Clone BS05922 Report

Search the DGRC for BS05922

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG11236-RA
Protein status:BS05922.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05922.3prime Sequence

888 bp (764 high quality bases) assembled on 2005-12-03

> BS05922.3prime
ATGGTCTAGAAAGCTTTTATAATTTGGAACCGTTCTTGGCGGCCAACAGG
ATATTGAGGACATCGTCGGCACAGCCCCAGCACAAAGTGACTCCACTGCC
GCCATGTCCATAGTTGTGGATGAGGAGCTTGCGGCCGCGGCGCTCGGCTT
CCAGTCGGAGTTGGGTGCGACCCGGCCGGAGACCTACCCAATCAAAGAGG
CACTCCGTGTGCTCCAAACCAGGAATGTACCGCTGACAGCCATCGACGAT
CATCCGCCTGTCGTTCTGGCAGACTTTAGTGTTGTAGTCCCGCTCCTGAT
GGGTTCCGCCCAGGACAACACTTTCGGTGTTGGGTATAATATAGTTGCCA
TCATCACTCTCGTCCAGCACGGCAGAGAAAATCCAGTTGGCCCTCACCCG
GGAAACTTGGCCACGCACTGCGTACATTTGATCGTCGTTTAGTAGGGTCT
TAGAGCCCAATCCGGAGCAATTGACTATCACATCGTACTCGGAATCGGCT
ACAAATGCATCCAGGTCTGTAATCCTTTTCCGGACAACAACACCTCCATT
TCGGGTGAAACGCTTCATCAAATACGGCAGTAGCTTAATGGGCTCCGAGG
TGTAGGTAACAAAGGATAAACCAGACGTGAACTTAACGCTGCGACCTTTA
TTGTAGGCAGCCAGCTGTTCCTTGGACAGATCCACTGCTCCATAGACAAT
GTCACGCCAAAAATCTTCGACCGTGTCCACCGTTGAGGTGCTCAGCCGAA
TGCAGGGTAGCAGACAAACGCCAGCCTCTCCGGCATCCTCGCTCAGCCAG
ATCTTCTCCAAAAATTGGTGCATGCTCTTCGACCACTTGTAGACTTTCGC
CTGCGAAGTGCCGCCCAGAAGGTACGGACCCCAGAGAA

BS05922.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-PA 1026 CG11236-RA 156..1026 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-RA 1181 CG11236-RA 197..1067 887..17 4355 100 Minus
CG11236-RB 1172 CG11236-RB 197..1058 887..17 4210 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6803946..6804258 329..17 1565 100 Minus
2L 23513712 2L 6803592..6803888 626..330 1485 100 Minus
2L 23513712 2L 6803310..6803524 839..625 1075 100 Minus
2L 23513712 2L 6803207..6803254 887..840 240 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:57:47 has no hits.

BS05922.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:21 Download gff for BS05922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-PA 157..1026 17..886 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:15 Download gff for BS05922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-PA 157..1026 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:11 Download gff for BS05922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 196..1067 17..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:37 Download gff for BS05922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 196..1067 17..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:37 Download gff for BS05922.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6803206..6803254 840..888 97 -> Minus
2L 6803310..6803522 627..839 100 -> Minus
2L 6803592..6803888 330..626 100 -> Minus
2L 6803946..6804258 17..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:11 Download gff for BS05922.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6803206..6803254 840..888 97 -> Minus
arm_2L 6803310..6803522 627..839 100 -> Minus
arm_2L 6803592..6803888 330..626 100 -> Minus
arm_2L 6803946..6804258 17..329 100   Minus

BS05922.5prime Sequence

880 bp (745 high quality bases) assembled on 2005-12-03

> BS05922.5prime
GAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTA
ATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGA
AAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACAC
AACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCA
CTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTG
GAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCT
ACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTT
GGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCT
GCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGT
TACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTT
TCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGAT
GCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATT
GGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCC
AAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAG
AGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGG
CGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACA
GGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCAC
ACGGAGTGCCTCTTTGATTGGGTAGGTCTC

BS05922.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-PA 1026 CG11236-RA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-RA 1181 CG11236-RA 42..905 17..880 4320 100 Plus
CG11236-RB 1172 CG11236-RB 42..896 17..880 4175 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6803592..6803888 433..729 1485 100 Plus
2L 23513712 2L 6803310..6803524 220..434 1075 100 Plus
2L 23513712 2L 6803052..6803254 17..219 1015 100 Plus
2L 23513712 2L 6803946..6804096 730..880 755 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:15:27 has no hits.

