Clone BS05967 Report

Search the DGRC for BS05967

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG10433-RB
Protein status:BS05967.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05967.3prime Sequence

327 bp (326 high quality bases) assembled on 2005-12-03

> BS05967.3prime
ATGGTCTAGAAAGCTTTTAGCGATGCGAAGCAGGTGTTGGGTTTGATCGG
AGTTCGTAGCAGCACTCCACGCCCTCTCCGGCACTCGTGGGACACAATCC
CTTGTTCGAGGTGGGTTCGATGCAGTCCGACTCCGCGACACACAGTCCTC
CGACCATGACGCACTGTCGGTCATTGGGATACACACGCACACCCTGCAGC
ATGTAGTAACTGGGGTCATTCACATCGTTTGTCTCGATGTTGGCCTGAGC
CTGGTGCAGCACTAGGATGCTGCTCACCAGCAGGCAGCACAGCAAGCTCC
TTCTCGGCGACATGTCGACTGATAACT

BS05967.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-PB 297 CG10433-RB 1..297 313..17 1485 100 Minus
CG10433-PA 384 CG10433-RA 1..263 313..51 1315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-RB 1112 CG10433-RB 166..464 313..15 1495 100 Minus
CG10433-RC 1945 CG10433-RC 1166..1440 313..40 1320 98.9 Minus
CG10433-RA 945 CG10433-RA 166..440 313..40 1320 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21606468..21606617 52..201 750 100 Plus
2R 25286936 2R 21606681..21606792 202..313 560 100 Plus
2R 25286936 2R 21606324..21606360 15..51 185 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:36:10 has no hits.

BS05967.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:25 Download gff for BS05967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-PB 1..297 17..313 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:44 Download gff for BS05967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-PB 1..297 17..313 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:05 Download gff for BS05967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 156..469 7..323 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:16 Download gff for BS05967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 156..469 7..323 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:16 Download gff for BS05967.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21606319..21606360 7..51 91 <- Plus
2R 21606468..21606617 52..201 100 <- Plus
2R 21606681..21606802 202..323 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:05 Download gff for BS05967.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17493824..17493865 7..51 91 <- Plus
arm_2R 17493973..17494122 52..201 100 <- Plus
arm_2R 17494186..17494307 202..323 96   Plus

BS05967.5prime Sequence

327 bp (326 high quality bases) assembled on 2005-12-03

> BS05967.5prime
GAAGTTATCAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGC
TGGTGAGCAGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACA
AACGATGTGAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTA
TCCCAATGACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGT
CGGACTGCATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCC
GGAGAGGGCGTGGAGTGCTGCTACGAACTCCGATCAAACCCAACACCTGC
TTCGCATCGCTAAAAGCTTTCTAGACC

BS05967.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-PB 297 CG10433-RB 1..297 17..313 1485 100 Plus
CG10433-PA 384 CG10433-RA 1..263 17..279 1315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-RB 1112 CG10433-RB 166..464 17..315 1495 100 Plus
CG10433-RC 1945 CG10433-RC 1166..1440 17..290 1320 98.9 Plus
CG10433-RA 945 CG10433-RA 166..440 17..290 1320 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21606468..21606617 278..129 750 100 Minus
2R 25286936 2R 21606681..21606792 128..17 560 100 Minus
2R 25286936 2R 21606324..21606360 315..279 185 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:26:21 has no hits.

BS05967.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:26 Download gff for BS05967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-PB 1..297 17..313 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:45 Download gff for BS05967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-PB 1..297 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:22 Download gff for BS05967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 156..469 7..323 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:34 Download gff for BS05967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 156..469 7..323 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:34 Download gff for BS05967.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21606319..21606360 279..323 91 <- Minus
2R 21606468..21606617 129..278 100 <- Minus
2R 21606681..21606802 7..128 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:22 Download gff for BS05967.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17493824..17493865 279..323 91 <- Minus
arm_2R 17493973..17494122 129..278 100 <- Minus
arm_2R 17494186..17494307 7..128 96   Minus

BS05967.complete Sequence

329 bp (329 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635308

> BS05967.complete
GAAGTTATCAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGC
TGGTGAGCAGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACA
AACGATGTGAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTA
TCCCAATGACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGT
CGGACTGCATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCC
GGAGAGGGCGTGGAGTGCTGCTACGAACTCCGATCAAACCCAACACCTGC
TTCGCATCGCTAAAAGCTTTCTAGACCAT

BS05967.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-RB 297 CG10433-PB 1..297 17..313 1485 100 Plus
CG10433-RC 384 CG10433-PC 1..263 17..279 1315 100 Plus
CG10433-RA 384 CG10433-PA 1..263 17..279 1315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-RB 1112 CG10433-RB 166..464 17..315 1495 100 Plus
CG10433-RC 1945 CG10433-RC 1166..1428 17..279 1315 100 Plus
CG10433-RA 945 CG10433-RA 166..428 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21606468..21606617 278..129 750 100 Minus
2R 25286936 2R 21606681..21606792 128..17 560 100 Minus
2R 25286936 2R 21606324..21606360 315..279 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:07:53 has no hits.

BS05967.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:36 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 1..297 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:57 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 152..465 7..323 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:10 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 166..460 17..311 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:36 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 152..465 7..323 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:44 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
CG10433-RB 166..460 17..311 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:44 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21606681..21606792 17..128 100   Minus
2R 21606328..21606360 279..311 100 <- Minus
2R 21606468..21606617 129..278 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:10 Download gff for BS05967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17494186..17494297 17..128 100   Minus
arm_2R 17493833..17493865 279..311 100 <- Minus
arm_2R 17493973..17494122 129..278 100 <- Minus

BS05967.pep Sequence

Translation from 16 to 312

> BS05967.pep
MSPRRSLLCCLLVSSILVLHQAQANIETNDVNDPSYYMLQGVRVYPNDRQ
CVMVGGLCVAESDCIEPTSNKGLCPTSAGEGVECCYELRSNPTPASHR*

BS05967.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-PB 98 CG10433-PB 1..98 1..98 529 100 Plus
CG10433-PC 127 CG10433-PC 1..96 1..96 485 93.8 Plus
CG10433-PA 127 CG10433-PA 1..96 1..96 485 93.8 Plus