Clone Sequence Records
BS05913.5prime Sequence
354 bp (353 high quality bases) assembled on 2005-12-03
> BS05913.5prime
GAAGTTATCAGTCGACATGTCGATCAGGAGAGCTATGTCCACAACGGCCT
CAAAGGAGTGGCGGGATTACTTTATGAGTACCCACTTCTGGGGCCCGGTG
GCCAACTGGGGTATTCCGGTGGCTGCTCTCGCCGACACACAAAAGAGTCC
CAAATTCATCTCCGGCAAAATGACATTGGCTCTGACCCTGTACTCGTGCA
TCTTTATGCGATTTGCCTACAAGGTCCAGCCCAGGAATTGGCTGCTCTTC
GCCTGCCACGCTACCAATGCCACCGCCCAATCGATCCAGGGTCTTCGCTT
CCTTCACTACAATTACGGGTCTAAGGAGCAGCAGGCGTAAAAGCTTTCTA
GACC
BS05913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14290-PB | 324 | CG14290-RB | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mpc1-RC | 1155 | CG14290-RC | 329..654 | 16..341 | 1630 | 100 | Plus |
Mpc1-RB | 1058 | CG14290-RB | 329..654 | 16..341 | 1630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18927497..18927659 | 341..179 | 815 | 100 | Minus |
3R | 32079331 | 3R | 18928028..18928130 | 179..77 | 515 | 100 | Minus |
3R | 32079331 | 3R | 18928195..18928257 | 78..16 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:14:02 has no hits.
BS05913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:02 Download gff for
BS05913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-PB | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:50 Download gff for
BS05913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-PB | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:37 Download gff for
BS05913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpc1-RB | 324..654 | 10..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:59 Download gff for
BS05913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpc1-RB | 324..654 | 10..341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:59 Download gff for
BS05913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18927497..18927658 | 180..341 | 100 | <- | Minus |
3R | 18928028..18928128 | 79..179 | 100 | <- | Minus |
3R | 18928195..18928262 | 10..78 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:37 Download gff for
BS05913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14753219..14753380 | 180..341 | 100 | <- | Minus |
arm_3R | 14753750..14753850 | 79..179 | 100 | <- | Minus |
arm_3R | 14753917..14753984 | 10..78 | 95 | | Minus |
BS05913.3prime Sequence
354 bp (353 high quality bases) assembled on 2005-12-03
> BS05913.3prime
ATGGTCTAGAAAGCTTTTACGCCTGCTGCTCCTTAGACCCGTAATTGTAG
TGAAGGAAGCGAAGACCCTGGATCGATTGGGCGGTGGCATTGGTAGCGTG
GCAGGCGAAGAGCAGCCAATTCCTGGGCTGGACCTTGTAGGCAAATCGCA
TAAAGATGCACGAGTACAGGGTCAGAGCCAATGTCATTTTGCCGGAGATG
AATTTGGGACTCTTTTGTGTGTCGGCGAGAGCAGCCACCGGAATACCCCA
GTTGGCCACCGGGCCCCAGAAGTGGGTACTCATAAAGTAATCCCGCCACT
CCTTTGAGGCCGTTGTGGACATAGCTCTCCTGATCGACATGTCGACTGAT
AACT
BS05913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14290-PB | 324 | CG14290-RB | 1..324 | 340..17 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mpc1-RC | 1155 | CG14290-RC | 329..654 | 341..16 | 1630 | 100 | Minus |
Mpc1-RB | 1058 | CG14290-RB | 329..654 | 341..16 | 1630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18927497..18927659 | 16..178 | 815 | 100 | Plus |
3R | 32079331 | 3R | 18928028..18928130 | 178..280 | 515 | 100 | Plus |
3R | 32079331 | 3R | 18928195..18928257 | 279..341 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:08:58 has no hits.
BS05913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:01 Download gff for
BS05913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-PB | 1..324 | 17..340 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:49 Download gff for
BS05913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-PB | 1..324 | 17..340 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:52 Download gff for
BS05913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpc1-RB | 324..654 | 16..347 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:36 Download gff for
BS05913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpc1-RB | 324..654 | 16..347 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:36 Download gff for
BS05913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18928195..18928262 | 279..347 | 95 | | Plus |
3R | 18927497..18927658 | 16..177 | 100 | <- | Plus |
3R | 18928028..18928128 | 178..278 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:52 Download gff for
BS05913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14753219..14753380 | 16..177 | 100 | <- | Plus |
arm_3R | 14753750..14753850 | 178..278 | 100 | <- | Plus |
arm_3R | 14753917..14753984 | 279..347 | 95 | | Plus |
BS05913.complete Sequence
356 bp (356 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635295
> BS05913.complete
GAAGTTATCAGTCGACATGTCGATCAGGAGAGCTATGTCCACAACGGCCT
CAAAGGAGTGGCGGGATTACTTTATGAGTACCCACTTCTGGGGCCCGGTG
GCCAACTGGGGTATTCCGGTGGCTGCTCTCGCCGACACACAAAAGAGTCC
CAAATTCATCTCCGGCAAAATGACATTGGCTCTGACCCTGTACTCGTGCA
TCTTTATGCGATTTGCCTACAAGGTCCAGCCCAGGAATTGGCTGCTCTTC
GCCTGCCACGCTACCAATGCCACCGCCCAATCGATCCAGGGTCTTCGCTT
CCTTCACTACAATTACGGGTCTAAGGAGCAGCAGGCGTAAAAGCTTTCTA
GACCAT
BS05913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mpc1-RC | 324 | CG14290-PC | 1..324 | 17..340 | 1620 | 100 | Plus |
Mpc1-RB | 324 | CG14290-PB | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mpc1-RC | 1155 | CG14290-RC | 329..654 | 16..341 | 1630 | 100 | Plus |
Mpc1-RB | 1058 | CG14290-RB | 329..654 | 16..341 | 1630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18927497..18927659 | 341..179 | 815 | 100 | Minus |
3R | 32079331 | 3R | 18928028..18928130 | 179..77 | 515 | 100 | Minus |
3R | 32079331 | 3R | 18928195..18928257 | 78..16 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:57:10 has no hits.
BS05913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:37 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-RB | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:59 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-RB | 339..669 | 10..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:22 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpc1-RB | 330..651 | 17..338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:37 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14290-RB | 339..669 | 10..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:41 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpc1-RB | 330..651 | 17..338 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:41 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18928028..18928128 | 79..179 | 100 | <- | Minus |
3R | 18928195..18928256 | 17..78 | 100 | | Minus |
3R | 18927500..18927658 | 180..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:22 Download gff for
BS05913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14753750..14753850 | 79..179 | 100 | <- | Minus |
arm_3R | 14753917..14753978 | 17..78 | 100 | | Minus |
arm_3R | 14753222..14753380 | 180..338 | 100 | <- | Minus |
BS05913.pep Sequence
Translation from 16 to 339
> BS05913.pep
MSIRRAMSTTASKEWRDYFMSTHFWGPVANWGIPVAALADTQKSPKFISG
KMTLALTLYSCIFMRFAYKVQPRNWLLFACHATNATAQSIQGLRFLHYNY
GSKEQQA*
BS05913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mpc1-PC | 107 | CG14290-PC | 1..107 | 1..107 | 574 | 100 | Plus |
Mpc1-PB | 107 | CG14290-PB | 1..107 | 1..107 | 574 | 100 | Plus |