Clone BS05927 Report

Search the DGRC for BS05927

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptJon65Aiii-RA
Protein status:BS05927.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05927.3prime Sequence

814 bp (777 high quality bases) assembled on 2005-12-03

> BS05927.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGACGCCGGTGTTTGTCTTGATCCAG
TCCAAGTAGCTGGTCACACGGGTGAAGCCAGCAGGGGCACCGGACTCACA
ACCAGCGCTCGACACGAAGGAGGTGACACCGATGAGCTTACTGTCGCTGA
CCAGGACCAGTGGGCCGCCGGAGTCGCCGTTGCAGGTGGACACTTTGTTG
GGGGTAGCAACGCAGATCACGTTGTTGGTGGCTACCAGAGAGCCATAAGT
GTTCTGGCATTGAGAGACGGACACAACCTCGAAGACTTCGTACTGCAGAG
TGTTAGCGACGCTGGTGGCGGAATCGGAGGTCTTGCCCCATCCGGAGGCA
ATAGCCTGCTGTCCAGTGTAAGTGGAGTAGGTACCGGCGATGGCGGGCAG
CTCAACCTTGTTAATAAGGGCGGTGAAGGCAACCGTTGGGGTCTTGATCA
GGGAAATGTCGTTCCTCAACACAATCGAGTTGTAGCTGGCGTGCTGAACG
AAGTTATCGGCGGAAACGGTCTGGACCAGCTGGGCACTAGTACGCACGGT
GGCTCCGTAGTAAATGGTCACAGCGGAGGCACCAGAAGTGCAGTGAGCAG
CAGTGAGAACCCAGGTGTTGTCGATGATGGAACCACCGCACCACCAGCTG
CCGCTGGTGCTGGCGAAGCTGAGTCCCACCTGGTAGGGGAACTGGCCAGA
AGTGGCGGTCTTGCCGTTGGTGATGCGACCCTCGATATTGGTCACGGCGG
GCAGGTCACGGGGGTGGATCGGCACCTGCTGGGGCAGCAGACCGGCGGAG
GCGGTGGCCAGAGC

BS05927.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6483-PA 825 Jon65Aiii-RA 28..825 814..17 3990 100 Minus
CG6467-PA 816 Jon65Aiv-RA 762..806 77..33 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiii-RA 875 CG6483-RA 48..845 814..17 3990 100 Minus
yip7-RA 904 CG6457-RA 139..332 730..537 445 82.6 Minus
CG10477-RB 1039 CG10477-RB 118..528 730..320 420 73.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6051095..6051660 582..17 2830 100 Minus
3L 28110227 3L 6050804..6051036 814..582 1165 100 Minus
3L 28110227 3L 6035354..6035493 730..591 355 83.6 Minus
2L 23513712 2L 4954842..4954947 548..653 260 83 Plus
2L 23513712 2L 4952852..4953000 588..736 235 77.2 Plus
3L 28110227 3L 6034352..6034494 588..730 220 76.9 Plus
3L 28110227 3L 6039920..6040086 191..25 220 75.4 Minus
3R 32079331 3R 29922421..29922518 647..550 205 80.6 Minus
Blast to na_te.dros performed on 2015-02-12 19:37:11 has no hits.

BS05927.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:30 Download gff for BS05927.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6483-PA 28..825 17..814 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:27 Download gff for BS05927.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6483-PA 28..825 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:25 Download gff for BS05927.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 48..847 13..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:58:45 Download gff for BS05927.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 48..847 13..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:58:45 Download gff for BS05927.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6050804..6051036 582..814 100 -> Minus
3L 6051096..6051662 13..581 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:25 Download gff for BS05927.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6043904..6044136 582..814 100 -> Minus
arm_3L 6044196..6044762 13..581 99   Minus

