Clone Sequence Records
BS05941.3prime Sequence
872 bp (769 high quality bases) assembled on 2005-12-03
> BS05941.3prime
ATGGTCTAGAAAGCTTCTAGCAGAGGAACTCCAGCATGTGGCCGAGGCTG
GGAAGGTAGGTATCTGGCACCAGGATCTTCTTCTTGGGGTCACCCTCCTC
GATGATCTGCTGCACTTCCTTCGGGGTGTTCACACCACTGCCGACCATCA
GGGATTGGAAACCACAGTTGGAAGCGAAGTGCATATCCGTCTGCAGTGTA
TCGCCCACCATTAGTGTGGTTTCCGGCTTTATGGCCCCGGACTGCATGAG
TGTAGACGCCATCCAGGGATTGGGTTTTCCCAGCACCAGCGGCGACCTTC
CGGTATAGGCTTTCATGGCCGCCAAGGTGGCACCGGCGCCCACCATCACC
CGGTTATTTCCGATGGGATAGGCGGCATCTAAACAGGTGCCGAGAAAAAT
GACATCGGGATTCAGCAGATAGCTGCCGGTTCGAACCAGCTTGGCCATGT
TGAAACCCTCATCCCGGCCCACAATTACTGCTCCCACATCGGGATCCAGT
TCCAACTCAGTGACGAACTCGTGCATGGGCTTCTCCAGCTTTTCGGACAT
TTTCAGGGAGCAGATGCCAAATTTTTCCAGCTCAAAATGAACTCCTTTCT
CGCCCATGACGAAAACCTTCTTCTGAAAGTTTTTGACAGCCAGGAAATTG
GCACACGAAAAGGACGAAGTCAGTACATTATCCTCCTTGATCTCTATGCC
AAAACCTTTCGCCTTATCGGCCATCTCCTGCCTTGAAATCTCGGAATTGT
TAGAGATTATGAAAATCTTTCGGCCGGTGGTGTTCATGTAATTGAAAGTA
TCCACAGCTCCCGTCATTGCCTTCGAGAAGTGCCAAAGGACTCCATCGGC
ATCAAGGATCACGGATTCGAAT
BS05941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-PA | 924 | CG32488-RA | 130..924 | 811..17 | 3975 | 100 | Minus |
| CG32488-PA | 924 | CG32488-RA | 69..125 | 872..816 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-RB | 1245 | CG32488-RB | 90..946 | 872..16 | 4240 | 99.8 | Minus |
| CG32488-RA | 1040 | CG32488-RA | 90..946 | 872..16 | 4240 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3015306..3015980 | 198..872 | 3315 | 99.4 | Plus |
| 3L | 28110227 | 3L | 3015060..3015241 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:29:21 has no hits.
BS05941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:50 Download gff for
BS05941.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-PA | 69..924 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:55 Download gff for
BS05941.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-PA | 69..924 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:17 Download gff for
BS05941.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 90..946 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:21 Download gff for
BS05941.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 90..946 | 16..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:21 Download gff for
BS05941.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3015060..3015241 | 16..197 | 100 | <- | Plus |
| 3L | 3015306..3015980 | 198..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:17 Download gff for
BS05941.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3015060..3015241 | 16..197 | 100 | <- | Plus |
| arm_3L | 3015306..3015980 | 198..872 | 99 | | Plus |
BS05941.5prime Sequence
825 bp (792 high quality bases) assembled on 2005-12-03
> BS05941.5prime
GAAGTTATCAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGT
TGCCGAAACAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATC
CTTGATGCCGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGC
TGTGGATACTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAA
TCTCTAACAATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAA
GGTTTTGGCATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTC
GTGTGCCAATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCA
TGGGCGAGAAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCC
CTGAAAATGTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGA
GTTGGAACTGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGG
GTTTCAACATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCC
GATGTCATTTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAA
TAACCGGGTGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCT
ATACCGGAAGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCG
TCTACACTCATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGT
GGGCGATACACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCC
AATCCCTGATGGTCGGCAGTGGTGT
BS05941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-PA | 924 | CG32488-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-RB | 1245 | CG32488-RB | 22..830 | 17..825 | 4045 | 100 | Plus |
| CG32488-RA | 1040 | CG32488-RA | 22..830 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3015306..3016048 | 759..17 | 3715 | 100 | Minus |
| 3L | 28110227 | 3L | 3015176..3015241 | 825..760 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:39:25 has no hits.
