Clone Sequence Records
BS05927.3prime Sequence
814 bp (777 high quality bases) assembled on 2005-12-03
> BS05927.3prime
ATGGTCTAGAAAGCTTTTAGTAGGAGACGCCGGTGTTTGTCTTGATCCAG
TCCAAGTAGCTGGTCACACGGGTGAAGCCAGCAGGGGCACCGGACTCACA
ACCAGCGCTCGACACGAAGGAGGTGACACCGATGAGCTTACTGTCGCTGA
CCAGGACCAGTGGGCCGCCGGAGTCGCCGTTGCAGGTGGACACTTTGTTG
GGGGTAGCAACGCAGATCACGTTGTTGGTGGCTACCAGAGAGCCATAAGT
GTTCTGGCATTGAGAGACGGACACAACCTCGAAGACTTCGTACTGCAGAG
TGTTAGCGACGCTGGTGGCGGAATCGGAGGTCTTGCCCCATCCGGAGGCA
ATAGCCTGCTGTCCAGTGTAAGTGGAGTAGGTACCGGCGATGGCGGGCAG
CTCAACCTTGTTAATAAGGGCGGTGAAGGCAACCGTTGGGGTCTTGATCA
GGGAAATGTCGTTCCTCAACACAATCGAGTTGTAGCTGGCGTGCTGAACG
AAGTTATCGGCGGAAACGGTCTGGACCAGCTGGGCACTAGTACGCACGGT
GGCTCCGTAGTAAATGGTCACAGCGGAGGCACCAGAAGTGCAGTGAGCAG
CAGTGAGAACCCAGGTGTTGTCGATGATGGAACCACCGCACCACCAGCTG
CCGCTGGTGCTGGCGAAGCTGAGTCCCACCTGGTAGGGGAACTGGCCAGA
AGTGGCGGTCTTGCCGTTGGTGATGCGACCCTCGATATTGGTCACGGCGG
GCAGGTCACGGGGGTGGATCGGCACCTGCTGGGGCAGCAGACCGGCGGAG
GCGGTGGCCAGAGC
BS05927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6483-PA | 825 | Jon65Aiii-RA | 28..825 | 814..17 | 3990 | 100 | Minus |
CG6467-PA | 816 | Jon65Aiv-RA | 762..806 | 77..33 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiii-RA | 875 | CG6483-RA | 48..845 | 814..17 | 3990 | 100 | Minus |
yip7-RA | 904 | CG6457-RA | 139..332 | 730..537 | 445 | 82.6 | Minus |
CG10477-RB | 1039 | CG10477-RB | 118..528 | 730..320 | 420 | 73.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6051095..6051660 | 582..17 | 2830 | 100 | Minus |
3L | 28110227 | 3L | 6050804..6051036 | 814..582 | 1165 | 100 | Minus |
3L | 28110227 | 3L | 6035354..6035493 | 730..591 | 355 | 83.6 | Minus |
2L | 23513712 | 2L | 4954842..4954947 | 548..653 | 260 | 83 | Plus |
2L | 23513712 | 2L | 4952852..4953000 | 588..736 | 235 | 77.2 | Plus |
3L | 28110227 | 3L | 6034352..6034494 | 588..730 | 220 | 76.9 | Plus |
3L | 28110227 | 3L | 6039920..6040086 | 191..25 | 220 | 75.4 | Minus |
3R | 32079331 | 3R | 29922421..29922518 | 647..550 | 205 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:37:11 has no hits.
