Clone Sequence Records
BS05914.3prime Sequence
753 bp (725 high quality bases) assembled on 2005-12-03
> BS05914.3prime
ATGGTCTAGAAAGCTTTCAGTAGAAGTCCGAGCTTTTGTCTTCGAGATCG
GCAAGCATCTTGTCCCTGATCTGCGGCCGTGGATCCTCCGTGATCTCGGT
GGGCACTGCTCCCGCCTGACCCAGCATAAACTCCAGCTCCTCAGCGGTCA
ACTTGTCGCCGCGCAGCTCCAGTGGGCCTATGTACTGCTTGCGCAGCGCA
CCCTCGTGGTAGATAAAGATGGTGGGCAGGTTCTTCTCGGGGAAGTTTGG
TATGCAGGTGGTGGCAACGGAGCGCACGAACTTGGTCTGTGGAAAGCGGA
CGGCCAGCTGCTGCATGTGATGGTGGATCAGTGCGCACAGCGGTACGCCG
TTGGCATACAGGTGGAGTACCACCCAGATGCCCTCGCCGGCCTTGGTTAC
CTCGTTGACATAATCCTGTCCTGAGATCTCGCGCACTGATCCAAATCGCG
CCTTTTCAGCGGTGGCCCTCATCTCGGCGATGCGTCGCTGGCGATACTGC
TCTAGAACAGCCTCGTCCTCGGAATCCTCCAGTTCGTCGAGTTCGTCCAG
CGACATGTCGTCGATCTTCTTGTCGCGCTGGCCTTCATTCAGTGGCAGAT
CTGTGCGCCGCTGGATGGCATCGTCCATCAGCTTCTGGATCTGATCCTCT
GTGATCTCCGCCTCCTTCGCCTTGGGCCCAATTATTCCCTTGGCTCGGAG
CACATCATTCCACTCGGTATCTTCGTTTGGGTCCTGCATGTCGACTGATA
ACT
BS05914.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18593-PA | 723 | viaf-RA | 1..723 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 1158 | CG18593-RA | 134..858 | 741..17 | 3625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11992153..11992871 | 17..735 | 3595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:18:47 has no hits.
BS05914.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:04 Download gff for
BS05914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:52 Download gff for
BS05914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18593-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:50 Download gff for
BS05914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..858 | 17..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:05 Download gff for
BS05914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..858 | 17..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:05 Download gff for
BS05914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11992153..11992876 | 17..742 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:50 Download gff for
BS05914.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11985253..11985976 | 17..742 | 99 | <- | Plus |
BS05914.5prime Sequence
753 bp (713 high quality bases) assembled on 2005-12-03
> BS05914.5prime
GAAGTTATCAGTCGACATGCAGGACCCAAACGAAGATACCGAGTGGAATG
ATGTGCTCCGAGCCAAGGGAATAATTGGGCCCAAGGCGAAGGAGGCGGAG
ATCACAGAGGATCAGATCCAGAAGCTGATGGACGATGCCATCCAGCGGCG
CACAGATCTGCCACTGAATGAAGGCCAGCGCGACAAGAAGATCGACGACA
TGTCGCTGGACGAACTCGACGAACTGGAGGATTCCGAGGACGAGGCTGTT
CTAGAGCAGTATCGCCAGCGACGCATCGCCGAGATGAGGGCCACCGCTGA
AAAGGCGCGATTTGGATCAGTGCGCGAGATCTCAGGACAGGATTATGTCA
ACGAGGTAACCAAGGCCGGCGAGGGCATCTGGGTGGTACTCCACCTGTAT
GCCAACGGCGTACCGCTGTGCGCACTGATCCACCATCACATGCAGCAGCT
GGCCGTCCGCTTTCCACAGACCAAGTTCGTGCGCTCCGTTGCCACCACCT
GCATACCAAACTTCCCCGAGAAGAACCTGCCCACCATCTTTATCTACCAC
GAGGGTGCGCTGCGCAAGCAGTACATAGGCCCACTGGAGCTGCGCGGCGA
CAAGTTGACCGCTGAGGAGCTGGAGTTTATGCTGGGTCAGGCGGGAGCAG
TGCCCACCGAGATCACGGAGGATCCACGGCCGCAGATCAGGGACAAGATG
CTTGCCGATCTCGAAGACNAAAGCTCGGACTTCTACTGAAAGCTTTCTAG
ACC
BS05914.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18593-PA | 723 | viaf-RA | 1..723 | 17..739 | 3596 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 1158 | CG18593-RA | 134..858 | 15..739 | 3614 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11992153..11992871 | 739..21 | 3584 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:43:19 has no hits.
