Clone Sequence Records
BS05964.3prime Sequence
588 bp (587 high quality bases) assembled on 2005-12-03
> BS05964.3prime
ATGGTCTAGAAAGCTTTTACCACAGGCCCGACGAGTAGCCGCCTGGGGGA
ATGCGGTTCTTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGGCG
CTGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGT
TGCCCTCTCGGATCTTTAGCTTCTTGGGCTTGAGGCCGCCAACACCATCT
CCGTTGAGGCCGAGGCCCGTGATCGGATTGCGTGAATCGAGTTTGGAGCA
CGCCTGCTGCTCCTCCTTAATCTCGTTTGGACAGAGCCCAAGGGGCTCCT
TTACATTGCTCACGCCTGCCATCTTGTTCAGCGAGTATGGCTGTTCGGGA
TTATTTCCAGAGTCTCGCCGAGTTTGACAGCCCTCGTTCACCTGATCGGA
CTTTGTGACTGTGCTGTTATCTGCCGGCACGTCTCCAACTTCGCTATCTC
GGCACGAGTTATCAATGGATAGGGCGTCGTCAGCCGGTGGAATTGGCGTT
TCGGTTCGAGCCGGTTCTGGGGGACACAAGGATACGCGTGGGGATGTTTC
TTTGGTGTCTGGTCTTGTGCTCATGTCGACTGATAACT
BS05964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PB | 558 | Jupiter-RB | 1..558 | 574..17 | 2790 | 100 | Minus |
CG31363-PD | 576 | Jupiter-RD | 435..576 | 158..17 | 710 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 468..609 | 158..17 | 710 | 100 | Minus |
CG31363-PE | 627 | Jupiter-RE | 486..627 | 158..17 | 710 | 100 | Minus |
CG31363-PC | 594 | Jupiter-RC | 453..594 | 158..17 | 710 | 100 | Minus |
CG31363-PA | 594 | Jupiter-RA | 455..594 | 156..17 | 700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RB | 1583 | CG31363-RB | 244..801 | 574..17 | 2790 | 100 | Minus |
Jupiter-RC | 1581 | CG31363-RC | 658..799 | 158..17 | 710 | 100 | Minus |
Jupiter-RE | 1658 | CG31363-RE | 735..876 | 158..17 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11591501..11591911 | 157..567 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 11591168..11591309 | 17..158 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:49:28 has no hits.
BS05964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:23 Download gff for
BS05964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PB | 1..558 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:41 Download gff for
BS05964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PB | 1..558 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:57:59 Download gff for
BS05964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 236..801 | 17..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:10 Download gff for
BS05964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 236..801 | 17..583 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:10 Download gff for
BS05964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591168..11591307 | 17..156 | 100 | <- | Plus |
3R | 11591501..11591917 | 157..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:57:59 Download gff for
BS05964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416890..7417029 | 17..156 | 100 | <- | Plus |
arm_3R | 7417223..7417639 | 157..575 | 99 | | Plus |
BS05964.5prime Sequence
588 bp (587 high quality bases) assembled on 2005-12-03
> BS05964.5prime
GAAGTTATCAGTCGACATGAGCACAAGACCAGACACCAAAGAAACATCCC
CACGCGTATCCTTGTGTCCCCCAGAACCGGCTCGAACCGAAACGCCAATT
CCACCGGCTGACGACGCCCTATCCATTGATAACTCGTGCCGAGATAGCGA
AGTTGGAGACGTGCCGGCAGATAACAGCACAGTCACAAAGTCCGATCAGG
TGAACGAGGGCTGTCAAACTCGGCGAGACTCTGGAAATAATCCCGAACAG
CCATACTCGCTGAACAAGATGGCAGGCGTGAGCAATGTAAAGGAGCCCCT
TGGGCTCTGTCCAAACGAGATTAAGGAGGAGCAGCAGGCGTGCTCCAAAC
TCGATTCACGCAATCCGATCACGGGCCTCGGCCTCAACGGAGATGGTGTT
GGCGGCCTCAAGCCCAAGAAGCTAAAGATCCGAGAGGGCAACCCCGTCAC
AGGCGAGGGCTACAAGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGT
CGTCCAATGGCGGCACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGC
GGCTACTCGTCGGGCCTGTGGTAAAAGCTTTCTAGACC
BS05964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PB | 558 | Jupiter-RB | 1..558 | 17..574 | 2790 | 100 | Plus |
CG31363-PD | 576 | Jupiter-RD | 435..576 | 433..574 | 710 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 468..609 | 433..574 | 710 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 486..627 | 433..574 | 710 | 100 | Plus |
CG31363-PC | 594 | Jupiter-RC | 453..594 | 433..574 | 710 | 100 | Plus |
CG31363-PA | 594 | Jupiter-RA | 455..594 | 435..574 | 700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RB | 1583 | CG31363-RB | 244..801 | 17..574 | 2790 | 100 | Plus |
Jupiter-RC | 1581 | CG31363-RC | 658..799 | 433..574 | 710 | 100 | Plus |
Jupiter-RE | 1658 | CG31363-RE | 735..876 | 433..574 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11591501..11591911 | 434..24 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 11591168..11591309 | 574..433 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:12:46 has no hits.