BS05927.5prime Sequence

856 bp (768 high quality bases) assembled on 2005-12-03

> BS05927.5prime
GAAGTTATCAGTCGACATGAAAGTGCTCGTAGTCTTCGCCCTGGCTCTGG
CCACCGCCTCCGCCGGTCTGCTGCCCCAGCAGGTGCCGATCCACCCCCGT
GACCTGCCCGCCGTGACCAATATCGAGGGTCGCATCACCAACGGCAAGAC
CGCCACTTCTGGCCAGTTCCCCTACCAGGTGGGACTCAGCTTCGCCAGCA
CCAGCGGCAGCTGGTGGTGCGGTGGTTCCATCATCGACAACACCTGGGTT
CTCACTGCTGCTCACTGCACTTCTGGTGCCTCCGCTGTGACCATTTACTA
CGGAGCCACCGTGCGTACTAGTGCCCAGCTGGTCCAGACCGTTTCCGCCG
ATAACTTCGTTCAGCACGCCAGCTACAACTCGATTGTGTTGAGGAACGAC
ATTTCCCTGATCAAGACCCCAACGGTTGCCTTCACCGCCCTTATTAACAA
GGTTGAGCTGCCCGCCATCGCCGGTACCTACTCCACTTACACTGGACAGC
AGGCTATTGCCTCCGGATGGGGCAAGACCTCCGATTCCGCCACCAGCGTC
GCTAACACTCTGCAGTACGAAGTCTTCGAGGTTGTGTCCGTCTCTCAATG
CCAGAACACTTATGGCTCTCTGGTAGCCACCAACAACGTGATCTGCGTTG
CTACCCCCAACAAAGTGTCCACCTGCAACGGCGACTCCGGCGGCCCACTG
GTCCTGGTCAGCGACAGTAAGCTCATCGGTGTCACCTCCTTCGTGTCGAG
CGCTGGTTGTGAGTCCGGTGCCCCTGCTGGCTTCACCCGTGTGACCAGCT
ACTTGGACTGGATCAAGACAAACACGGGCGTCTCCTACTAAAAGCTTTCT
AGACCA

BS05927.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6483-PA 825 Jon65Aiii-RA 1..825 17..841 4100 99.8 Plus
CG6467-PA 816 Jon65Aiv-RA 762..806 781..825 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiii-RA 875 CG6483-RA 20..845 16..841 4115 99.9 Plus
yip7-RA 904 CG6457-RA 139..332 128..321 445 82.6 Plus
CG10477-RB 1039 CG10477-RB 118..528 128..538 420 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6051095..6051660 276..841 2815 99.8 Plus
3L 28110227 3L 6050776..6051036 16..276 1305 100 Plus
3L 28110227 3L 6035354..6035493 128..267 355 83.6 Plus
2L 23513712 2L 4954842..4954947 310..205 260 83 Minus
2L 23513712 2L 4952852..4953000 270..122 235 77.2 Minus
3L 28110227 3L 6034352..6034494 270..128 220 76.9 Minus
3L 28110227 3L 6039920..6040086 667..833 220 75.4 Plus
3R 32079331 3R 29922421..29922518 211..308 205 80.6 Plus
Blast to na_te.dros performed on 2015-02-02 11:46:51 has no hits.

BS05927.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:31 Download gff for BS05927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6483-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:28 Download gff for BS05927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6483-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:34 Download gff for BS05927.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 11..847 8..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:54 Download gff for BS05927.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 11..847 8..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:54 Download gff for BS05927.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6050767..6051036 8..276 98 -> Plus
3L 6051096..6051662 277..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:34 Download gff for BS05927.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6043867..6044136 8..276 98 -> Plus
arm_3L 6044196..6044762 277..845 99   Plus

