Clone Sequence Records
BS05939.3prime Sequence
777 bp (776 high quality bases) assembled on 2005-12-03
> BS05939.3prime
ATGGTCTAGAAAGCTTTCAATCGACCTTCCGCATCTGCTGCAGGATGATG
TCCTCCACCTGGACGCCATCGGGAGTGTTCAGCGCATACAACACGGCCTT
GGCCACATCCCTTGCCTGCAGTTTGGGCAGCTCGGCTACCGCCTGCGAGT
AAACACTAAGGAAATCCGTGTCTACCATGCCCGGGCAAATGCTCGTTAAT
TTAATATTTAATTTGAGAAAATGTATTTCCTGGCGCACCGTTTGGCAGAG
GGCCGTAATTGCATGCTTCGTGGCCGGATAAACGCTGAATAAGGGCACCG
GCACTTCCGGAATCCGATGGCCAAGCACGCTGTTCATGACCACAATGTGA
CCGCGAACCTTGACCGCAGCCATGTGTTTCAGTGCCTCCCGCAGGCAGCT
GGCGGTGGCCACCACATTCGTGTCGAACAGTTCCTTGATGTCCTTGGTGG
GGGATTCGCTCAGGAAGTTGGCCTTCAGGATGCCAGCGTTGCAGATGAGC
ACATGAATGGCCTGGAATTTTTCACGAATCCAGTTAAAAGCACTGGCCAA
CTGCTCTTCATCATTGAGGTCACATTGCCGGGCAAAAATCTTTCCAACGC
CGGTCACTTGATCCCTGAGTGCCTCAATGAGTTCCACTCGACGAGCTAGG
CCCACAACTACCATTCCGGCATTGGCCAGTTCTATAGCTGTGGTAGCTCC
AATGCCCACGGAGGCTCCAGTGACAACCGCCACCTTGTTGCGCCAGTAGA
AATTATTTTCCATGTCGACTGATAACT
BS05939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7077-PA | 747 | CG7077-RA | 1..747 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 1103 | CG7077-RB | 217..965 | 764..16 | 3745 | 100 | Minus |
rdhB-RA | 971 | CG7077-RA | 85..833 | 764..16 | 3745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22355948..22356126 | 194..16 | 895 | 100 | Minus |
3R | 32079331 | 3R | 22352529..22352696 | 624..457 | 840 | 100 | Minus |
3R | 32079331 | 3R | 22352329..22352471 | 764..622 | 715 | 100 | Minus |
3R | 32079331 | 3R | 22355687..22355827 | 334..194 | 705 | 100 | Minus |
3R | 32079331 | 3R | 22352748..22352875 | 457..330 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:26:52 has no hits.
BS05939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:46 Download gff for
BS05939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:50 Download gff for
BS05939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:55 Download gff for
BS05939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..839 | 6..773 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:00 Download gff for
BS05939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..839 | 6..773 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:00 Download gff for
BS05939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22352320..22352470 | 623..773 | 97 | -> | Minus |
3R | 22352531..22352696 | 457..622 | 100 | -> | Minus |
3R | 22352749..22352875 | 330..456 | 100 | -> | Minus |
3R | 22355692..22355827 | 194..329 | 100 | -> | Minus |
3R | 22355949..22356132 | 6..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:55 Download gff for
BS05939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18178042..18178192 | 623..773 | 97 | -> | Minus |
arm_3R | 18178253..18178418 | 457..622 | 100 | -> | Minus |
arm_3R | 18178471..18178597 | 330..456 | 100 | -> | Minus |
arm_3R | 18181414..18181549 | 194..329 | 100 | -> | Minus |
arm_3R | 18181671..18181854 | 6..193 | 97 | | Minus |
BS05939.5prime Sequence
777 bp (749 high quality bases) assembled on 2005-12-03
> BS05939.5prime
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATTGAAAGCTTTCTAGACC
BS05939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7077-PA | 747 | CG7077-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 1103 | CG7077-RB | 217..965 | 16..764 | 3745 | 100 | Plus |
rdhB-RA | 971 | CG7077-RA | 85..833 | 16..764 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22355948..22356126 | 586..764 | 895 | 100 | Plus |
3R | 32079331 | 3R | 22352529..22352696 | 156..323 | 840 | 100 | Plus |
3R | 32079331 | 3R | 22352329..22352471 | 16..158 | 715 | 100 | Plus |
3R | 32079331 | 3R | 22355687..22355827 | 446..586 | 705 | 100 | Plus |
3R | 32079331 | 3R | 22352748..22352875 | 323..450 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:00:13 has no hits.
