Clone Sequence Records
BS05929.3prime Sequence
868 bp (755 high quality bases) assembled on 2005-12-03
> BS05929.3prime
ATGGTCTAGAAAGCTTTCAGGAATCCTTTGCGCTAGAGATAATGCAATCC
TGAACCGCCTGGGCCACACAGGCGTCCTCCGAGGCCATGCCCATGGATTG
AAAGATGCTGATTTCTAGCTCCTTGGGATAGTTTCCATCCAGAATGATCT
GACCCACTTCAGCGGTGATCGGCGCAGGTAATCCCACCAATTCAGCCTCG
GCATTGGCATAGCAATCCACGTAGACCTTGGCCTGCTGGTAAATCTTTGG
AGCCACCTCCGAAAAGTGAACTTCGCCGGCTCCCACAGCGTTAATATGAA
CAGCCCGTTTGGATTTCAGATCTGCCAACTGGATAAGCGGCTCCTTGGAG
TACGTGGCGATGCAGATGATATCGGCATCCTGGCAAGCTTCGTGAGGACT
TGGACATACAGTAATCTGGGTTCCGCTCTCGGTGTTCAATTTCTGCCGCA
GTTGGTCCGCTAAACCCAGTGCCTTTGCCTGCGTGCGATTGTAAAGATTA
AGCTGCCTCACCCGGAAGTTCGCGCAGAAAGCGGCAGCATGGAGTTGTCC
TTGAACTCCACAGCCCACGATGGCCACGTTGATATTCCTTTCCTGCTCCG
CCTGCGCCCCAAAGCGCCTGAAGTACAGATACTTGGTGGCCACCAGTGAA
GCGGATACAGTGCGCCAGGTGGTCAAGTCCGTGCCCTCCATTATGGCCGA
CAGTTGACCGGTTTGATTGTCGAACAGCAGCACATGGGCATGGATGCTGG
GCAGCGGAGGATCCCGTCGGGGATTCCCACTGAACGAGGTCACCAACTTG
CAGGCCAGTGTTGAGTGGGTGTGCTCCACTTCCCCAGGATCCCTTGACGA
TTCCAGCCTGTAGTTGCC
BS05929.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-PA | 1068 | CG4872-RA | 217..1068 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1283 | CG4872-RA | 325..1176 | 868..17 | 4260 | 100 | Minus |
CG9104-RA | 1707 | CG9104-RA | 1533..1607 | 17..91 | 375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16881671..16882250 | 868..289 | 2900 | 100 | Minus |
X | 23542271 | X | 16882320..16882519 | 289..90 | 1000 | 100 | Minus |
X | 23542271 | X | 16882609..16882683 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:37:13 has no hits.
BS05929.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:32 Download gff for
BS05929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 217..1068 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:30 Download gff for
BS05929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 217..1068 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:02:09 Download gff for
BS05929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 325..1187 | 6..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:01 Download gff for
BS05929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 325..1187 | 6..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:01 Download gff for
BS05929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16881671..16882250 | 289..868 | 100 | -> | Minus |
X | 16882321..16882518 | 91..288 | 100 | -> | Minus |
X | 16882610..16882694 | 6..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:02:09 Download gff for
BS05929.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16775704..16776283 | 289..868 | 100 | -> | Minus |
arm_X | 16776354..16776551 | 91..288 | 100 | -> | Minus |
arm_X | 16776643..16776727 | 6..90 | 95 | | Minus |
BS05929.5prime Sequence
938 bp (656 high quality bases) assembled on 2005-12-03
> BS05929.5prime
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATCTGAAATCCAACGGGCTGT
TCATATTAACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCTC
CAAGATTTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCNATGCCG
AAGCTGATTTGGTGGGATTACCTGCGCCGATCACCGCT
BS05929.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-PA | 1068 | CG4872-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
CG4872-PA | 1068 | CG4872-RA | 838..924 | 852..938 | 366 | 96.5 | Plus |
CG4872-PA | 1068 | CG4872-RA | 776..838 | 791..853 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1283 | CG4872-RA | 109..1032 | 17..938 | 4529 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16881455..16882250 | 17..811 | 3930 | 99.9 | Plus |
X | 23542271 | X | 16882320..16882448 | 811..938 | 554 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:42:29 has no hits.
BS05929.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:33 Download gff for
BS05929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 1..924 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:31 Download gff for
BS05929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 1..924 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:16 Download gff for
BS05929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..1032 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:53 Download gff for
BS05929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..1032 | 17..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:53 Download gff for
BS05929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882321..16882448 | 812..938 | 96 | | Plus |
X | 16881455..16882250 | 17..811 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:16 Download gff for
BS05929.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16775488..16776283 | 17..811 | 99 | -> | Plus |
arm_X | 16776354..16776481 | 812..938 | 96 | | Plus |
BS05929.complete Sequence
1100 bp (1100 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635302
> BS05929.complete
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTG
TTCATATTAACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCT
CCAAAGATTTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCAATGC
CGAGGCTGAATTGGTGGGATTACCTGCGCCGATCACCGCTGAAGTGGGTC
AGATCATTCTGGATGGAAACTATCCCAAGGAGCTAGAAATCAGCATCTTT
CAATCCATGGGCATGGCCTCGGAGGACGCCTGTGTGGCCCAGGCGGTTCA
GGATTGCATTATCTCTAGCGCAAAGGATTCCTGAAAGCTTTCTAGACCAT
BS05929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1068 | CG4872-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1283 | CG4872-RA | 109..1176 | 17..1084 | 5340 | 100 | Plus |
CG9104-RA | 1707 | CG9104-RA | 1533..1607 | 1084..1010 | 375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16881455..16882250 | 17..812 | 3980 | 100 | Plus |
X | 23542271 | X | 16882320..16882519 | 812..1011 | 1000 | 100 | Plus |
X | 23542271 | X | 16882609..16882683 | 1010..1084 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:54 has no hits.
BS05929.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:50 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:03 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 86..1164 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:59 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..1175 | 17..1083 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:51 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 86..1164 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:22 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..1175 | 17..1083 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:22 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16881455..16882250 | 17..812 | 100 | -> | Plus |
X | 16882321..16882518 | 813..1010 | 100 | -> | Plus |
X | 16882610..16882682 | 1011..1083 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:59 Download gff for
BS05929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16775488..16776283 | 17..812 | 100 | -> | Plus |
arm_X | 16776354..16776551 | 813..1010 | 100 | -> | Plus |
arm_X | 16776643..16776715 | 1011..1083 | 100 | | Plus |
BS05929.pep Sequence
Translation from 16 to 1083
> BS05929.pep
MSSSTPAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQP
KRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTS
FSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVAT
KYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLNLYNR
TQAKALGLADQLRQKLNTESGTQITVCPSPHEACQDADIICIATYSKEPL
IQLADLKSKRAVHINAVGAGEVHFSEVAPKIYQQAKVYVDCYANAEAELV
GLPAPITAEVGQIILDGNYPKELEISIFQSMGMASEDACVAQAVQDCIIS
SAKDS*
BS05929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-PA | 355 | CG4872-PA | 1..355 | 1..355 | 1829 | 100 | Plus |