Clone BS05918 Report

Search the DGRC for BS05918

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptMip-RA
Protein status:BS05918.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05918.5prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-03

> BS05918.5prime
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACT
AAAAGCTTTCTAGACC

BS05918.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6456-PA 636 Mip-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1396 CG6456-RA 290..925 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17345418..17346053 652..17 3180 100 Minus
Blast to na_te.dros performed 2015-02-04 02:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 331..408 131 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 367..408 128 83.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 376..409 125 85.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 376..414 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 377..414 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 376..409 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 377..408 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 377..415 114 76.9 Plus
roo 9092 roo DM_ROO 9092bp 1081..1119 376..414 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 376..408 111 81.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 376..408 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1078..1119 367..408 110 79.1 Plus
roo 9092 roo DM_ROO 9092bp 1110..1147 378..415 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2978 380..415 108 77.8 Plus
roo 9092 roo DM_ROO 9092bp 1106..1162 361..419 108 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2630..2663 376..409 107 79.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6837 370..408 107 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6573 377..417 106 73.2 Plus

BS05918.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:14 Download gff for BS05918.5prime
Subject Subject Range Query Range Percent Splice Strand
Mip-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:05 Download gff for BS05918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6456-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:55:36 Download gff for BS05918.5prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 6..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:29 Download gff for BS05918.5prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 6..657 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:29 Download gff for BS05918.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17345415..17346058 9..657 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:55:36 Download gff for BS05918.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338515..17339158 9..657 98   Minus

BS05918.3prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-03

> BS05918.3prime
ATGGTCTAGAAAGCTTTTAGTTGCTGGGCAACTGGGAGCGCTTGCCCCAG
CCGCCGTGGAGCTTCTGCCACTGGTCGCGTTTGCCCCACATGCCCTTCAG
GTTGTTCCATGTGGGTTCGCGCTTACCCCAGGCGCCCCTGAACTTGTTCC
AGCCCTGCGCCTGCCTCCTCTTTCCCCAAGCGACGTTCATGCTCTTCCAG
GCCCGCTTTTCCACATCCGGCTCGCCTGCGAGATCATCGAAATCCTCGCC
AGATTGCGATTGCTGCTGGAGCGGCTGTTGCTGCTGCTGCTGTGCGGATT
GTCCACTGGCCAGCCGCTCGAAGGTGTCCCAATCGATGGTGTTCGTGCCA
TCCGTGATTACCAGCGGAACAAAGTGGCCGGTCATGTAGATGTCCGGATC
GCTGACGTCTCCGCTGGAGGACCGCTTGCCCCACGAGCTCTGCAGCGACT
GCCAGGCGCGCTTATTGTTGCCGTACAGGTCGCTCTCGCTAAGTTGGTCC
AGTACCACCTGTTCGGACAGGCCTCCGCCTCCTGGTTCATTAGAGGGTGG
ACTGCCAGCACTACCACTGGCCACCAAATTACCGCAAGCGCTGCCCAGGA
TGAGGAGCACCATCAGAAAGCCGTAAGTTCTCCGCGTCTTAGTGTGAGCC
ATGTCGACTGATAACT

BS05918.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6456-PA 636 Mip-RA 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1396 CG6456-RA 290..925 652..17 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17345418..17346053 17..652 3180 100 Plus
Blast to na_te.dros performed 2015-02-01 08:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 338..261 131 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 302..261 128 83.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 293..260 125 85.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 293..255 123 79.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 293..261 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 293..261 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 293..261 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 292..255 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 293..260 116 82.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 292..261 115 84.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 292..254 114 76.9 Minus
roo 9092 roo DM_ROO 9092bp 1081..1119 293..255 114 76.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 293..261 111 81.8 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 293..261 111 81.8 Minus
roo 9092 roo DM_ROO 9092bp 1078..1119 302..261 110 79.1 Minus
roo 9092 roo DM_ROO 9092bp 1110..1147 291..254 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2978 289..254 108 77.8 Minus
roo 9092 roo DM_ROO 9092bp 1106..1162 308..250 108 73.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2630..2663 293..260 107 79.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6837 299..261 107 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6573 292..252 106 73.2 Minus

BS05918.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:12 Download gff for BS05918.3prime
Subject Subject Range Query Range Percent Splice Strand
Mip-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:03 Download gff for BS05918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6456-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:55 Download gff for BS05918.3prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 12..663 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:28 Download gff for BS05918.3prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 12..663 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:28 Download gff for BS05918.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17345415..17346058 12..660 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:55 Download gff for BS05918.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338515..17339158 12..660 98   Plus

BS05918.complete Sequence

668 bp (668 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635299

> BS05918.complete
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACT
AAAAGCTTTCTAGACCAT

BS05918.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 636 CG6456-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1396 CG6456-RA 290..925 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17345418..17346053 652..17 3180 100 Minus
Blast to na_te.dros performed 2014-11-27 08:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 331..408 131 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 367..408 128 83.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 376..409 125 85.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 376..414 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 377..414 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 376..409 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 377..408 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 377..415 114 76.9 Plus
roo 9092 roo DM_ROO 9092bp 1081..1119 376..414 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 376..408 111 81.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 376..408 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1078..1119 367..408 110 79.1 Plus
roo 9092 roo DM_ROO 9092bp 1110..1147 378..415 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2978 380..415 108 77.8 Plus
roo 9092 roo DM_ROO 9092bp 1106..1162 361..419 108 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2630..2663 376..409 107 79.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6837 370..408 107 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6573 377..417 106 73.2 Plus

BS05918.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:20:47 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:58 Download gff for BS05918.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 275..924 6..657 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:28 Download gff for BS05918.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 290..923 17..650 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:47 Download gff for BS05918.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 275..924 6..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:06 Download gff for BS05918.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 290..923 17..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:06 Download gff for BS05918.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17345420..17346053 17..650 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:28 Download gff for BS05918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338520..17339153 17..650 100   Minus

BS05918.pep Sequence

Translation from 16 to 651

> BS05918.pep
MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV
LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT
DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR
AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG
GWGKRSQLPSN*

BS05918.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-PA 211 CG6456-PA 1..211 1..211 1148 100 Plus