BS05964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:24 Download gff for
BS05964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PB | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:42 Download gff for
BS05964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PB | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:12 Download gff for
BS05964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 236..801 | 8..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:17 Download gff for
BS05964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 236..801 | 8..574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:17 Download gff for
BS05964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591168..11591307 | 435..574 | 100 | <- | Minus |
3R | 11591501..11591917 | 16..434 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:12 Download gff for
BS05964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416890..7417029 | 435..574 | 100 | <- | Minus |
arm_3R | 7417223..7417639 | 16..434 | 99 | | Minus |
BS05964.complete Sequence
590 bp (590 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635307
> BS05964.complete
GAAGTTATCAGTCGACATGAGCACAAGACCAGACACCAAAGAAACATCCC
CACGCGTATCCTTGTGTCCCCCAGAACCGGCTCGAACCGAAACGCCAATT
CCACCGGCTGACGACGCCCTATCCATTGATAACTCGTGCCGAGATAGCGA
AGTTGGAGACGTGCCGGCAGATAACAGCACAGTCACAAAGTCCGATCAGG
TGAACGAGGGCTGTCAAACTCGGCGAGACTCTGGAAATAATCCCGAACAG
CCATACTCGCTGAACAAGATGGCAGGCGTGAGCAATGTAAAGGAGCCCCT
TGGGCTCTGTCCAAACGAGATTAAGGAGGAGCAGCAGGCGTGCTCCAAAC
TCGATTCACGCAATCCGATCACGGGCCTCGGCCTCAACGGAGATGGTGTT
GGCGGCCTCAAGCCCAAGAAGCTAAAGATCCGAGAGGGCAACCCCGTCAC
AGGCGAGGGCTACAAGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGT
CGTCCAATGGCGGCACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGC
GGCTACTCGTCGGGCCTGTGGTAAAAGCTTTCTAGACCAT
BS05964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RB | 558 | CG31363-PB | 1..558 | 17..574 | 2790 | 100 | Plus |
Jupiter-RC | 594 | CG31363-PC | 453..594 | 433..574 | 710 | 100 | Plus |
Jupiter-RE | 627 | CG31363-PE | 486..627 | 433..574 | 710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RB | 1583 | CG31363-RB | 244..801 | 17..574 | 2790 | 100 | Plus |
Jupiter-RC | 1581 | CG31363-RC | 658..799 | 433..574 | 710 | 100 | Plus |
Jupiter-RE | 1658 | CG31363-RE | 735..876 | 433..574 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11591501..11591911 | 434..24 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 11591168..11591309 | 574..433 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:00:41 has no hits.
BS05964.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:35 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:47 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 236..801 | 8..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:15:57 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 244..799 | 17..572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:35 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 236..801 | 8..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:36 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RB | 244..799 | 17..572 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:36 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591170..11591307 | 435..572 | 100 | <- | Minus |
3R | 11591501..11591915 | 17..434 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:15:57 Download gff for
BS05964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416892..7417029 | 435..572 | 100 | <- | Minus |
arm_3R | 7417223..7417637 | 17..434 | 99 | | Minus |
BS05964.pep Sequence
Translation from 16 to 573
> BS05964.pep
MSTRPDTKETSPRVSLCPPEPARTETPIPPADDALSIDNSCRDSEVGDVP
ADNSTVTKSDQVNEGCQTRRDSGNNPEQPYSLNKMAGVSNVKEPLGLCPN
EIKEEQQACSKLDSRNPITGLGLNGDGVGGLKPKKLKIREGNPVTGEGYK
VVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*
BS05964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-PB | 185 | CG31363-PB | 1..185 | 1..185 | 987 | 100 | Plus |
Jupiter-PI | 105 | CG31363-PI | 52..105 | 132..185 | 255 | 88.9 | Plus |
Jupiter-PD | 191 | CG31363-PD | 146..191 | 140..185 | 250 | 100 | Plus |
Jupiter-PC | 197 | CG31363-PC | 152..197 | 140..185 | 250 | 100 | Plus |
Jupiter-PH | 202 | CG31363-PH | 157..202 | 140..185 | 250 | 100 | Plus |