Clone Sequence Records
BS05916.3prime Sequence
792 bp (789 high quality bases) assembled on 2005-12-03
> BS05916.3prime
ATGGTCTAGAAAGCTTTTAGGCTGCCTGCTTGCTTCTCTTCTTCTCGCAC
TCCTCGGGCACGGCTTTGCCGGAGGTGACGCCGCCGTCCGACGCGGGTCC
CGTTTCGGAAACAGTCTCTGGAGGATGTTCAAGCACGTGGTCAATGATGC
CCAGCACTTTTGCCTCCTCGGGGGTCATGAAGTGGTCGCGCTCCATGCGT
CCGGACATCTCCTCGTACGTATTCTTGGCGTGCTTCACGTAGATGTTGGT
CAGCTGGCGCTTGATTTTGATAATTTCCTCAGCATGTATTAGGATGTCTG
TGGCTTGGCCTTGTGCGCCACCAGAGGGCTGATGTATCATTATTCGCGCG
TTGGGTAGGGAGTACCGCATGCCAGGAGCACCGGCCGCGAGCAGGAGGGA
TCCCATCGAGCAGGCCTGTCCAACGCACCAAGTTGCAATGGGTGGCTTGA
CGTACTGCATCGTATCGTAGATCGCCAAACCCGCTGTAACAACACCGCCG
GGCGAATTGATGTACAGATGGATCGGTTTGTTGACGTTCTCCGATTGCAG
GAACAGCAGTTGAGCCACCACAGTCGAACTGATGTCGTCGGTTATGTTGC
CCATAAGGCAAATTATACGCTCCTTCAGCAGACGTGAGAATATGTCGTAG
GCCCGCTCACCGCGGCCAGTTTGCTCGACCACCATGGGAATCAGGTTGAT
GTTGCGAACAGAATTCGCCCGGCCGCCACATTGTACTGAACTAATTTGTA
AAAAGCGGCTAACAGCGGTTTTCAGCATGTCGACTGATAACT
BS05916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-PA | 762 | CG5045-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 1175 | CG5045-RB | 120..883 | 779..16 | 3820 | 100 | Minus |
CG5045-RA | 973 | CG5045-RA | 120..883 | 779..16 | 3820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10357010..10357436 | 736..310 | 2135 | 100 | Minus |
2L | 23513712 | 2L | 10357485..10357786 | 317..16 | 1480 | 99.3 | Minus |
2L | 23513712 | 2L | 10356914..10356959 | 779..734 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:41:57 has no hits.
BS05916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:08 Download gff for
BS05916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:57 Download gff for
BS05916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:48:18 Download gff for
BS05916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:54 Download gff for
BS05916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:54 Download gff for
BS05916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10356908..10356956 | 737..786 | 94 | -> | Minus |
2L | 10357010..10357435 | 311..736 | 100 | -> | Minus |
2L | 10357492..10357790 | 9..310 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:18 Download gff for
BS05916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10356908..10356956 | 737..786 | 94 | -> | Minus |
arm_2L | 10357010..10357435 | 311..736 | 100 | -> | Minus |
arm_2L | 10357492..10357790 | 9..310 | 99 | | Minus |
BS05916.5prime Sequence
792 bp (687 high quality bases) assembled on 2005-12-03
> BS05916.5prime
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCTAAAAGCTTTCTAGACC
BS05916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-PA | 762 | CG5045-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 1175 | CG5045-RB | 120..883 | 16..779 | 3820 | 100 | Plus |
CG5045-RA | 973 | CG5045-RA | 120..883 | 16..779 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10357010..10357436 | 59..485 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 10357485..10357786 | 478..779 | 1480 | 99.3 | Plus |
2L | 23513712 | 2L | 10356914..10356959 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:43 has no hits.
BS05916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:09 Download gff for
BS05916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:59 Download gff for
BS05916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:19 Download gff for
BS05916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:59 Download gff for
BS05916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:59 Download gff for
BS05916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10357492..10357790 | 485..786 | 99 | | Plus |
2L | 10356908..10356956 | 9..58 | 94 | -> | Plus |
2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:19 Download gff for
BS05916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10356908..10356956 | 9..58 | 94 | -> | Plus |
arm_2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
arm_2L | 10357492..10357790 | 485..786 | 99 | | Plus |
BS05916.complete Sequence
794 bp (794 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635298
> BS05916.complete
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCTAAAAGCTTTCTAGACCAT
BS05916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 762 | CG5045-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG5045-RA | 762 | CG5045-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 1175 | CG5045-RB | 120..883 | 16..779 | 3820 | 100 | Plus |
CG5045-RA | 973 | CG5045-RA | 120..883 | 16..779 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10357010..10357436 | 59..485 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 10357485..10357786 | 478..779 | 1480 | 99.3 | Plus |
2L | 23513712 | 2L | 10356914..10356959 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:59:35 has no hits.
BS05916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:44 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:56 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 166..939 | 9..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:14 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 121..880 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:44 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 166..939 | 9..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:30 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 121..880 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:30 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10356915..10356956 | 17..58 | 100 | -> | Plus |
2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
2L | 10357492..10357783 | 485..776 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:14 Download gff for
BS05916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10356915..10356956 | 17..58 | 100 | -> | Plus |
arm_2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
arm_2L | 10357492..10357783 | 485..776 | 100 | | Plus |
BS05916.pep Sequence
Translation from 16 to 777
> BS05916.pep
MLKTAVSRFLQISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRL
LKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAG
LAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQ
PSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHF
MTPEEAKVLGIIDHVLEHPPETVSETGPASDGGVTSGKAVPEECEKKRSK
QAA*
BS05916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-PB | 253 | CG5045-PB | 1..253 | 1..253 | 1297 | 100 | Plus |
CG5045-PA | 253 | CG5045-PA | 1..253 | 1..253 | 1297 | 100 | Plus |