Clone BS05913 Report

Search the DGRC for BS05913

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptMpc1-RB
Protein status:BS05913.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05913.5prime Sequence

354 bp (353 high quality bases) assembled on 2005-12-03

> BS05913.5prime
GAAGTTATCAGTCGACATGTCGATCAGGAGAGCTATGTCCACAACGGCCT
CAAAGGAGTGGCGGGATTACTTTATGAGTACCCACTTCTGGGGCCCGGTG
GCCAACTGGGGTATTCCGGTGGCTGCTCTCGCCGACACACAAAAGAGTCC
CAAATTCATCTCCGGCAAAATGACATTGGCTCTGACCCTGTACTCGTGCA
TCTTTATGCGATTTGCCTACAAGGTCCAGCCCAGGAATTGGCTGCTCTTC
GCCTGCCACGCTACCAATGCCACCGCCCAATCGATCCAGGGTCTTCGCTT
CCTTCACTACAATTACGGGTCTAAGGAGCAGCAGGCGTAAAAGCTTTCTA
GACC

BS05913.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14290-PB 324 CG14290-RB 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mpc1-RC 1155 CG14290-RC 329..654 16..341 1630 100 Plus
Mpc1-RB 1058 CG14290-RB 329..654 16..341 1630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18927497..18927659 341..179 815 100 Minus
3R 32079331 3R 18928028..18928130 179..77 515 100 Minus
3R 32079331 3R 18928195..18928257 78..16 315 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:14:02 has no hits.

BS05913.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:02 Download gff for BS05913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14290-PB 1..324 17..340 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:50 Download gff for BS05913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14290-PB 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:37 Download gff for BS05913.5prime
Subject Subject Range Query Range Percent Splice Strand
Mpc1-RB 324..654 10..341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:59 Download gff for BS05913.5prime
Subject Subject Range Query Range Percent Splice Strand
Mpc1-RB 324..654 10..341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:59 Download gff for BS05913.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18927497..18927658 180..341 100 <- Minus
3R 18928028..18928128 79..179 100 <- Minus
3R 18928195..18928262 10..78 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:37 Download gff for BS05913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14753219..14753380 180..341 100 <- Minus
arm_3R 14753750..14753850 79..179 100 <- Minus
arm_3R 14753917..14753984 10..78 95   Minus

BS05913.3prime Sequence

354 bp (353 high quality bases) assembled on 2005-12-03

> BS05913.3prime
ATGGTCTAGAAAGCTTTTACGCCTGCTGCTCCTTAGACCCGTAATTGTAG
TGAAGGAAGCGAAGACCCTGGATCGATTGGGCGGTGGCATTGGTAGCGTG
GCAGGCGAAGAGCAGCCAATTCCTGGGCTGGACCTTGTAGGCAAATCGCA
TAAAGATGCACGAGTACAGGGTCAGAGCCAATGTCATTTTGCCGGAGATG
AATTTGGGACTCTTTTGTGTGTCGGCGAGAGCAGCCACCGGAATACCCCA
GTTGGCCACCGGGCCCCAGAAGTGGGTACTCATAAAGTAATCCCGCCACT
CCTTTGAGGCCGTTGTGGACATAGCTCTCCTGATCGACATGTCGACTGAT
AACT

BS05913.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14290-PB 324 CG14290-RB 1..324 340..17 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mpc1-RC 1155 CG14290-RC 329..654 341..16 1630 100 Minus
Mpc1-RB 1058 CG14290-RB 329..654 341..16 1630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18927497..18927659 16..178 815 100 Plus
3R 32079331 3R 18928028..18928130 178..280 515 100 Plus
3R 32079331 3R 18928195..18928257 279..341 315 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:08:58 has no hits.

BS05913.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:01 Download gff for BS05913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14290-PB 1..324 17..340 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:49 Download gff for BS05913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14290-PB 1..324 17..340 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:52 Download gff for BS05913.3prime
Subject Subject Range Query Range Percent Splice Strand
Mpc1-RB 324..654 16..347 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:36 Download gff for BS05913.3prime
Subject Subject Range Query Range Percent Splice Strand
Mpc1-RB 324..654 16..347 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:36 Download gff for BS05913.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18928195..18928262 279..347 95   Plus
3R 18927497..18927658 16..177 100 <- Plus
3R 18928028..18928128 178..278 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:52 Download gff for BS05913.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14753219..14753380 16..177 100 <- Plus
arm_3R 14753750..14753850 178..278 100 <- Plus
arm_3R 14753917..14753984 279..347 95   Plus

BS05913.complete Sequence

356 bp (356 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635295

> BS05913.complete
GAAGTTATCAGTCGACATGTCGATCAGGAGAGCTATGTCCACAACGGCCT
CAAAGGAGTGGCGGGATTACTTTATGAGTACCCACTTCTGGGGCCCGGTG
GCCAACTGGGGTATTCCGGTGGCTGCTCTCGCCGACACACAAAAGAGTCC
CAAATTCATCTCCGGCAAAATGACATTGGCTCTGACCCTGTACTCGTGCA
TCTTTATGCGATTTGCCTACAAGGTCCAGCCCAGGAATTGGCTGCTCTTC
GCCTGCCACGCTACCAATGCCACCGCCCAATCGATCCAGGGTCTTCGCTT
CCTTCACTACAATTACGGGTCTAAGGAGCAGCAGGCGTAAAAGCTTTCTA
GACCAT

BS05913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mpc1-RC 324 CG14290-PC 1..324 17..340 1620 100 Plus
Mpc1-RB 324 CG14290-PB 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Mpc1-RC 1155 CG14290-RC 329..654 16..341 1630 100 Plus
Mpc1-RB 1058 CG14290-RB 329..654 16..341 1630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18927497..18927659 341..179 815 100 Minus
3R 32079331 3R 18928028..18928130 179..77 515 100 Minus
3R 32079331 3R 18928195..18928257 78..16 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:57:10 has no hits.

BS05913.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:37 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14290-RB 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:59 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14290-RB 339..669 10..341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:22 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
Mpc1-RB 330..651 17..338 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:37 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
CG14290-RB 339..669 10..341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:41 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
Mpc1-RB 330..651 17..338 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:41 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18928028..18928128 79..179 100 <- Minus
3R 18928195..18928256 17..78 100   Minus
3R 18927500..18927658 180..338 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:22 Download gff for BS05913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14753750..14753850 79..179 100 <- Minus
arm_3R 14753917..14753978 17..78 100   Minus
arm_3R 14753222..14753380 180..338 100 <- Minus

BS05913.pep Sequence

Translation from 16 to 339

> BS05913.pep
MSIRRAMSTTASKEWRDYFMSTHFWGPVANWGIPVAALADTQKSPKFISG
KMTLALTLYSCIFMRFAYKVQPRNWLLFACHATNATAQSIQGLRFLHYNY
GSKEQQA*

BS05913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mpc1-PC 107 CG14290-PC 1..107 1..107 574 100 Plus
Mpc1-PB 107 CG14290-PB 1..107 1..107 574 100 Plus