Clone BS05939 Report

Search the DGRC for BS05939

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptrdhB-RA
Protein status:BS05939.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05939.3prime Sequence

777 bp (776 high quality bases) assembled on 2005-12-03

> BS05939.3prime
ATGGTCTAGAAAGCTTTCAATCGACCTTCCGCATCTGCTGCAGGATGATG
TCCTCCACCTGGACGCCATCGGGAGTGTTCAGCGCATACAACACGGCCTT
GGCCACATCCCTTGCCTGCAGTTTGGGCAGCTCGGCTACCGCCTGCGAGT
AAACACTAAGGAAATCCGTGTCTACCATGCCCGGGCAAATGCTCGTTAAT
TTAATATTTAATTTGAGAAAATGTATTTCCTGGCGCACCGTTTGGCAGAG
GGCCGTAATTGCATGCTTCGTGGCCGGATAAACGCTGAATAAGGGCACCG
GCACTTCCGGAATCCGATGGCCAAGCACGCTGTTCATGACCACAATGTGA
CCGCGAACCTTGACCGCAGCCATGTGTTTCAGTGCCTCCCGCAGGCAGCT
GGCGGTGGCCACCACATTCGTGTCGAACAGTTCCTTGATGTCCTTGGTGG
GGGATTCGCTCAGGAAGTTGGCCTTCAGGATGCCAGCGTTGCAGATGAGC
ACATGAATGGCCTGGAATTTTTCACGAATCCAGTTAAAAGCACTGGCCAA
CTGCTCTTCATCATTGAGGTCACATTGCCGGGCAAAAATCTTTCCAACGC
CGGTCACTTGATCCCTGAGTGCCTCAATGAGTTCCACTCGACGAGCTAGG
CCCACAACTACCATTCCGGCATTGGCCAGTTCTATAGCTGTGGTAGCTCC
AATGCCCACGGAGGCTCCAGTGACAACCGCCACCTTGTTGCGCCAGTAGA
AATTATTTTCCATGTCGACTGATAACT

BS05939.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7077-PA 747 CG7077-RA 1..747 763..17 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 1103 CG7077-RB 217..965 764..16 3745 100 Minus
rdhB-RA 971 CG7077-RA 85..833 764..16 3745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356126 194..16 895 100 Minus
3R 32079331 3R 22352529..22352696 624..457 840 100 Minus
3R 32079331 3R 22352329..22352471 764..622 715 100 Minus
3R 32079331 3R 22355687..22355827 334..194 705 100 Minus
3R 32079331 3R 22352748..22352875 457..330 640 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:26:52 has no hits.

BS05939.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:46 Download gff for BS05939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 17..763 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:50 Download gff for BS05939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:55 Download gff for BS05939.3prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..839 6..773 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:00 Download gff for BS05939.3prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..839 6..773 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:00 Download gff for BS05939.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22352320..22352470 623..773 97 -> Minus
3R 22352531..22352696 457..622 100 -> Minus
3R 22352749..22352875 330..456 100 -> Minus
3R 22355692..22355827 194..329 100 -> Minus
3R 22355949..22356132 6..193 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:55 Download gff for BS05939.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18178042..18178192 623..773 97 -> Minus
arm_3R 18178253..18178418 457..622 100 -> Minus
arm_3R 18178471..18178597 330..456 100 -> Minus
arm_3R 18181414..18181549 194..329 100 -> Minus
arm_3R 18181671..18181854 6..193 97   Minus

BS05939.5prime Sequence

777 bp (749 high quality bases) assembled on 2005-12-03

> BS05939.5prime
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATTGAAAGCTTTCTAGACC

BS05939.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7077-PA 747 CG7077-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 1103 CG7077-RB 217..965 16..764 3745 100 Plus
rdhB-RA 971 CG7077-RA 85..833 16..764 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356126 586..764 895 100 Plus
3R 32079331 3R 22352529..22352696 156..323 840 100 Plus
3R 32079331 3R 22352329..22352471 16..158 715 100 Plus
3R 32079331 3R 22355687..22355827 446..586 705 100 Plus
3R 32079331 3R 22352748..22352875 323..450 640 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:00:13 has no hits.

BS05939.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:47 Download gff for BS05939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:51 Download gff for BS05939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:10 Download gff for BS05939.5prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..839 7..774 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:54 Download gff for BS05939.5prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..839 7..774 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:54 Download gff for BS05939.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22355692..22355827 451..586 100 -> Plus
3R 22352320..22352470 7..157 97 -> Plus
3R 22352531..22352696 158..323 100 -> Plus
3R 22352749..22352875 324..450 100 -> Plus
3R 22355949..22356132 587..774 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:10 Download gff for BS05939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18181414..18181549 451..586 100 -> Plus
arm_3R 18178042..18178192 7..157 97 -> Plus
arm_3R 18178253..18178418 158..323 100 -> Plus
arm_3R 18178471..18178597 324..450 100 -> Plus
arm_3R 18181671..18181854 587..774 97   Plus

BS05939.complete Sequence

779 bp (779 high quality bases) assembled on 2005-10-27

> BS05939.complete
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATTGAAAGCTTTCTAGACCAT

BS05939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 747 CG7077-PB 1..747 17..763 3735 100 Plus
rdhB-RA 747 CG7077-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 1103 CG7077-RB 217..965 16..764 3745 100 Plus
rdhB-RA 971 CG7077-RA 85..833 16..764 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356126 586..764 895 100 Plus
3R 32079331 3R 22352529..22352696 156..323 840 100 Plus
3R 32079331 3R 22352329..22352471 16..158 715 100 Plus
3R 32079331 3R 22355687..22355827 446..586 705 100 Plus
3R 32079331 3R 22352748..22352875 323..450 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:56:12 has no hits.

BS05939.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:31 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:42 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 78..841 7..774 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:24 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 86..831 17..762 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:32 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 78..841 7..774 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:37 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 86..831 17..762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:37 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22352531..22352696 158..323 100 -> Plus
3R 22352749..22352875 324..450 100 -> Plus
3R 22355692..22355827 451..586 100 -> Plus
3R 22355949..22356124 587..762 100   Plus
3R 22352330..22352470 17..157 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:24 Download gff for BS05939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18178253..18178418 158..323 100 -> Plus
arm_3R 18178471..18178597 324..450 100 -> Plus
arm_3R 18181414..18181549 451..586 100 -> Plus
arm_3R 18181671..18181846 587..762 100   Plus
arm_3R 18178052..18178192 17..157 100 -> Plus

BS05939.pep Sequence

Translation from 16 to 762

> BS05939.pep
MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR
DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF
LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR
IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD
FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVD*

BS05939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-PB 248 CG7077-PB 1..248 1..248 1249 100 Plus
rdhB-PA 248 CG7077-PA 1..248 1..248 1249 100 Plus
antdh-PA 250 CG1386-PA 4..246 7..244 469 40.7 Plus
CG9150-PB 251 CG9150-PB 4..247 7..244 455 40.6 Plus
CG8757-PB 252 CG8757-PB 4..246 7..242 439 39.1 Plus