Clone Sequence Records
BS05915.5prime Sequence
333 bp (332 high quality bases) assembled on 2005-12-03
> BS05915.5prime
GAAGTTATCAGTCGACATGTCTTTCGCTCAGTTCTTTGTCGCCTGCTGCC
TGGCCATCGTCCTCCTGGCCGTGTCCAACACACGGGCCGCAGTTCAGGGT
CCACCTCTATGCCAGTCTGGCATCGTCGAGGAGATGCCGCCGCACATCCG
GAAGGTGTGCCAGGCCCTGGAGAACTCCGATCAACTGACGTCGGCGCTGA
AGTCCTACATCAACAACGAGGCATCCGCTTTGGTGGCCAACTCTGATGAC
CTGTTGAAGAACTACAACAAGCGAACGGATGTCGATCACGTCTTCCTGCG
TTTCGGAAAACGTCGTTAAAAGCTTTCTAGACC
BS05915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6440-PA | 303 | Dms-RA | 1..303 | 17..319 | 1490 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..417 | 16..319 | 1505 | 99.7 | Plus |
Ms-RC | 1065 | CG6440-RC | 131..434 | 16..319 | 1505 | 99.7 | Plus |
Ms-RA | 925 | CG6440-RA | 131..434 | 16..319 | 1505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 16..227 | 1045 | 99.5 | Plus |
3R | 32079331 | 3R | 24343102..24343194 | 227..319 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:14:23 has no hits.
BS05915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:07 Download gff for
BS05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-PA | 1..303 | 17..319 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:56 Download gff for
BS05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6440-PA | 1..303 | 17..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:04 Download gff for
BS05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 8..326 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:10 Download gff for
BS05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 8..326 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:10 Download gff for
BS05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24343103..24343201 | 228..326 | 96 | | Plus |
3R | 24342828..24343039 | 16..227 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:04 Download gff for
BS05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168550..20168761 | 16..227 | 99 | -> | Plus |
arm_3R | 20168825..20168923 | 228..326 | 96 | | Plus |
BS05915.3prime Sequence
333 bp (332 high quality bases) assembled on 2005-12-03
> BS05915.3prime
ATGGTCTAGAAAGCTTTTAACGACGTTTTCCGAAACGCAGGAAGACGTGA
TCGACATCCGTTCGCTTGTTGTAGTTCTTCAACAGGTCATCAGAGTTGGC
CACCAAAGCGGATGCCTCGTTGTTGATGTAGGACTTCAGCGCCGACGTCA
GTTGATCGGAGTTCTCCAGGGCCTGGCACACCTTCCGGATGTGCGGCGGC
ATCTCCTCGACGATGCCAGACTGGCATAGAGGTGGACCCTGAACTGCGGC
CCGTGTGTTGGACACGGCCAGGAGGACGATGGCCAGGCAGCAGGCGACAA
AGAACTGAGCGAAAGACATGTCGACTGATAACT
BS05915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6440-PA | 303 | Dms-RA | 1..303 | 319..17 | 1490 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..417 | 320..17 | 1505 | 99.7 | Minus |
Ms-RC | 1065 | CG6440-RC | 131..434 | 320..17 | 1505 | 99.7 | Minus |
Ms-RA | 925 | CG6440-RA | 131..434 | 320..17 | 1505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 320..109 | 1045 | 99.5 | Minus |
3R | 32079331 | 3R | 24343102..24343194 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:18:21 has no hits.
BS05915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:06 Download gff for
BS05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-PA | 1..303 | 17..319 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:54 Download gff for
BS05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6440-PA | 1..303 | 17..319 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:49 Download gff for
BS05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 10..328 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:02 Download gff for
BS05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 10..328 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:02 Download gff for
BS05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24342828..24343039 | 109..320 | 99 | -> | Minus |
3R | 24343103..24343201 | 10..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:49 Download gff for
BS05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168550..20168761 | 109..320 | 99 | -> | Minus |
arm_3R | 20168825..20168923 | 10..108 | 96 | | Minus |
BS05915.complete Sequence
335 bp assembled on 2008-08-15
GenBank Submission: FJ635297
> BS05915.complete
GAAGTTATCAGTCGACATGTCTTTCGCTCAGTTCTTTGTCGCCTGCTGCC
TGGCCATCGTCCTCCTGGCCGTGTCCAACACACGGGCCGCAGTTCAGGGT
CCACCTCTATGCCAGTCTGGCATCGTCGAGGAGATGCCGCCGCACATCCG
GAAGGTGTGCCAGGCCCTGGAGAACTCCGATCAACTGACGTCGGCGCTGA
AGTCCTACATCAACAACGAGGCATCCGCTTTGGTGGCCAACTCTGATGAC
CTGTTGAAGAACTACAACAAGCGAACGGATGTCGATCACGTCTTCCTGCG
TTTCGGAAAACGTCGTTAAAAGCTTTCTAGACCAT
BS05915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 303 | CG6440-PB | 1..303 | 17..319 | 1500 | 99.7 | Plus |
Ms-RC | 303 | CG6440-PC | 1..303 | 17..319 | 1500 | 99.7 | Plus |
Ms-RA | 303 | CG6440-PA | 1..303 | 17..319 | 1500 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..417 | 16..319 | 1505 | 99.7 | Plus |
Ms-RC | 1065 | CG6440-RC | 131..434 | 16..319 | 1505 | 99.7 | Plus |
Ms-RA | 925 | CG6440-RA | 131..434 | 16..319 | 1505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 16..227 | 1045 | 99.5 | Plus |
3R | 32079331 | 3R | 24343102..24343194 | 227..319 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:23 has no hits.
BS05915.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:13 Download gff for
BS05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-RA | 122..439 | 8..326 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:44 Download gff for
BS05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 132..432 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:05 Download gff for
BS05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-RA | 130..430 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:00 Download gff for
BS05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 132..432 | 17..317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:00 Download gff for
BS05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24342829..24343039 | 17..227 | 99 | -> | Plus |
3R | 24343103..24343192 | 228..317 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:44 Download gff for
BS05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168551..20168761 | 17..227 | 99 | -> | Plus |
arm_3R | 20168825..20168914 | 228..317 | 100 | | Plus |
BS05915.pep Sequence
Translation from 16 to 318
> BS05915.pep
MSFAQFFVACCLAIVLLAVSNTRAAVQGPPLCQSGIVEEMPPHIRKVCQA
LENSDQLTSALKSYINNEASALVANSDDLLKNYNKRTDVDHVFLRFGKRR
*
BS05915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-PB | 100 | CG6440-PB | 1..100 | 1..100 | 511 | 100 | Plus |
Ms-PC | 100 | CG6440-PC | 1..100 | 1..100 | 511 | 100 | Plus |
Ms-PA | 100 | CG6440-PA | 1..100 | 1..100 | 511 | 100 | Plus |