Clone Sequence Records
BS05922.3prime Sequence
888 bp (764 high quality bases) assembled on 2005-12-03
> BS05922.3prime
ATGGTCTAGAAAGCTTTTATAATTTGGAACCGTTCTTGGCGGCCAACAGG
ATATTGAGGACATCGTCGGCACAGCCCCAGCACAAAGTGACTCCACTGCC
GCCATGTCCATAGTTGTGGATGAGGAGCTTGCGGCCGCGGCGCTCGGCTT
CCAGTCGGAGTTGGGTGCGACCCGGCCGGAGACCTACCCAATCAAAGAGG
CACTCCGTGTGCTCCAAACCAGGAATGTACCGCTGACAGCCATCGACGAT
CATCCGCCTGTCGTTCTGGCAGACTTTAGTGTTGTAGTCCCGCTCCTGAT
GGGTTCCGCCCAGGACAACACTTTCGGTGTTGGGTATAATATAGTTGCCA
TCATCACTCTCGTCCAGCACGGCAGAGAAAATCCAGTTGGCCCTCACCCG
GGAAACTTGGCCACGCACTGCGTACATTTGATCGTCGTTTAGTAGGGTCT
TAGAGCCCAATCCGGAGCAATTGACTATCACATCGTACTCGGAATCGGCT
ACAAATGCATCCAGGTCTGTAATCCTTTTCCGGACAACAACACCTCCATT
TCGGGTGAAACGCTTCATCAAATACGGCAGTAGCTTAATGGGCTCCGAGG
TGTAGGTAACAAAGGATAAACCAGACGTGAACTTAACGCTGCGACCTTTA
TTGTAGGCAGCCAGCTGTTCCTTGGACAGATCCACTGCTCCATAGACAAT
GTCACGCCAAAAATCTTCGACCGTGTCCACCGTTGAGGTGCTCAGCCGAA
TGCAGGGTAGCAGACAAACGCCAGCCTCTCCGGCATCCTCGCTCAGCCAG
ATCTTCTCCAAAAATTGGTGCATGCTCTTCGACCACTTGTAGACTTTCGC
CTGCGAAGTGCCGCCCAGAAGGTACGGACCCCAGAGAA
BS05922.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-PA | 1026 | CG11236-RA | 156..1026 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1181 | CG11236-RA | 197..1067 | 887..17 | 4355 | 100 | Minus |
CG11236-RB | 1172 | CG11236-RB | 197..1058 | 887..17 | 4210 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6803946..6804258 | 329..17 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 6803592..6803888 | 626..330 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 6803310..6803524 | 839..625 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 6803207..6803254 | 887..840 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:57:47 has no hits.
BS05922.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:21 Download gff for
BS05922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 157..1026 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:15 Download gff for
BS05922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 157..1026 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:11 Download gff for
BS05922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 196..1067 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:37 Download gff for
BS05922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 196..1067 | 17..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:37 Download gff for
BS05922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6803206..6803254 | 840..888 | 97 | -> | Minus |
2L | 6803310..6803522 | 627..839 | 100 | -> | Minus |
2L | 6803592..6803888 | 330..626 | 100 | -> | Minus |
2L | 6803946..6804258 | 17..329 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:11 Download gff for
BS05922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6803206..6803254 | 840..888 | 97 | -> | Minus |
arm_2L | 6803310..6803522 | 627..839 | 100 | -> | Minus |
arm_2L | 6803592..6803888 | 330..626 | 100 | -> | Minus |
arm_2L | 6803946..6804258 | 17..329 | 100 | | Minus |
BS05922.5prime Sequence
880 bp (745 high quality bases) assembled on 2005-12-03
> BS05922.5prime
GAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTA
ATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGA
AAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACAC
AACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCA
CTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTG
GAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCT
ACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTT
GGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCT
GCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGT
TACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTT
TCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGAT
GCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATT
GGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCC
AAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAG
AGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGG
CGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACA
GGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCAC
ACGGAGTGCCTCTTTGATTGGGTAGGTCTC
BS05922.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-PA | 1026 | CG11236-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1181 | CG11236-RA | 42..905 | 17..880 | 4320 | 100 | Plus |
CG11236-RB | 1172 | CG11236-RB | 42..896 | 17..880 | 4175 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6803592..6803888 | 433..729 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 6803310..6803524 | 220..434 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 6803052..6803254 | 17..219 | 1015 | 100 | Plus |
2L | 23513712 | 2L | 6803946..6804096 | 730..880 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:15:27 has no hits.
