Clone BS05916 Report

Search the DGRC for BS05916

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG5045-RA
Protein status:BS05916.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05916.3prime Sequence

792 bp (789 high quality bases) assembled on 2005-12-03

> BS05916.3prime
ATGGTCTAGAAAGCTTTTAGGCTGCCTGCTTGCTTCTCTTCTTCTCGCAC
TCCTCGGGCACGGCTTTGCCGGAGGTGACGCCGCCGTCCGACGCGGGTCC
CGTTTCGGAAACAGTCTCTGGAGGATGTTCAAGCACGTGGTCAATGATGC
CCAGCACTTTTGCCTCCTCGGGGGTCATGAAGTGGTCGCGCTCCATGCGT
CCGGACATCTCCTCGTACGTATTCTTGGCGTGCTTCACGTAGATGTTGGT
CAGCTGGCGCTTGATTTTGATAATTTCCTCAGCATGTATTAGGATGTCTG
TGGCTTGGCCTTGTGCGCCACCAGAGGGCTGATGTATCATTATTCGCGCG
TTGGGTAGGGAGTACCGCATGCCAGGAGCACCGGCCGCGAGCAGGAGGGA
TCCCATCGAGCAGGCCTGTCCAACGCACCAAGTTGCAATGGGTGGCTTGA
CGTACTGCATCGTATCGTAGATCGCCAAACCCGCTGTAACAACACCGCCG
GGCGAATTGATGTACAGATGGATCGGTTTGTTGACGTTCTCCGATTGCAG
GAACAGCAGTTGAGCCACCACAGTCGAACTGATGTCGTCGGTTATGTTGC
CCATAAGGCAAATTATACGCTCCTTCAGCAGACGTGAGAATATGTCGTAG
GCCCGCTCACCGCGGCCAGTTTGCTCGACCACCATGGGAATCAGGTTGAT
GTTGCGAACAGAATTCGCCCGGCCGCCACATTGTACTGAACTAATTTGTA
AAAAGCGGCTAACAGCGGTTTTCAGCATGTCGACTGATAACT

BS05916.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PA 762 CG5045-RA 1..762 778..17 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 1175 CG5045-RB 120..883 779..16 3820 100 Minus
CG5045-RA 973 CG5045-RA 120..883 779..16 3820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 736..310 2135 100 Minus
2L 23513712 2L 10357485..10357786 317..16 1480 99.3 Minus
2L 23513712 2L 10356914..10356959 779..734 230 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:41:57 has no hits.

BS05916.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:08 Download gff for BS05916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:57 Download gff for BS05916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:48:18 Download gff for BS05916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:54 Download gff for BS05916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:54 Download gff for BS05916.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10356908..10356956 737..786 94 -> Minus
2L 10357010..10357435 311..736 100 -> Minus
2L 10357492..10357790 9..310 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:18 Download gff for BS05916.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356908..10356956 737..786 94 -> Minus
arm_2L 10357010..10357435 311..736 100 -> Minus
arm_2L 10357492..10357790 9..310 99   Minus

BS05916.5prime Sequence

792 bp (687 high quality bases) assembled on 2005-12-03

> BS05916.5prime
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCTAAAAGCTTTCTAGACC

BS05916.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PA 762 CG5045-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 1175 CG5045-RB 120..883 16..779 3820 100 Plus
CG5045-RA 973 CG5045-RA 120..883 16..779 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 59..485 2135 100 Plus
2L 23513712 2L 10357485..10357786 478..779 1480 99.3 Plus
2L 23513712 2L 10356914..10356959 16..61 230 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:36:43 has no hits.

BS05916.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:09 Download gff for BS05916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:59:59 Download gff for BS05916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:19 Download gff for BS05916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:59 Download gff for BS05916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:59 Download gff for BS05916.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10357492..10357790 485..786 99   Plus
2L 10356908..10356956 9..58 94 -> Plus
2L 10357010..10357435 59..484 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:19 Download gff for BS05916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356908..10356956 9..58 94 -> Plus
arm_2L 10357010..10357435 59..484 100 -> Plus
arm_2L 10357492..10357790 485..786 99   Plus

BS05916.complete Sequence

794 bp (794 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635298

> BS05916.complete
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCTAAAAGCTTTCTAGACCAT

BS05916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 762 CG5045-PB 1..762 17..778 3810 100 Plus
CG5045-RA 762 CG5045-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 1175 CG5045-RB 120..883 16..779 3820 100 Plus
CG5045-RA 973 CG5045-RA 120..883 16..779 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 59..485 2135 100 Plus
2L 23513712 2L 10357485..10357786 478..779 1480 99.3 Plus
2L 23513712 2L 10356914..10356959 16..61 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:59:35 has no hits.

BS05916.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:44 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:56 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 166..939 9..786 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:14 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 121..880 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:44 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 166..939 9..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:30 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 121..880 17..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:30 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10356915..10356956 17..58 100 -> Plus
2L 10357010..10357435 59..484 100 -> Plus
2L 10357492..10357783 485..776 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:14 Download gff for BS05916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356915..10356956 17..58 100 -> Plus
arm_2L 10357010..10357435 59..484 100 -> Plus
arm_2L 10357492..10357783 485..776 100   Plus

BS05916.pep Sequence

Translation from 16 to 777

> BS05916.pep
MLKTAVSRFLQISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRL
LKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAG
LAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQ
PSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHF
MTPEEAKVLGIIDHVLEHPPETVSETGPASDGGVTSGKAVPEECEKKRSK
QAA*

BS05916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PB 253 CG5045-PB 1..253 1..253 1297 100 Plus
CG5045-PA 253 CG5045-PA 1..253 1..253 1297 100 Plus