Clone Sequence Records
BS05955.3prime Sequence
906 bp (758 high quality bases) assembled on 2005-12-03
> BS05955.3prime
ATGGTCTAGAAAGCTTTCAGAAGTTCTTTTCCGGATCCGAGCCAACCGCA
TTGCGAATCTCGTCCATGCGATCGTATGCGATTTCGGTGGCCCAGCACAG
ACGCTTCTCCAGCTCGCTGTTGCGCCGCCGCTGCTGACGCAGTGCATCCA
GTCCGCGTTCCAACTGAGTGCATGCCTGGAAGAAGGTGCTCAGCTCGGGT
ATGTCGCCGAATTCGCCGGGATGCCGACGGAATCCCTGCGTGGCGTCCGT
GGATAGCTTGTCCAGGCGATTTTGCAGGAAACGCTGGTCGAACATCATCT
GAAGCTCTGCAGTCGTCGCTTTGCCCAACTCGTTGTTGGATTCGTTTAGG
TGCAGGTCCCGTATGCGGTCCTTCAAGCCCGTGAAGCTAACCGACTCCAA
TTTCTCGCCAATGCCCTGGAAGAGTTCGTAGCTCTGCTTGAGCTCCAGCT
GCATCTTCCGGACATCTTCGTCGATGCTTTTGGCCGCTTGCGATTCAAGG
AAGTCGGCACGGGCACTGGCCTCCACGGGCGGAGCGTCATATCCTGATCT
TAGCGAATAGCTCGAGGATGTGGAGACCGGATCCGATGGCTTCTCCTGGG
CTCCACCTCCAGTTAAACGATCTTCAGATGATCTGGTACCCGACGACGAA
CTCTTTGTACTGCCAGCGGACGAGGAGGAGGCCTTACTATTGTTCTTCTT
GGAACTCCTCGATTTTGCTTTCCTTGTTTTCCTTATGGGCCCGAAAATGG
GCAGCGGATTGGGACTCAGGAGCAGTTCCTGTGACGCCTCCTTGTCGGAA
TCATCAGCAGCCTCTTGAGATAATATAGCTGTAAGCTCGTTCCGAATGCG
ATTCATGAGCTCATCGCTTTGTTTTTCCTTATCAGTTTCCATGTCGACTG
ATAACT
BS05955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-PA | 876 | CG11656-RA | 1..876 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 1113 | CG11656-RA | 111..987 | 892..16 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13010164..13010960 | 812..16 | 3985 | 100 | Minus |
| 3R | 32079331 | 3R | 13010005..13010085 | 892..812 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:45:23 has no hits.
BS05955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:08 Download gff for
BS05955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:21 Download gff for
BS05955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:33 Download gff for
BS05955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 11..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:10 Download gff for
BS05955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 11..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:10 Download gff for
BS05955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13010007..13010084 | 813..890 | 100 | -> | Minus |
| 3R | 13010164..13010962 | 11..812 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:33 Download gff for
BS05955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835729..8835806 | 813..890 | 100 | -> | Minus |
| arm_3R | 8835886..8836684 | 11..812 | 99 | | Minus |
BS05955.5prime Sequence
905 bp (845 high quality bases) assembled on 2005-12-03
> BS05955.5prime
GAAGTTATCAGTCGACATGGAAACTGATAAGGAAAAACAAAGCGATGAGC
TCATGAATCGCATTCGGAACGAGCTTACAGCTATATTATCTCAAGAGGCT
GCTGATGATTCCGACAAGGAGGCGTCACAGGAACTGCTCCTGAGTCCCAA
TCCGCTGCCCATTTTCGGGCCCATAAGGAAAACAAGGAAAGCAAAATCGA
GGAGTTCCAAGAAGAACAATAGTAAGGCCTCCTCCTCGTCCGCTGGCAGT
ACAAAGAGTTCGTCGTCGGGTACCAGATCATCTGAAGATCGTTTAACTGG
AGGTGGAGCCCAGGAGAAGCCATCGGATCCGGTCTCCACATCCTCGAGCT
ATTCGCTAAGATCAGGATATGACGCTCCGCCCGTGGAGGCCAGTGCCCGT
GCCGACTTCCTTGAATCGCAAGCGGCCAAAAGCATCGACGAAGATGTCCG
GAAGATGCAGCTGGAGCTCAAGCAGAGCTACGAACTCTTCCAGGGCATTG
GCGAGAAATTGGAGTCGGTTAGCTTCACGGGCTTGAAGGACCGCATACGG
GACCTGCACCTAAACGAATCCAACAACGAGTTGGGCAAAGCGACGACTGC
AGAGCTTCAGATGATGTTCGACCAGCGTTTCCTGCAAAATCGCCTGGACA
AGCTATCCACGGACGCCACGCAGGGATTCCGTCGGCATCCCGGCGAATTC
GGCGACATACCCGAGCTGAGCACCTTCTTCCAGGCATGCACTCAGTTGGA
ACGCGGACTGGATGCACTGCGTCAGCAGCGGCGGCGCAACAGCGAGCTGG
AGAAGCGTCTGTGCTGGGCCACCGAAATCGCATACGATCGCATGGACGAG
ATTCGCAATGCGGTTGGCTCGGATCCGGAAAAGACTTCTGAAAGCTTTCT
AGACC
BS05955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-PA | 876 | CG11656-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 1113 | CG11656-RA | 111..987 | 17..892 | 4360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13010164..13010951 | 97..884 | 3940 | 100 | Plus |
| 3R | 32079331 | 3R | 13010005..13010085 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:30:15 has no hits.