BS05922.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:22 Download gff for BS05922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:16 Download gff for BS05922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:09:49 Download gff for BS05922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 38..905 10..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:56:48 Download gff for BS05922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 38..905 10..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:56:48 Download gff for BS05922.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6803592..6803888 433..729 100 -> Plus
2L 6803946..6804096 730..880 100   Plus
2L 6803048..6803254 10..219 98 -> Plus
2L 6803310..6803522 220..432 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:09:49 Download gff for BS05922.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6803048..6803254 10..219 98 -> Plus
arm_2L 6803310..6803522 220..432 100 -> Plus
arm_2L 6803592..6803888 433..729 100 -> Plus
arm_2L 6803946..6804096 730..880 100   Plus

BS05922.complete Sequence

1058 bp (1058 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635300

> BS05922.complete
GAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTA
ATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGA
AAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACAC
AACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCA
CTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTG
GAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCT
ACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTT
GGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCT
GCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGT
TACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTT
TCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGAT
GCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATT
GGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCC
AAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAG
AGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGG
CGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACA
GGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCAC
ACGGAGTGCCTCTTTGATTGGGTAGGTCTCCGGCCGGGTCGCACCCAACT
CCGACTGGAAGCCGAGCGCCGCGGCCGCAAGCTCCTCATCCACAACTATG
GACATGGCGGCAGTGGAGTCACTTTGTGCTGGGGCTGTGCCGACGATGTC
CTCAATATCCTGTTGGCCGCCAAGAACGGTTCCAAATTATAAAAGCTTTC
TAGACCAT

BS05922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-RA 1026 CG11236-PA 1..1026 17..1042 5130 100 Plus
CG11236-RB 1017 CG11236-PB 1..1017 17..1042 4960 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-RA 1181 CG11236-RA 42..1067 17..1042 5130 100 Plus
CG11236-RB 1172 CG11236-RB 42..1058 17..1042 4960 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6803946..6804258 730..1042 1565 100 Plus
2L 23513712 2L 6803592..6803888 433..729 1485 100 Plus
2L 23513712 2L 6803310..6803524 220..434 1075 100 Plus
2L 23513712 2L 6803052..6803254 17..219 1015 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:58 has no hits.

BS05922.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:48 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:00 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 16..1045 10..1042 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:32 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 42..1065 17..1040 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:48 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 16..1045 10..1042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:01 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 42..1065 17..1040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:01 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6803946..6804256 730..1040 100   Plus
2L 6803052..6803254 17..219 100 -> Plus
2L 6803310..6803522 220..432 100 -> Plus
2L 6803592..6803888 433..729 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:32 Download gff for BS05922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6803052..6803254 17..219 100 -> Plus
arm_2L 6803310..6803522 220..432 100 -> Plus
arm_2L 6803592..6803888 433..729 100 -> Plus
arm_2L 6803946..6804256 730..1040 100   Plus

BS05922.pep Sequence

Translation from 16 to 1041

> BS05922.pep
MPNIAVIGAGVNGVASAIKILEHYVNDGKTPIKVTIISEDFTPNTTGDGS
AGLWGPYLLGGTSQAKVYKWSKSMHQFLEKIWLSEDAGEAGVCLLPCIRL
STSTVDTVEDFWRDIVYGAVDLSKEQLAAYNKGRSVKFTSGLSFVTYTSE
PIKLLPYLMKRFTRNGGVVVRKRITDLDAFVADSEYDVIVNCSGLGSKTL
LNDDQMYAVRGQVSRVRANWIFSAVLDESDDGNYIIPNTESVVLGGTHQE
RDYNTKVCQNDRRMIVDGCQRYIPGLEHTECLFDWVGLRPGRTQLRLEAE
RRGRKLLIHNYGHGGSGVTLCWGCADDVLNILLAAKNGSKL*

BS05922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-PA 341 CG11236-PA 1..341 1..341 1799 100 Plus
CG11236-PB 338 CG11236-PB 1..338 1..341 1771 99.1 Plus
CG12338-PB 335 CG12338-PB 2..318 3..325 408 31.8 Plus
CG12338-PA 335 CG12338-PA 2..318 3..325 408 31.8 Plus