Clone Sequence Records
BS05937.3prime Sequence
627 bp (626 high quality bases) assembled on 2005-12-03
> BS05937.3prime
ATGGTCTAGAAAGCTTTTACCACTTAGAGGGGCTTTCATCCCTGAGCATC
GTTGTGGGCACGGTGGCCGAAGTGCATTCCGGACTCAATAGCTCCAACGG
CGTCGGTCGTCGCTCCTGCAGCTGGCGGGCAATCTCCGCTTGGCTGAGGC
CGGGCGACACATCCTTCGGAGCAGTCTGTAGTTGCGGTGGCTGCTGCGAA
GGTGACACCGTGGCGGTAAGTTGTTTTTTCGCAGCAATTGCTGGGATTCC
ATGGTTCGCGGGCAACATTCCGGTTAGGATTTTTCGTCTTCGACCTCGTG
GGGCGCCCACTGTGGGCATGTGCGGAGGCACACCTGGAATTCCTGGTGCC
CCCTTGTCTTTGTGCTTGCGCCGAATGGCGTCCTTGGATGTTTGCGATCC
GCCGGCAACGCCGGACGTAGAAGCTGGCTCCGAATCGGAGCTGTCGGTGG
CATCCGAGTCGCTAGAGTCCTTGGCCGGCTTCTCGTACACCAGCAGACGG
TCCAGCAGGAAGGTACGATCCCGGGAAACTTTCAGCAGACGCCGCTGGTT
GGTGTGCAATAGATCCTGGAAGTACTCGTTCTCCTGTAAACACAAAAAGC
TGTGACTTGCCATGTCGACTGATAACT
BS05937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-PC | 597 | CG18004-RC | 1..597 | 613..17 | 2960 | 99.8 | Minus |
| CG18004-PB | 876 | CG18004-RB | 217..779 | 583..21 | 2790 | 99.8 | Minus |
| CG18004-PA | 894 | CG18004-RA | 235..797 | 583..21 | 2790 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-RA | 1044 | CG18004-RA | 317..879 | 583..21 | 2800 | 99.8 | Minus |
| CG18004-RB | 1168 | CG18004-RB | 441..1003 | 583..21 | 2800 | 99.8 | Minus |
| CG18004-RD | 1026 | CG18004-RD | 317..861 | 565..21 | 2710 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10885560..10886156 | 613..17 | 2970 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:19:18 has no hits.
BS05937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:44 Download gff for
BS05937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-PC | 1..597 | 17..613 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:47 Download gff for
BS05937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-PC | 1..597 | 17..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:51:47 Download gff for
BS05937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 441..1006 | 18..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:41 Download gff for
BS05937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 441..1006 | 18..583 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:41 Download gff for
BS05937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10885560..10886162 | 11..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:51:47 Download gff for
BS05937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6773065..6773667 | 11..613 | 99 | | Minus |
BS05937.5prime Sequence
619 bp (618 high quality bases) assembled on 2005-10-22
> BS05937.5prime
CAGTCGACATGGCAAGTCACAGCTCCTTGTGTTTACAGGAGAACGAGTAC
TTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTGAAAGTTTCCCG
GGATCGTACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGCCA
AGGACTCTAGCGACTCGGATGCCACCGACAGCTCCGATTCGGAGCCAGCT
TCTACGTCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGACGCCATTCG
GCGCAAGCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCCGC
ACATGCCCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAATCCTAACC
GGAATGTTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCGAAAAAACA
ACTTACCGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACTACAGACTG
CTCCGAAGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTGCCCGCCAG
CTGCAGGAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCGGAATGCAC
TTCGGCCACCGTGCCCACAACGATGCTCAGCGATGAAAGCCCCTCTAAGT
GGTAAAAGCTTTCTAGACC
BS05937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-PC | 597 | CG18004-RC | 1..597 | 9..605 | 2935 | 99.6 | Plus |
| CG18004-PB | 876 | CG18004-RB | 217..779 | 39..601 | 2815 | 100 | Plus |
| CG18004-PA | 894 | CG18004-RA | 235..797 | 39..601 | 2815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-RA | 1044 | CG18004-RA | 317..879 | 39..601 | 2815 | 100 | Plus |
| CG18004-RB | 1168 | CG18004-RB | 441..1003 | 39..601 | 2815 | 100 | Plus |
| CG18004-RD | 1026 | CG18004-RD | 317..861 | 57..601 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10885560..10886156 | 9..605 | 2955 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:09:50 has no hits.
BS05937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:45 Download gff for
BS05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-PC | 1..597 | 9..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:48 Download gff for
BS05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-PC | 1..597 | 9..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:43 Download gff for
BS05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 441..1006 | 39..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:36 Download gff for
BS05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 441..1006 | 39..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:36 Download gff for
BS05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10885560..10886162 | 9..611 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:43 Download gff for
BS05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6773065..6773667 | 9..611 | 99 | | Plus |
BS05937.complete Sequence
629 bp (629 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635304
> BS05937.complete
GAAGTTATCAGTCGACATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGA
ACGAGTACTTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTGAAA
GTTTCCCGGGATCGTACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAA
GCCGGCCAAGGACTCTAGCGACTCGGATGCCACCGACAGCTCCGATTCGG
AGCCAGCTTCTACGTCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGAC
GCCATTCGGCGCAAGCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGT
GCCTCCGCACATGCCCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAA
TCCTAACCGGAATGTTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCG
AAAAAACAACTTACCGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACT
ACAGACTGCTCCGAAGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTG
CCCGCCAGCTGCAGGAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCG
GAATGCACTTCGGCCACCGTGCCCACAACGATGCTCAGCGATGAAAGCCC
CTCTAAGTGGTAAAAGCTTTCTAGACCAT
BS05937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-RA | 894 | CG18004-PA | 235..797 | 47..609 | 2815 | 100 | Plus |
| CG18004-RB | 876 | CG18004-PB | 217..779 | 47..609 | 2815 | 100 | Plus |
| CG18004-RD | 876 | CG18004-PD | 235..779 | 65..609 | 2725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-RA | 1044 | CG18004-RA | 317..879 | 47..609 | 2815 | 100 | Plus |
| CG18004-RB | 1168 | CG18004-RB | 441..1003 | 47..609 | 2815 | 100 | Plus |
| CG18004-RD | 1026 | CG18004-RD | 317..861 | 65..609 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10885560..10886156 | 17..613 | 2985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:50:11 has no hits.
BS05937.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:18 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RC | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:17 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RC | 237..839 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:23 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 441..1004 | 47..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:18 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RC | 237..839 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:20 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 441..1004 | 47..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:20 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10885560..10886154 | 17..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:23 Download gff for
BS05937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6773065..6773659 | 17..611 | 100 | | Plus |
BS05937.pep Sequence
Translation from 16 to 612
> BS05937.pep
MASHSFLCLQENEYFQDLLHTNQRRLLKVSRDRTFLLDRLLVYEKPAKDS
SDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKGAPGIPGVPPHMP
TVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSPSQQPPQLQTAPK
DVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTTMLSDESPSKW*
BS05937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-PB | 291 | CG18004-PB | 71..259 | 9..197 | 956 | 98.9 | Plus |
| CG18004-PA | 297 | CG18004-PA | 77..265 | 9..197 | 956 | 98.9 | Plus |
| CG18004-PD | 291 | CG18004-PD | 79..259 | 17..197 | 921 | 100 | Plus |