BS05955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:10 Download gff for
BS05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:22 Download gff for
BS05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:34:19 Download gff for
BS05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:10 Download gff for
BS05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:10 Download gff for
BS05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13010007..13010084 | 19..96 | 100 | -> | Plus |
| 3R | 13010164..13010962 | 97..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:34:19 Download gff for
BS05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835729..8835806 | 19..96 | 100 | -> | Plus |
| arm_3R | 8835886..8836684 | 97..897 | 99 | | Plus |
BS05955.complete Sequence
908 bp (908 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635306
> BS05955.complete
GAAGTTATCAGTCGACATGGAAACTGATAAGGAAAAACAAAGCGATGAGC
TCATGAATCGCATTCGGAACGAGCTTACAGCTATATTATCTCAAGAGGCT
GCTGATGATTCCGACAAGGAGGCGTCACAGGAACTGCTCCTGAGTCCCAA
TCCGCTGCCCATTTTCGGGCCCATAAGGAAAACAAGGAAAGCAAAATCGA
GGAGTTCCAAGAAGAACAATAGTAAGGCCTCCTCCTCGTCCGCTGGCAGT
ACAAAGAGTTCGTCGTCGGGTACCAGATCATCTGAAGATCGTTTAACTGG
AGGTGGAGCCCAGGAGAAGCCATCGGATCCGGTCTCCACATCCTCGAGCT
ATTCGCTAAGATCAGGATATGACGCTCCGCCCGTGGAGGCCAGTGCCCGT
GCCGACTTCCTTGAATCGCAAGCGGCCAAAAGCATCGACGAAGATGTCCG
GAAGATGCAGCTGGAGCTCAAGCAGAGCTACGAACTCTTCCAGGGCATTG
GCGAGAAATTGGAGTCGGTTAGCTTCACGGGCTTGAAGGACCGCATACGG
GACCTGCACCTAAACGAATCCAACAACGAGTTGGGCAAAGCGACGACTGC
AGAGCTTCAGATGATGTTCGACCAGCGTTTCCTGCAAAATCGCCTGGACA
AGCTATCCACGGACGCCACGCAGGGATTCCGTCGGCATCCCGGCGAATTC
GGCGACATACCCGAGCTGAGCACCTTCTTCCAGGCATGCACTCAGTTGGA
ACGCGGACTGGATGCACTGCGTCAGCAGCGGCGGCGCAACAGCGAGCTGG
AGAAGCGTCTGTGCTGGGCCACCGAAATCGCATACGATCGCATGGACGAG
ATTCGCAATGCGGTTGGCTCGGATCCGGAAAAGAACTTCTGAAAGCTTTC
TAGACCAT
BS05955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 876 | CG11656-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 1113 | CG11656-RA | 111..987 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13010164..13010960 | 97..893 | 3985 | 100 | Plus |
| 3R | 32079331 | 3R | 13010005..13010085 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:03 has no hits.
BS05955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:34 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:45 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:19 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 111..985 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:34 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:17 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 111..985 | 17..891 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:17 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13010005..13010084 | 17..96 | 100 | -> | Plus |
| 3R | 13010164..13010958 | 97..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:19 Download gff for
BS05955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835727..8835806 | 17..96 | 100 | -> | Plus |
| arm_3R | 8835886..8836680 | 97..891 | 100 | | Plus |
BS05955.pep Sequence
Translation from 16 to 891
> BS05955.pep
METDKEKQSDELMNRIRNELTAILSQEAADDSDKEASQELLLSPNPLPIF
GPIRKTRKAKSRSSKKNNSKASSSSAGSTKSSSSGTRSSEDRLTGGGAQE
KPSDPVSTSSSYSLRSGYDAPPVEASARADFLESQAAKSIDEDVRKMQLE
LKQSYELFQGIGEKLESVSFTGLKDRIRDLHLNESNNELGKATTAELQMM
FDQRFLQNRLDKLSTDATQGFRRHPGEFGDIPELSTFFQACTQLERGLDA
LRQQRRRNSELEKRLCWATEIAYDRMDEIRNAVGSDPEKNF*
BS05955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-PA | 291 | CG11656-PA | 1..291 | 1..291 | 1462 | 100 | Plus |
