Clone BS05964 Report

Search the DGRC for BS05964

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptJupiter-RB
Protein status:BS05964.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05964.3prime Sequence

588 bp (587 high quality bases) assembled on 2005-12-03

> BS05964.3prime
ATGGTCTAGAAAGCTTTTACCACAGGCCCGACGAGTAGCCGCCTGGGGGA
ATGCGGTTCTTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGGCG
CTGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGT
TGCCCTCTCGGATCTTTAGCTTCTTGGGCTTGAGGCCGCCAACACCATCT
CCGTTGAGGCCGAGGCCCGTGATCGGATTGCGTGAATCGAGTTTGGAGCA
CGCCTGCTGCTCCTCCTTAATCTCGTTTGGACAGAGCCCAAGGGGCTCCT
TTACATTGCTCACGCCTGCCATCTTGTTCAGCGAGTATGGCTGTTCGGGA
TTATTTCCAGAGTCTCGCCGAGTTTGACAGCCCTCGTTCACCTGATCGGA
CTTTGTGACTGTGCTGTTATCTGCCGGCACGTCTCCAACTTCGCTATCTC
GGCACGAGTTATCAATGGATAGGGCGTCGTCAGCCGGTGGAATTGGCGTT
TCGGTTCGAGCCGGTTCTGGGGGACACAAGGATACGCGTGGGGATGTTTC
TTTGGTGTCTGGTCTTGTGCTCATGTCGACTGATAACT

BS05964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31363-PB 558 Jupiter-RB 1..558 574..17 2790 100 Minus
CG31363-PD 576 Jupiter-RD 435..576 158..17 710 100 Minus
CG31363-PH 609 Jupiter-RH 468..609 158..17 710 100 Minus
CG31363-PE 627 Jupiter-RE 486..627 158..17 710 100 Minus
CG31363-PC 594 Jupiter-RC 453..594 158..17 710 100 Minus
CG31363-PA 594 Jupiter-RA 455..594 156..17 700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RB 1583 CG31363-RB 244..801 574..17 2790 100 Minus
Jupiter-RC 1581 CG31363-RC 658..799 158..17 710 100 Minus
Jupiter-RE 1658 CG31363-RE 735..876 158..17 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11591501..11591911 157..567 2055 100 Plus
3R 32079331 3R 11591168..11591309 17..158 710 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:49:28 has no hits.

BS05964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:23 Download gff for BS05964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PB 1..558 17..574 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:41 Download gff for BS05964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PB 1..558 17..574 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:57:59 Download gff for BS05964.3prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 236..801 17..583 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:10 Download gff for BS05964.3prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 236..801 17..583 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:10 Download gff for BS05964.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11591168..11591307 17..156 100 <- Plus
3R 11591501..11591917 157..575 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:57:59 Download gff for BS05964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416890..7417029 17..156 100 <- Plus
arm_3R 7417223..7417639 157..575 99   Plus

BS05964.5prime Sequence

588 bp (587 high quality bases) assembled on 2005-12-03

> BS05964.5prime
GAAGTTATCAGTCGACATGAGCACAAGACCAGACACCAAAGAAACATCCC
CACGCGTATCCTTGTGTCCCCCAGAACCGGCTCGAACCGAAACGCCAATT
CCACCGGCTGACGACGCCCTATCCATTGATAACTCGTGCCGAGATAGCGA
AGTTGGAGACGTGCCGGCAGATAACAGCACAGTCACAAAGTCCGATCAGG
TGAACGAGGGCTGTCAAACTCGGCGAGACTCTGGAAATAATCCCGAACAG
CCATACTCGCTGAACAAGATGGCAGGCGTGAGCAATGTAAAGGAGCCCCT
TGGGCTCTGTCCAAACGAGATTAAGGAGGAGCAGCAGGCGTGCTCCAAAC
TCGATTCACGCAATCCGATCACGGGCCTCGGCCTCAACGGAGATGGTGTT
GGCGGCCTCAAGCCCAAGAAGCTAAAGATCCGAGAGGGCAACCCCGTCAC
AGGCGAGGGCTACAAGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGT
CGTCCAATGGCGGCACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGC
GGCTACTCGTCGGGCCTGTGGTAAAAGCTTTCTAGACC

