRC for BS05906

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptwol-RA
Protein status:BS05906.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05906.3prime Sequence

890 bp (823 high quality bases) assembled on 2005-12-03

> BS05906.3prime
ATGGTCTAGAAAGCTTTCACTTTTCCTTCTTCTGTATGGAGGCAATCCGC
CAGGCGCCCACCAAATATCGCACCCAGATCATGAACAAATCCCTGCCCAT
TTGCAGCCACGACCAAAATGGTGTCAGTTTCGAACCATCGATCTCCGTCC
ATCGAACGGCAACCTCGGACATTGGTAGCTTCAAATTCTCAGCGAGGTAC
AGCAGCTCAACATCAAAGGCCCAGCGCTCCACATGCAGACTGGTGAAGAG
TTTCCTGGCCGTCGTTCGGGTGAACAGCTTGAAGCCACACTGGGTATCGC
GAATGGAGCGCACGGCAAACAGCCAGACGAGGAAATGAAAGCCGTGCATC
AAAATTGTTCTGAAGAAACTCCTTGTTGCAATCGCATCGTTCTCCAGATG
TGCTCTCGATCCAATGGCAATGCCATCGTCTCGCCATTCGGGAGCTAATT
GCTTGAGGGCCACCTCCAGTTTATCGTAGTCGGGAAACTTGGTGGCTCCA
TCCGCATCAGCGAAGAGCAGATTACGACCCCGTGCACTTAGCATACCCAT
GCGAACGGCACCTCCTTTCCCACGATTTTCGATGAGTTCCAGCACGCGTA
CCTTTTCTGCTCCGTGCTTTTTCGAGTAACCCAAGGCGACGGATACGGTG
GCATCCTGACTGCCGTCACTGACCACGATGACCTCGTATGTGAAATTGGG
AGTGCCAGCAGATTTCTGTTCCAGAAAGGCCAAGCACTCGTCCAGCATAG
AAGGCAAGCGCTGCTCCTCATTGTAAGCTGGTACGATGACACTGAGCTCC
AAACTTGGCGAGTCCTCGAGACTGGGAAAAGTCACTGTTTTAATGGTGTG
CGGGTCCAGGAAGGTCTCCTCATCCTTGTGCCGCTTGATG

BS05906.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7870-PA 981 CG7870-RA 108..981 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1335 CG7870-RA 270..1143 890..17 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301936..8302332 360..756 1985 100 Plus
2L 23513712 2L 8301537..8301882 17..362 1730 100 Plus
2L 23513712 2L 8302524..8302657 757..890 670 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:26:04 has no hits.

BS05906.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:47 Download gff for BS05906.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 108..981 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:31 Download gff for BS05906.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 108..981 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:20 Download gff for BS05906.3prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 270..1143 17..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:51 Download gff for BS05906.3prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 270..1143 17..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:51 Download gff for BS05906.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8301537..8301879 17..359 100 <- Plus
2L 8301936..8302332 360..756 100 <- Plus
2L 8302524..8302657 757..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:20 Download gff for BS05906.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301537..8301879 17..359 100 <- Plus
arm_2L 8301936..8302332 360..756 100 <- Plus
arm_2L 8302524..8302657 757..890 100   Plus

BS05906.5prime Sequence

946 bp (823 high quality bases) assembled on 2005-12-03

> BS05906.5prime
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGA

BS05906.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7870-PA 981 CG7870-RA 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1335 CG7870-RA 163..1092 17..946 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301936..8302332 654..258 1985 100 Minus
2L 23513712 2L 8301588..8301882 946..652 1475 100 Minus
2L 23513712 2L 8302524..8302699 257..82 880 100 Minus
2L 23513712 2L 8302758..8302823 82..17 330 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:12:57 has no hits.

BS05906.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:25:48 Download gff for BS05906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 1..929 17..945 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:32 Download gff for BS05906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 1..929 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:15 Download gff for BS05906.5prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1091 17..945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:38 Download gff for BS05906.5prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1091 17..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:38 Download gff for BS05906.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8301589..8301879 655..945 100 <- Minus
2L 8301936..8302332 258..654 100 <- Minus
2L 8302524..8302698 83..257 100 <- Minus
2L 8302758..8302823 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:15 Download gff for BS05906.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301589..8301879 655..945 100 <- Minus
arm_2L 8301936..8302332 258..654 100 <- Minus
arm_2L 8302524..8302698 83..257 100 <- Minus
arm_2L 8302758..8302823 17..82 100   Minus

BS05906.complete Sequence

1013 bp (1013 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635293

> BS05906.complete
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGATATT
TGGTGGGCGCCTGGCGGATTGCCTCCATACAGAAGAAGGAAAAGTGAAAG
CTTTCTAGACCAT

BS05906.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 981 CG7870-PA 1..981 17..997 4905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1335 CG7870-RA 163..1143 17..997 4905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301936..8302332 654..258 1985 100 Minus
2L 23513712 2L 8301537..8301882 997..652 1730 100 Minus
2L 23513712 2L 8302524..8302699 257..82 880 100 Minus
2L 23513712 2L 8302758..8302823 82..17 330 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:41:22 has no hits.

BS05906.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:00 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 1..981 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:16 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 161..1141 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:06 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1142 17..996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:00 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 161..1141 17..997 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:25 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1142 17..996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:25 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8301538..8301879 655..996 100 <- Minus
2L 8301936..8302332 258..654 100 <- Minus
2L 8302524..8302698 83..257 100 <- Minus
2L 8302758..8302823 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:06 Download gff for BS05906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301538..8301879 655..996 100 <- Minus
arm_2L 8301936..8302332 258..654 100 <- Minus
arm_2L 8302524..8302698 83..257 100 <- Minus
arm_2L 8302758..8302823 17..82 100   Minus

BS05906.pep Sequence

Translation from 16 to 996

> BS05906.pep
MWTCLCQLCFYLLSTLAVAALSIAALVLYKTKPYPNIKRHKDEETFLDPH
TIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTP
NFTYEVIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRM
GMLSARGRNLLFADADGATKFPDYDKLEVALKQLAPEWRDDGIAIGSRAH
LENDAIATRSFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKL
FTSLHVERWAFDVELLYLAENLKLPMSEVAVRWTEIDGSKLTPFWSWLQM
GRDLFMIWVRYLVGAWRIASIQKKEK*

BS05906.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
wol-PA 326 CG7870-PA 1..326 1..326 1698 100 Plus
CG10166-PA 241 CG10166-PA 9..214 69..285 165 26.4 Plus