Clone Sequence Records
BS05918.5prime Sequence
666 bp (665 high quality bases) assembled on 2005-12-03
> BS05918.5prime
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACT
AAAAGCTTTCTAGACC
BS05918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6456-PA | 636 | Mip-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 1396 | CG6456-RA | 290..925 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17345418..17346053 | 652..17 | 3180 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 02:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 331..408 | 131 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 367..408 | 128 | 83.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 376..409 | 125 | 85.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 376..414 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 377..414 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 376..409 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 377..408 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 377..415 | 114 | 76.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 376..414 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 376..408 | 111 | 81.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 376..408 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 367..408 | 110 | 79.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 378..415 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 380..415 | 108 | 77.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 361..419 | 108 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 376..409 | 107 | 79.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 370..408 | 107 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 377..417 | 106 | 73.2 | Plus |
BS05918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:14 Download gff for
BS05918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:05 Download gff for
BS05918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6456-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:55:36 Download gff for
BS05918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 6..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:29 Download gff for
BS05918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 6..657 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:29 Download gff for
BS05918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17345415..17346058 | 9..657 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:55:36 Download gff for
BS05918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17338515..17339158 | 9..657 | 98 | | Minus |
BS05918.3prime Sequence
666 bp (665 high quality bases) assembled on 2005-12-03
> BS05918.3prime
ATGGTCTAGAAAGCTTTTAGTTGCTGGGCAACTGGGAGCGCTTGCCCCAG
CCGCCGTGGAGCTTCTGCCACTGGTCGCGTTTGCCCCACATGCCCTTCAG
GTTGTTCCATGTGGGTTCGCGCTTACCCCAGGCGCCCCTGAACTTGTTCC
AGCCCTGCGCCTGCCTCCTCTTTCCCCAAGCGACGTTCATGCTCTTCCAG
GCCCGCTTTTCCACATCCGGCTCGCCTGCGAGATCATCGAAATCCTCGCC
AGATTGCGATTGCTGCTGGAGCGGCTGTTGCTGCTGCTGCTGTGCGGATT
GTCCACTGGCCAGCCGCTCGAAGGTGTCCCAATCGATGGTGTTCGTGCCA
TCCGTGATTACCAGCGGAACAAAGTGGCCGGTCATGTAGATGTCCGGATC
GCTGACGTCTCCGCTGGAGGACCGCTTGCCCCACGAGCTCTGCAGCGACT
GCCAGGCGCGCTTATTGTTGCCGTACAGGTCGCTCTCGCTAAGTTGGTCC
AGTACCACCTGTTCGGACAGGCCTCCGCCTCCTGGTTCATTAGAGGGTGG
ACTGCCAGCACTACCACTGGCCACCAAATTACCGCAAGCGCTGCCCAGGA
TGAGGAGCACCATCAGAAAGCCGTAAGTTCTCCGCGTCTTAGTGTGAGCC
ATGTCGACTGATAACT
BS05918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6456-PA | 636 | Mip-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 1396 | CG6456-RA | 290..925 | 652..17 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17345418..17346053 | 17..652 | 3180 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 08:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 338..261 | 131 | 68.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 302..261 | 128 | 83.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 293..260 | 125 | 85.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 293..255 | 123 | 79.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 293..261 | 120 | 84.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 293..261 | 120 | 84.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 293..261 | 120 | 84.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 292..255 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 293..260 | 116 | 82.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 292..261 | 115 | 84.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 292..254 | 114 | 76.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 293..255 | 114 | 76.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 293..261 | 111 | 81.8 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 293..261 | 111 | 81.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 302..261 | 110 | 79.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 291..254 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 289..254 | 108 | 77.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 308..250 | 108 | 73.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 293..260 | 107 | 79.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 299..261 | 107 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 292..252 | 106 | 73.2 | Minus |
BS05918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:12 Download gff for
BS05918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:03 Download gff for
BS05918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6456-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:55 Download gff for
BS05918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 12..663 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:28 Download gff for
BS05918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 12..663 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:28 Download gff for
BS05918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17345415..17346058 | 12..660 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:55 Download gff for
BS05918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17338515..17339158 | 12..660 | 98 | | Plus |
BS05918.complete Sequence
668 bp (668 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635299
> BS05918.complete
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACT
AAAAGCTTTCTAGACCAT
BS05918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 636 | CG6456-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 1396 | CG6456-RA | 290..925 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17345418..17346053 | 652..17 | 3180 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 331..408 | 131 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 367..408 | 128 | 83.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 376..409 | 125 | 85.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 376..414 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 377..414 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 376..409 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 377..408 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 377..415 | 114 | 76.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 376..414 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 376..408 | 111 | 81.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 376..408 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 367..408 | 110 | 79.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 378..415 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 380..415 | 108 | 77.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 361..419 | 108 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 376..409 | 107 | 79.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 370..408 | 107 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 377..417 | 106 | 73.2 | Plus |
BS05918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:20:47 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:58 Download gff for
BS05918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 275..924 | 6..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:28 Download gff for
BS05918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 290..923 | 17..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:47 Download gff for
BS05918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 275..924 | 6..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:06 Download gff for
BS05918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 290..923 | 17..650 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:06 Download gff for
BS05918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17345420..17346053 | 17..650 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:28 Download gff for
BS05918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17338520..17339153 | 17..650 | 100 | | Minus |
BS05918.pep Sequence
Translation from 16 to 651
> BS05918.pep
MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV
LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT
DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR
AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG
GWGKRSQLPSN*
BS05918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-PA | 211 | CG6456-PA | 1..211 | 1..211 | 1148 | 100 | Plus |