BS05927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:30 Download gff for
BS05927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6483-PA | 28..825 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:27 Download gff for
BS05927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6483-PA | 28..825 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:25 Download gff for
BS05927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 48..847 | 13..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:58:45 Download gff for
BS05927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 48..847 | 13..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:58:45 Download gff for
BS05927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6050804..6051036 | 582..814 | 100 | -> | Minus |
3L | 6051096..6051662 | 13..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:25 Download gff for
BS05927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6043904..6044136 | 582..814 | 100 | -> | Minus |
arm_3L | 6044196..6044762 | 13..581 | 99 | | Minus |
BS05927.5prime Sequence
856 bp (768 high quality bases) assembled on 2005-12-03
> BS05927.5prime
GAAGTTATCAGTCGACATGAAAGTGCTCGTAGTCTTCGCCCTGGCTCTGG
CCACCGCCTCCGCCGGTCTGCTGCCCCAGCAGGTGCCGATCCACCCCCGT
GACCTGCCCGCCGTGACCAATATCGAGGGTCGCATCACCAACGGCAAGAC
CGCCACTTCTGGCCAGTTCCCCTACCAGGTGGGACTCAGCTTCGCCAGCA
CCAGCGGCAGCTGGTGGTGCGGTGGTTCCATCATCGACAACACCTGGGTT
CTCACTGCTGCTCACTGCACTTCTGGTGCCTCCGCTGTGACCATTTACTA
CGGAGCCACCGTGCGTACTAGTGCCCAGCTGGTCCAGACCGTTTCCGCCG
ATAACTTCGTTCAGCACGCCAGCTACAACTCGATTGTGTTGAGGAACGAC
ATTTCCCTGATCAAGACCCCAACGGTTGCCTTCACCGCCCTTATTAACAA
GGTTGAGCTGCCCGCCATCGCCGGTACCTACTCCACTTACACTGGACAGC
AGGCTATTGCCTCCGGATGGGGCAAGACCTCCGATTCCGCCACCAGCGTC
GCTAACACTCTGCAGTACGAAGTCTTCGAGGTTGTGTCCGTCTCTCAATG
CCAGAACACTTATGGCTCTCTGGTAGCCACCAACAACGTGATCTGCGTTG
CTACCCCCAACAAAGTGTCCACCTGCAACGGCGACTCCGGCGGCCCACTG
GTCCTGGTCAGCGACAGTAAGCTCATCGGTGTCACCTCCTTCGTGTCGAG
CGCTGGTTGTGAGTCCGGTGCCCCTGCTGGCTTCACCCGTGTGACCAGCT
ACTTGGACTGGATCAAGACAAACACGGGCGTCTCCTACTAAAAGCTTTCT
AGACCA
BS05927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6483-PA | 825 | Jon65Aiii-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
CG6467-PA | 816 | Jon65Aiv-RA | 762..806 | 781..825 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiii-RA | 875 | CG6483-RA | 20..845 | 16..841 | 4115 | 99.9 | Plus |
yip7-RA | 904 | CG6457-RA | 139..332 | 128..321 | 445 | 82.6 | Plus |
CG10477-RB | 1039 | CG10477-RB | 118..528 | 128..538 | 420 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6051095..6051660 | 276..841 | 2815 | 99.8 | Plus |
3L | 28110227 | 3L | 6050776..6051036 | 16..276 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 6035354..6035493 | 128..267 | 355 | 83.6 | Plus |
2L | 23513712 | 2L | 4954842..4954947 | 310..205 | 260 | 83 | Minus |
2L | 23513712 | 2L | 4952852..4953000 | 270..122 | 235 | 77.2 | Minus |
3L | 28110227 | 3L | 6034352..6034494 | 270..128 | 220 | 76.9 | Minus |
3L | 28110227 | 3L | 6039920..6040086 | 667..833 | 220 | 75.4 | Plus |
3R | 32079331 | 3R | 29922421..29922518 | 211..308 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:46:51 has no hits.
BS05927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:31 Download gff for
BS05927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6483-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:28 Download gff for
BS05927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6483-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:34 Download gff for
BS05927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 11..847 | 8..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:54 Download gff for
BS05927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 11..847 | 8..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:54 Download gff for
BS05927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6050767..6051036 | 8..276 | 98 | -> | Plus |
3L | 6051096..6051662 | 277..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:34 Download gff for
BS05927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6043867..6044136 | 8..276 | 98 | -> | Plus |