BS05927.complete Sequence

857 bp (857 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635301

> BS05927.complete
GAAGTTATCAGTCGACATGAAAGTGCTCGTAGTCTTCGCCCTGGCTCTGG
CCACCGCCTCCGCCGGTCTGCTGCCCCAGCAGGTGCCGATCCACCCCCGT
GACCTGCCCGCCGTGACCAATATCGAGGGTCGCATCACCAACGGCAAGAC
CGCCACTTCTGGCCAGTTCCCCTACCAGGTGGGACTCAGCTTCGCCAGCA
CCAGCGGCAGCTGGTGGTGCGGTGGTTCCATCATCGACAACACCTGGGTT
CTCACTGCTGCTCACTGCACTTCTGGTGCCTCCGCTGTGACCATTTACTA
CGGAGCCACCGTGCGTACTAGTGCCCAGCTGGTCCAGACCGTTTCCGCCG
ATAACTTCGTTCAGCACGCCAGCTACAACTCGATTGTGTTGAGGAACGAC
ATTTCCCTGATCAAGACCCCAACGGTTGCCTTCACCGCCCTTATTAACAA
GGTTGAGCTGCCCGCCATCGCCGGTACCTACTCCACTTACACTGGACAGC
AGGCTATTGCCTCCGGATGGGGCAAGACCTCCGATTCCGCCACCAGCGTC
GCTAACACTCTGCAGTACGAAGTCTTCGAGGTTGTGTCCGTCTCTCAATG
CCAGAACACTTATGGCTCTCTGGTAGCCACCAACAACGTGATCTGCGTTG
CTACCCCCAACAAAGTGTCCACCTGCAACGGCGACTCCGGCGGCCCACTG
GTCCTGGTCAGCGACAGTAAGCTCATCGGTGTCACCTCCTTCGTGTCGAG
CGCTGGTTGTGAGTCCGGTGCCCCTGCTGGCTTCACCCGTGTGACCAGCT
ACTTGGACTGGATCAAGACAAACACCGGCGTCTCCTACTAAAAGCTTTCT
AGACCAT

BS05927.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiii-RA 825 CG6483-PA 1..825 17..841 4125 100 Plus
yip7-RA 813 CG6457-PA 112..305 128..321 445 82 Plus
CG10477-RB 819 CG10477-PB 112..522 128..538 420 73.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiii-RA 875 CG6483-RA 20..845 16..841 4130 100 Plus
yip7-RA 904 CG6457-RA 139..332 128..321 445 82 Plus
CG10477-RB 1039 CG10477-RB 118..528 128..538 420 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6051095..6051660 276..841 2830 100 Plus
3L 28110227 3L 6050776..6051036 16..276 1305 100 Plus
3L 28110227 3L 6035354..6035493 128..267 355 83.6 Plus
2L 23513712 2L 4954842..4954947 310..205 260 83 Minus
2L 23513712 2L 4952852..4953000 270..122 235 77.2 Minus
3L 28110227 3L 6034352..6034494 270..128 220 76.9 Minus
3L 28110227 3L 6039920..6040086 667..833 220 75.4 Plus
3R 32079331 3R 29922421..29922518 211..308 205 80.6 Plus
3R 32079331 3R 30487094..30487215 847..726 205 77.9 Minus
Blast to na_te.dros performed on 2014-11-27 13:13:11 has no hits.

BS05927.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:49 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:01 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 1..830 15..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:07:58 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 21..843 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:49 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 1..830 15..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:29 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiii-RA 21..843 17..839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:29 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6050777..6051036 17..276 100 -> Plus
3L 6051096..6051658 277..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:07:58 Download gff for BS05927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6043877..6044136 17..276 100 -> Plus
arm_3L 6044196..6044758 277..839 100   Plus

BS05927.pep Sequence

Translation from 16 to 840

> BS05927.pep
MKVLVVFALALATASAGLLPQQVPIHPRDLPAVTNIEGRITNGKTATSGQ
FPYQVGLSFASTSGSWWCGGSIIDNTWVLTAAHCTSGASAVTIYYGATVR
TSAQLVQTVSADNFVQHASYNSIVLRNDISLIKTPTVAFTALINKVELPA
IAGTYSTYTGQQAIASGWGKTSDSATSVANTLQYEVFEVVSVSQCQNTYG
SLVATNNVICVATPNKVSTCNGDSGGPLVLVSDSKLIGVTSFVSSAGCES
GAPAGFTRVTSYLDWIKTNTGVSY*

BS05927.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiii-PA 274 CG6483-PA 1..274 1..274 1401 100 Plus
CG10477-PB 272 CG10477-PB 1..272 1..274 972 67.5 Plus
CG10477-PA 272 CG10477-PA 1..272 1..274 972 67.5 Plus
yip7-PA 270 CG6457-PA 1..270 1..272 922 63.2 Plus
Jon65Aiv-PA 271 CG6467-PA 1..271 1..272 783 56.2 Plus