BS05922.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:22 Download gff for
BS05922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:16 Download gff for
BS05922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:09:49 Download gff for
BS05922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 38..905 | 10..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:56:48 Download gff for
BS05922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 38..905 | 10..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:56:48 Download gff for
BS05922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
2L | 6803946..6804096 | 730..880 | 100 | | Plus |
2L | 6803048..6803254 | 10..219 | 98 | -> | Plus |
2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:09:49 Download gff for
BS05922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6803048..6803254 | 10..219 | 98 | -> | Plus |
arm_2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
arm_2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
arm_2L | 6803946..6804096 | 730..880 | 100 | | Plus |
BS05922.complete Sequence
1058 bp (1058 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635300
> BS05922.complete
GAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTA
ATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGA
AAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACAC
AACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCA
CTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTG
GAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCT
ACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTT
GGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCT
GCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGT
TACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTT
TCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGAT
GCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATT
GGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCC
AAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAG
AGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGG
CGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACA
GGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCAC
ACGGAGTGCCTCTTTGATTGGGTAGGTCTCCGGCCGGGTCGCACCCAACT
CCGACTGGAAGCCGAGCGCCGCGGCCGCAAGCTCCTCATCCACAACTATG
GACATGGCGGCAGTGGAGTCACTTTGTGCTGGGGCTGTGCCGACGATGTC
CTCAATATCCTGTTGGCCGCCAAGAACGGTTCCAAATTATAAAAGCTTTC
TAGACCAT
BS05922.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1026 | CG11236-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG11236-RB | 1017 | CG11236-PB | 1..1017 | 17..1042 | 4960 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1181 | CG11236-RA | 42..1067 | 17..1042 | 5130 | 100 | Plus |
CG11236-RB | 1172 | CG11236-RB | 42..1058 | 17..1042 | 4960 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6803946..6804258 | 730..1042 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 6803592..6803888 | 433..729 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 6803310..6803524 | 220..434 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 6803052..6803254 | 17..219 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:58 has no hits.
BS05922.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:48 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:00 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 16..1045 | 10..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:32 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 42..1065 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:48 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 16..1045 | 10..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:01 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 42..1065 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:01 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6803946..6804256 | 730..1040 | 100 | | Plus |
2L | 6803052..6803254 | 17..219 | 100 | -> | Plus |
2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:32 Download gff for
BS05922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6803052..6803254 | 17..219 | 100 | -> | Plus |
arm_2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
arm_2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
arm_2L | 6803946..6804256 | 730..1040 | 100 | | Plus |
BS05922.pep Sequence
Translation from 16 to 1041
> BS05922.pep
MPNIAVIGAGVNGVASAIKILEHYVNDGKTPIKVTIISEDFTPNTTGDGS
AGLWGPYLLGGTSQAKVYKWSKSMHQFLEKIWLSEDAGEAGVCLLPCIRL
STSTVDTVEDFWRDIVYGAVDLSKEQLAAYNKGRSVKFTSGLSFVTYTSE
PIKLLPYLMKRFTRNGGVVVRKRITDLDAFVADSEYDVIVNCSGLGSKTL
LNDDQMYAVRGQVSRVRANWIFSAVLDESDDGNYIIPNTESVVLGGTHQE
RDYNTKVCQNDRRMIVDGCQRYIPGLEHTECLFDWVGLRPGRTQLRLEAE
RRGRKLLIHNYGHGGSGVTLCWGCADDVLNILLAAKNGSKL*
BS05922.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-PA | 341 | CG11236-PA | 1..341 | 1..341 | 1799 | 100 | Plus |
CG11236-PB | 338 | CG11236-PB | 1..338 | 1..341 | 1771 | 99.1 | Plus |
CG12338-PB | 335 | CG12338-PB | 2..318 | 3..325 | 408 | 31.8 | Plus |
CG12338-PA | 335 | CG12338-PA | 2..318 | 3..325 | 408 | 31.8 | Plus |