arm_3L | 6044196..6044762 | 277..845 | 99 | | Plus |
BS05927.complete Sequence
857 bp (857 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635301
> BS05927.complete
GAAGTTATCAGTCGACATGAAAGTGCTCGTAGTCTTCGCCCTGGCTCTGG
CCACCGCCTCCGCCGGTCTGCTGCCCCAGCAGGTGCCGATCCACCCCCGT
GACCTGCCCGCCGTGACCAATATCGAGGGTCGCATCACCAACGGCAAGAC
CGCCACTTCTGGCCAGTTCCCCTACCAGGTGGGACTCAGCTTCGCCAGCA
CCAGCGGCAGCTGGTGGTGCGGTGGTTCCATCATCGACAACACCTGGGTT
CTCACTGCTGCTCACTGCACTTCTGGTGCCTCCGCTGTGACCATTTACTA
CGGAGCCACCGTGCGTACTAGTGCCCAGCTGGTCCAGACCGTTTCCGCCG
ATAACTTCGTTCAGCACGCCAGCTACAACTCGATTGTGTTGAGGAACGAC
ATTTCCCTGATCAAGACCCCAACGGTTGCCTTCACCGCCCTTATTAACAA
GGTTGAGCTGCCCGCCATCGCCGGTACCTACTCCACTTACACTGGACAGC
AGGCTATTGCCTCCGGATGGGGCAAGACCTCCGATTCCGCCACCAGCGTC
GCTAACACTCTGCAGTACGAAGTCTTCGAGGTTGTGTCCGTCTCTCAATG
CCAGAACACTTATGGCTCTCTGGTAGCCACCAACAACGTGATCTGCGTTG
CTACCCCCAACAAAGTGTCCACCTGCAACGGCGACTCCGGCGGCCCACTG
GTCCTGGTCAGCGACAGTAAGCTCATCGGTGTCACCTCCTTCGTGTCGAG
CGCTGGTTGTGAGTCCGGTGCCCCTGCTGGCTTCACCCGTGTGACCAGCT
ACTTGGACTGGATCAAGACAAACACCGGCGTCTCCTACTAAAAGCTTTCT
AGACCAT
BS05927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiii-RA | 825 | CG6483-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
yip7-RA | 813 | CG6457-PA | 112..305 | 128..321 | 445 | 82 | Plus |
CG10477-RB | 819 | CG10477-PB | 112..522 | 128..538 | 420 | 73.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiii-RA | 875 | CG6483-RA | 20..845 | 16..841 | 4130 | 100 | Plus |
yip7-RA | 904 | CG6457-RA | 139..332 | 128..321 | 445 | 82 | Plus |
CG10477-RB | 1039 | CG10477-RB | 118..528 | 128..538 | 420 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6051095..6051660 | 276..841 | 2830 | 100 | Plus |
3L | 28110227 | 3L | 6050776..6051036 | 16..276 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 6035354..6035493 | 128..267 | 355 | 83.6 | Plus |
2L | 23513712 | 2L | 4954842..4954947 | 310..205 | 260 | 83 | Minus |
2L | 23513712 | 2L | 4952852..4953000 | 270..122 | 235 | 77.2 | Minus |
3L | 28110227 | 3L | 6034352..6034494 | 270..128 | 220 | 76.9 | Minus |
3L | 28110227 | 3L | 6039920..6040086 | 667..833 | 220 | 75.4 | Plus |
3R | 32079331 | 3R | 29922421..29922518 | 211..308 | 205 | 80.6 | Plus |
3R | 32079331 | 3R | 30487094..30487215 | 847..726 | 205 | 77.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:13:11 has no hits.
BS05927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:49 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:01 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 1..830 | 15..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:07:58 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 21..843 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:49 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 1..830 | 15..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:29 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiii-RA | 21..843 | 17..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:29 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6050777..6051036 | 17..276 | 100 | -> | Plus |
3L | 6051096..6051658 | 277..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:07:58 Download gff for
BS05927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6043877..6044136 | 17..276 | 100 | -> | Plus |
arm_3L | 6044196..6044758 | 277..839 | 100 | | Plus |
BS05927.pep Sequence
Translation from 16 to 840
> BS05927.pep
MKVLVVFALALATASAGLLPQQVPIHPRDLPAVTNIEGRITNGKTATSGQ
FPYQVGLSFASTSGSWWCGGSIIDNTWVLTAAHCTSGASAVTIYYGATVR
TSAQLVQTVSADNFVQHASYNSIVLRNDISLIKTPTVAFTALINKVELPA
IAGTYSTYTGQQAIASGWGKTSDSATSVANTLQYEVFEVVSVSQCQNTYG
SLVATNNVICVATPNKVSTCNGDSGGPLVLVSDSKLIGVTSFVSSAGCES
GAPAGFTRVTSYLDWIKTNTGVSY*
BS05927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiii-PA | 274 | CG6483-PA | 1..274 | 1..274 | 1401 | 100 | Plus |
CG10477-PB | 272 | CG10477-PB | 1..272 | 1..274 | 972 | 67.5 | Plus |
CG10477-PA | 272 | CG10477-PA | 1..272 | 1..274 | 972 | 67.5 | Plus |
yip7-PA | 270 | CG6457-PA | 1..270 | 1..272 | 922 | 63.2 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..272 | 783 | 56.2 | Plus |