BS05964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31363-PB 558 Jupiter-RB 1..558 17..574 2790 100 Plus
CG31363-PD 576 Jupiter-RD 435..576 433..574 710 100 Plus
CG31363-PH 609 Jupiter-RH 468..609 433..574 710 100 Plus
CG31363-PE 627 Jupiter-RE 486..627 433..574 710 100 Plus
CG31363-PC 594 Jupiter-RC 453..594 433..574 710 100 Plus
CG31363-PA 594 Jupiter-RA 455..594 435..574 700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RB 1583 CG31363-RB 244..801 17..574 2790 100 Plus
Jupiter-RC 1581 CG31363-RC 658..799 433..574 710 100 Plus
Jupiter-RE 1658 CG31363-RE 735..876 433..574 710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11591501..11591911 434..24 2055 100 Minus
3R 32079331 3R 11591168..11591309 574..433 710 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:12:46 has no hits.

BS05964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:24 Download gff for BS05964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PB 1..558 17..574 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:42 Download gff for BS05964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PB 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:12 Download gff for BS05964.5prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 236..801 8..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:17 Download gff for BS05964.5prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 236..801 8..574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:17 Download gff for BS05964.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11591168..11591307 435..574 100 <- Minus
3R 11591501..11591917 16..434 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:12 Download gff for BS05964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416890..7417029 435..574 100 <- Minus
arm_3R 7417223..7417639 16..434 99   Minus

BS05964.complete Sequence

590 bp (590 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635307

> BS05964.complete
GAAGTTATCAGTCGACATGAGCACAAGACCAGACACCAAAGAAACATCCC
CACGCGTATCCTTGTGTCCCCCAGAACCGGCTCGAACCGAAACGCCAATT
CCACCGGCTGACGACGCCCTATCCATTGATAACTCGTGCCGAGATAGCGA
AGTTGGAGACGTGCCGGCAGATAACAGCACAGTCACAAAGTCCGATCAGG
TGAACGAGGGCTGTCAAACTCGGCGAGACTCTGGAAATAATCCCGAACAG
CCATACTCGCTGAACAAGATGGCAGGCGTGAGCAATGTAAAGGAGCCCCT
TGGGCTCTGTCCAAACGAGATTAAGGAGGAGCAGCAGGCGTGCTCCAAAC
TCGATTCACGCAATCCGATCACGGGCCTCGGCCTCAACGGAGATGGTGTT
GGCGGCCTCAAGCCCAAGAAGCTAAAGATCCGAGAGGGCAACCCCGTCAC
AGGCGAGGGCTACAAGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGT
CGTCCAATGGCGGCACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGC
GGCTACTCGTCGGGCCTGTGGTAAAAGCTTTCTAGACCAT

BS05964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RB 558 CG31363-PB 1..558 17..574 2790 100 Plus
Jupiter-RC 594 CG31363-PC 453..594 433..574 710 100 Plus
Jupiter-RE 627 CG31363-PE 486..627 433..574 710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RB 1583 CG31363-RB 244..801 17..574 2790 100 Plus
Jupiter-RC 1581 CG31363-RC 658..799 433..574 710 100 Plus
Jupiter-RE 1658 CG31363-RE 735..876 433..574 710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11591501..11591911 434..24 2055 100 Minus
3R 32079331 3R 11591168..11591309 574..433 710 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:00:41 has no hits.

BS05964.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:35 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:47 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 236..801 8..574 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:15:57 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 244..799 17..572 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:35 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 236..801 8..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:36 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RB 244..799 17..572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:36 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11591170..11591307 435..572 100 <- Minus
3R 11591501..11591915 17..434 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:15:57 Download gff for BS05964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416892..7417029 435..572 100 <- Minus
arm_3R 7417223..7417637 17..434 99   Minus

BS05964.pep Sequence

Translation from 16 to 573

> BS05964.pep
MSTRPDTKETSPRVSLCPPEPARTETPIPPADDALSIDNSCRDSEVGDVP
ADNSTVTKSDQVNEGCQTRRDSGNNPEQPYSLNKMAGVSNVKEPLGLCPN
EIKEEQQACSKLDSRNPITGLGLNGDGVGGLKPKKLKIREGNPVTGEGYK
VVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*

BS05964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-PB 185 CG31363-PB 1..185 1..185 987 100 Plus
Jupiter-PI 105 CG31363-PI 52..105 132..185 255 88.9 Plus
Jupiter-PD 191 CG31363-PD 146..191 140..185 250 100 Plus
Jupiter-PC 197 CG31363-PC 152..197 140..185 250 100 Plus
Jupiter-PH 202 CG31363-PH 157..202 140..185 250 100 Plus