BS05941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:26:51 Download gff for
BS05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:00:56 Download gff for
BS05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:34 Download gff for
BS05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 18..830 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:51 Download gff for
BS05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 18..830 | 10..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:51 Download gff for
BS05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3015176..3015241 | 760..825 | 100 | <- | Minus |
| 3L | 3015306..3016052 | 10..759 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:34 Download gff for
BS05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3015176..3015241 | 760..825 | 100 | <- | Minus |
| arm_3L | 3015306..3016052 | 10..759 | 99 | | Minus |
BS05941.complete Sequence
956 bp (956 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635305
> BS05941.complete
GAAGTTATCAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGT
TGCCGAAACAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATC
CTTGATGCCGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGC
TGTGGATACTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAA
TCTCTAACAATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAA
GGTTTTGGCATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTC
GTGTGCCAATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCA
TGGGCGAGAAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCC
CTGAAAATGTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGA
GTTGGAACTGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGG
GTTTCAACATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCC
GATGTCATTTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAA
TAACCGGGTGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCT
ATACCGGAAGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCG
TCTACACTCATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGT
GGGCGATACACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCC
AATCCCTGATGGTCGGCAGTGGTGTGAACACCCCGAAGGAAGTGCAGCAG
ATCATCGAGGAGGGTGACCCCAAGAAGAAGATCCTGGTGCCAGATACCTA
CCTTCCCAGCCTCGGCCACATGCTGGAGTTCCTCTGCTAGAAGCTTTCTA
GACCAT
BS05941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-RB | 924 | CG32488-PB | 1..924 | 17..940 | 4620 | 100 | Plus |
| CG32488-RA | 924 | CG32488-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-RB | 1245 | CG32488-RB | 22..946 | 17..941 | 4625 | 100 | Plus |
| CG32488-RA | 1040 | CG32488-RA | 22..946 | 17..941 | 4625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3015306..3016048 | 759..17 | 3715 | 100 | Minus |
| 3L | 28110227 | 3L | 3015060..3015241 | 941..760 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:02:50 has no hits.
BS05941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:33 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:43 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 18..946 | 10..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:55 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 27..945 | 22..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:33 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 18..946 | 10..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:39 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 27..945 | 22..940 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:39 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3015061..3015241 | 760..940 | 100 | <- | Minus |
| 3L | 3015306..3016043 | 22..759 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:55 Download gff for
BS05941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3015061..3015241 | 760..940 | 100 | <- | Minus |
| arm_3L | 3015306..3016043 | 22..759 | 100 | | Minus |
BS05941.pep Sequence
Translation from 16 to 939
> BS05941.pep
MFKHTFTDLTKLPKQRVRQWLSTFESVILDADGVLWHFSKAIDGAVDTFN
YMNTTGRKIFIISNNSEISRQEMADKAKGFGIEIKEDNVLTSSFSCANFL
AVKNFQKKVFVMGEKGVHFELEKFGICSLKMSEKLEKPMHEFVTELELDP
DVGAVIVGRDEGFNMAKLVRTGSYLLNPDVIFLGTCLDAAYPIGNNRVMV
GAGATLAAMKAYTGRSPLVLGKPNPWMASTLMQSGAIKPETTLMVGDTLQ
TDMHFASNCGFQSLMVGSGVNTPKEVQQIIEEGDPKKKILVPDTYLPSLG
HMLEFLC*
BS05941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-PB | 307 | CG32488-PB | 1..307 | 1..307 | 1595 | 100 | Plus |
| CG32488-PA | 307 | CG32488-PA | 1..307 | 1..307 | 1595 | 100 | Plus |
| CG5567-PA | 330 | CG5567-PA | 16..319 | 1..303 | 610 | 39 | Plus |
| CG11291-PA | 308 | CG11291-PA | 1..307 | 1..307 | 604 | 39.3 | Plus |
| CG32487-PA | 320 | CG32487-PA | 19..315 | 12..306 | 564 | 39.7 | Plus |
