Clone BS05929 Report

Search the DGRC for BS05929

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4872-RA
Protein status:BS05929.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05929.3prime Sequence

868 bp (755 high quality bases) assembled on 2005-12-03

> BS05929.3prime
ATGGTCTAGAAAGCTTTCAGGAATCCTTTGCGCTAGAGATAATGCAATCC
TGAACCGCCTGGGCCACACAGGCGTCCTCCGAGGCCATGCCCATGGATTG
AAAGATGCTGATTTCTAGCTCCTTGGGATAGTTTCCATCCAGAATGATCT
GACCCACTTCAGCGGTGATCGGCGCAGGTAATCCCACCAATTCAGCCTCG
GCATTGGCATAGCAATCCACGTAGACCTTGGCCTGCTGGTAAATCTTTGG
AGCCACCTCCGAAAAGTGAACTTCGCCGGCTCCCACAGCGTTAATATGAA
CAGCCCGTTTGGATTTCAGATCTGCCAACTGGATAAGCGGCTCCTTGGAG
TACGTGGCGATGCAGATGATATCGGCATCCTGGCAAGCTTCGTGAGGACT
TGGACATACAGTAATCTGGGTTCCGCTCTCGGTGTTCAATTTCTGCCGCA
GTTGGTCCGCTAAACCCAGTGCCTTTGCCTGCGTGCGATTGTAAAGATTA
AGCTGCCTCACCCGGAAGTTCGCGCAGAAAGCGGCAGCATGGAGTTGTCC
TTGAACTCCACAGCCCACGATGGCCACGTTGATATTCCTTTCCTGCTCCG
CCTGCGCCCCAAAGCGCCTGAAGTACAGATACTTGGTGGCCACCAGTGAA
GCGGATACAGTGCGCCAGGTGGTCAAGTCCGTGCCCTCCATTATGGCCGA
CAGTTGACCGGTTTGATTGTCGAACAGCAGCACATGGGCATGGATGCTGG
GCAGCGGAGGATCCCGTCGGGGATTCCCACTGAACGAGGTCACCAACTTG
CAGGCCAGTGTTGAGTGGGTGTGCTCCACTTCCCCAGGATCCCTTGACGA
TTCCAGCCTGTAGTTGCC

BS05929.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 1068 CG4872-RA 217..1068 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1283 CG4872-RA 325..1176 868..17 4260 100 Minus
CG9104-RA 1707 CG9104-RA 1533..1607 17..91 375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881671..16882250 868..289 2900 100 Minus
X 23542271 X 16882320..16882519 289..90 1000 100 Minus
X 23542271 X 16882609..16882683 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:37:13 has no hits.

BS05929.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:32 Download gff for BS05929.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 217..1068 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:30 Download gff for BS05929.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 217..1068 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:09 Download gff for BS05929.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 325..1187 6..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:01 Download gff for BS05929.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 325..1187 6..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:01 Download gff for BS05929.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16881671..16882250 289..868 100 -> Minus
X 16882321..16882518 91..288 100 -> Minus
X 16882610..16882694 6..90 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:09 Download gff for BS05929.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775704..16776283 289..868 100 -> Minus
arm_X 16776354..16776551 91..288 100 -> Minus
arm_X 16776643..16776727 6..90 95   Minus

BS05929.5prime Sequence

938 bp (656 high quality bases) assembled on 2005-12-03

> BS05929.5prime
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATCTGAAATCCAACGGGCTGT
TCATATTAACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCTC
CAAGATTTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCNATGCCG
AAGCTGATTTGGTGGGATTACCTGCGCCGATCACCGCT

BS05929.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 1068 CG4872-RA 1..776 17..792 3880 100 Plus
CG4872-PA 1068 CG4872-RA 838..924 852..938 366 96.5 Plus
CG4872-PA 1068 CG4872-RA 776..838 791..853 315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1283 CG4872-RA 109..1032 17..938 4529 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881455..16882250 17..811 3930 99.9 Plus
X 23542271 X 16882320..16882448 811..938 554 96.9 Plus
Blast to na_te.dros performed on 2015-02-13 08:42:29 has no hits.

BS05929.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:33 Download gff for BS05929.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 1..924 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:31 Download gff for BS05929.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 1..924 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:16 Download gff for BS05929.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..1032 17..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:53 Download gff for BS05929.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..1032 17..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:53 Download gff for BS05929.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16882321..16882448 812..938 96   Plus
X 16881455..16882250 17..811 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:16 Download gff for BS05929.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775488..16776283 17..811 99 -> Plus
arm_X 16776354..16776481 812..938 96   Plus

BS05929.complete Sequence

1100 bp (1100 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635302

> BS05929.complete
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTG
TTCATATTAACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCT
CCAAAGATTTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCAATGC
CGAGGCTGAATTGGTGGGATTACCTGCGCCGATCACCGCTGAAGTGGGTC
AGATCATTCTGGATGGAAACTATCCCAAGGAGCTAGAAATCAGCATCTTT
CAATCCATGGGCATGGCCTCGGAGGACGCCTGTGTGGCCCAGGCGGTTCA
GGATTGCATTATCTCTAGCGCAAAGGATTCCTGAAAGCTTTCTAGACCAT

BS05929.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1068 CG4872-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1283 CG4872-RA 109..1176 17..1084 5340 100 Plus
CG9104-RA 1707 CG9104-RA 1533..1607 1084..1010 375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881455..16882250 17..812 3980 100 Plus
X 23542271 X 16882320..16882519 812..1011 1000 100 Plus
X 23542271 X 16882609..16882683 1010..1084 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:54 has no hits.

BS05929.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:50 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:03 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 86..1164 17..1095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:59 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..1175 17..1083 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:51 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 86..1164 17..1095 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:22 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..1175 17..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:22 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
X 16881455..16882250 17..812 100 -> Plus
X 16882321..16882518 813..1010 100 -> Plus
X 16882610..16882682 1011..1083 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:59 Download gff for BS05929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775488..16776283 17..812 100 -> Plus
arm_X 16776354..16776551 813..1010 100 -> Plus
arm_X 16776643..16776715 1011..1083 100   Plus

BS05929.pep Sequence

Translation from 16 to 1083

> BS05929.pep
MSSSTPAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQP
KRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTS
FSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVAT
KYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLNLYNR
TQAKALGLADQLRQKLNTESGTQITVCPSPHEACQDADIICIATYSKEPL
IQLADLKSKRAVHINAVGAGEVHFSEVAPKIYQQAKVYVDCYANAEAELV
GLPAPITAEVGQIILDGNYPKELEISIFQSMGMASEDACVAQAVQDCIIS
SAKDS*

BS05929.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 355 CG4872-PA 1..355 1..355 1829 100 Plus