BS05939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:47 Download gff for
BS05939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:51 Download gff for
BS05939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:10 Download gff for
BS05939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..839 | 7..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:54 Download gff for
BS05939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..839 | 7..774 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:54 Download gff for
BS05939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22355692..22355827 | 451..586 | 100 | -> | Plus |
3R | 22352320..22352470 | 7..157 | 97 | -> | Plus |
3R | 22352531..22352696 | 158..323 | 100 | -> | Plus |
3R | 22352749..22352875 | 324..450 | 100 | -> | Plus |
3R | 22355949..22356132 | 587..774 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:10 Download gff for
BS05939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18181414..18181549 | 451..586 | 100 | -> | Plus |
arm_3R | 18178042..18178192 | 7..157 | 97 | -> | Plus |
arm_3R | 18178253..18178418 | 158..323 | 100 | -> | Plus |
arm_3R | 18178471..18178597 | 324..450 | 100 | -> | Plus |
arm_3R | 18181671..18181854 | 587..774 | 97 | | Plus |
BS05939.complete Sequence
779 bp (779 high quality bases) assembled on 2005-10-27
> BS05939.complete
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATTGAAAGCTTTCTAGACCAT
BS05939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 747 | CG7077-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
rdhB-RA | 747 | CG7077-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 1103 | CG7077-RB | 217..965 | 16..764 | 3745 | 100 | Plus |
rdhB-RA | 971 | CG7077-RA | 85..833 | 16..764 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22355948..22356126 | 586..764 | 895 | 100 | Plus |
3R | 32079331 | 3R | 22352529..22352696 | 156..323 | 840 | 100 | Plus |
3R | 32079331 | 3R | 22352329..22352471 | 16..158 | 715 | 100 | Plus |
3R | 32079331 | 3R | 22355687..22355827 | 446..586 | 705 | 100 | Plus |
3R | 32079331 | 3R | 22352748..22352875 | 323..450 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:12 has no hits.
BS05939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:31 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-RA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:42 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-RA | 78..841 | 7..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:24 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 86..831 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:32 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-RA | 78..841 | 7..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:37 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 86..831 | 17..762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:37 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22352531..22352696 | 158..323 | 100 | -> | Plus |
3R | 22352749..22352875 | 324..450 | 100 | -> | Plus |
3R | 22355692..22355827 | 451..586 | 100 | -> | Plus |
3R | 22355949..22356124 | 587..762 | 100 | | Plus |
3R | 22352330..22352470 | 17..157 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:24 Download gff for
BS05939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18178253..18178418 | 158..323 | 100 | -> | Plus |
arm_3R | 18178471..18178597 | 324..450 | 100 | -> | Plus |
arm_3R | 18181414..18181549 | 451..586 | 100 | -> | Plus |
arm_3R | 18181671..18181846 | 587..762 | 100 | | Plus |
arm_3R | 18178052..18178192 | 17..157 | 100 | -> | Plus |
BS05939.pep Sequence
Translation from 16 to 762
> BS05939.pep
MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR
DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF
LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR
IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD
FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVD*
BS05939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-PB | 248 | CG7077-PB | 1..248 | 1..248 | 1249 | 100 | Plus |
rdhB-PA | 248 | CG7077-PA | 1..248 | 1..248 | 1249 | 100 | Plus |
antdh-PA | 250 | CG1386-PA | 4..246 | 7..244 | 469 | 40.7 | Plus |
CG9150-PB | 251 | CG9150-PB | 4..247 | 7..244 | 455 | 40.6 | Plus |
CG8757-PB | 252 | CG8757-PB | 4..246 | 7..242 | 439 | 39.1 | Plus |