BS05914.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:05 Download gff for
BS05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:53 Download gff for
BS05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18593-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:31 Download gff for
BS05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..858 | 7..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:03 Download gff for
BS05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..858 | 7..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:03 Download gff for
BS05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11992153..11992876 | 14..739 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:31 Download gff for
BS05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11985253..11985976 | 14..739 | 99 | <- | Minus |
BS05914.complete Sequence
755 bp (755 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635296
> BS05914.complete
GAAGTTATCAGTCGACATGCAGGACCCAAACGAAGATACCGAGTGGAATG
ATGTGCTCCGAGCCAAGGGAATAATTGGGCCCAAGGCGAAGGAGGCGGAG
ATCACAGAGGATCAGATCCAGAAGCTGATGGACGATGCCATCCAGCGGCG
CACAGATCTGCCACTGAATGAAGGCCAGCGCGACAAGAAGATCGACGACA
TGTCGCTGGACGAACTCGACGAACTGGAGGATTCCGAGGACGAGGCTGTT
CTAGAGCAGTATCGCCAGCGACGCATCGCCGAGATGAGGGCCACCGCTGA
AAAGGCGCGATTTGGATCAGTGCGCGAGATCTCAGGACAGGATTATGTCA
ACGAGGTAACCAAGGCCGGCGAGGGCATCTGGGTGGTACTCCACCTGTAT
GCCAACGGCGTACCGCTGTGCGCACTGATCCACCATCACATGCAGCAGCT
GGCCGTCCGCTTTCCACAGACCAAGTTCGTGCGCTCCGTTGCCACCACCT
GCATACCAAACTTCCCCGAGAAGAACCTGCCCACCATCTTTATCTACCAC
GAGGGTGCGCTGCGCAAGCAGTACATAGGCCCACTGGAGCTGCGCGGCGA
CAAGTTGACCGCTGAGGAGCTGGAGTTTATGCTGGGTCAGGCGGGAGCAG
TGCCCACCGAGATCACGGAGGATCCACGGCCGCAGATCAGGGACAAGATG
CTTGCCGATCTCGAAGACAAAAGCTCGGACTTCTACTGAAAGCTTTCTAG
ACCAT
BS05914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 723 | CG18593-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 1158 | CG18593-RA | 134..858 | 15..739 | 3625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11992153..11992871 | 739..21 | 3595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:44:23 has no hits.
BS05914.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:43 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:07 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 136..857 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:53 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 136..857 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:43 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..858 | 7..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:18 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 136..857 | 17..738 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:18 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11992154..11992873 | 17..738 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:53 Download gff for
BS05914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11985254..11985973 | 17..738 | 99 | | Minus |
BS05914.pep Sequence
Translation from 16 to 738
> BS05914.pep
MQDPNEDTEWNDVLRAKGIIGPKAKEAEITEDQIQKLMDDAIQRRTDLPL
NEGQRDKKIDDMSLDELDELEDSEDEAVLEQYRQRRIAEMRATAEKARFG
SVREISGQDYVNEVTKAGEGIWVVLHLYANGVPLCALIHHHMQQLAVRFP
QTKFVRSVATTCIPNFPEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAE
ELEFMLGQAGAVPTEITEDPRPQIRDKMLADLEDKSSDFY*
BS05914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-PA | 240 | CG18593-PA | 1..240 | 1..240 | 1243 | 100 | Plus |
| CG7650-PA | 276 | CG7650-PA | 117..269 | 65..212 | 152 | 26.8 | Plus |
