Clone Sequence Records
BS05967.3prime Sequence
327 bp (326 high quality bases) assembled on 2005-12-03
> BS05967.3prime
ATGGTCTAGAAAGCTTTTAGCGATGCGAAGCAGGTGTTGGGTTTGATCGG
AGTTCGTAGCAGCACTCCACGCCCTCTCCGGCACTCGTGGGACACAATCC
CTTGTTCGAGGTGGGTTCGATGCAGTCCGACTCCGCGACACACAGTCCTC
CGACCATGACGCACTGTCGGTCATTGGGATACACACGCACACCCTGCAGC
ATGTAGTAACTGGGGTCATTCACATCGTTTGTCTCGATGTTGGCCTGAGC
CTGGTGCAGCACTAGGATGCTGCTCACCAGCAGGCAGCACAGCAAGCTCC
TTCTCGGCGACATGTCGACTGATAACT
BS05967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-PB | 297 | CG10433-RB | 1..297 | 313..17 | 1485 | 100 | Minus |
CG10433-PA | 384 | CG10433-RA | 1..263 | 313..51 | 1315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-RB | 1112 | CG10433-RB | 166..464 | 313..15 | 1495 | 100 | Minus |
CG10433-RC | 1945 | CG10433-RC | 1166..1440 | 313..40 | 1320 | 98.9 | Minus |
CG10433-RA | 945 | CG10433-RA | 166..440 | 313..40 | 1320 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21606468..21606617 | 52..201 | 750 | 100 | Plus |
2R | 25286936 | 2R | 21606681..21606792 | 202..313 | 560 | 100 | Plus |
2R | 25286936 | 2R | 21606324..21606360 | 15..51 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:36:10 has no hits.
BS05967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:25 Download gff for
BS05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-PB | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:44 Download gff for
BS05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-PB | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:05 Download gff for
BS05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 156..469 | 7..323 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:16 Download gff for
BS05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 156..469 | 7..323 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:16 Download gff for
BS05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21606319..21606360 | 7..51 | 91 | <- | Plus |
2R | 21606468..21606617 | 52..201 | 100 | <- | Plus |
2R | 21606681..21606802 | 202..323 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:05 Download gff for
BS05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17493824..17493865 | 7..51 | 91 | <- | Plus |
arm_2R | 17493973..17494122 | 52..201 | 100 | <- | Plus |
arm_2R | 17494186..17494307 | 202..323 | 96 | | Plus |
BS05967.5prime Sequence
327 bp (326 high quality bases) assembled on 2005-12-03
> BS05967.5prime
GAAGTTATCAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGC
TGGTGAGCAGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACA
AACGATGTGAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTA
TCCCAATGACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGT
CGGACTGCATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCC
GGAGAGGGCGTGGAGTGCTGCTACGAACTCCGATCAAACCCAACACCTGC
TTCGCATCGCTAAAAGCTTTCTAGACC
BS05967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-PB | 297 | CG10433-RB | 1..297 | 17..313 | 1485 | 100 | Plus |
CG10433-PA | 384 | CG10433-RA | 1..263 | 17..279 | 1315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-RB | 1112 | CG10433-RB | 166..464 | 17..315 | 1495 | 100 | Plus |
CG10433-RC | 1945 | CG10433-RC | 1166..1440 | 17..290 | 1320 | 98.9 | Plus |
CG10433-RA | 945 | CG10433-RA | 166..440 | 17..290 | 1320 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21606468..21606617 | 278..129 | 750 | 100 | Minus |
2R | 25286936 | 2R | 21606681..21606792 | 128..17 | 560 | 100 | Minus |
2R | 25286936 | 2R | 21606324..21606360 | 315..279 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:26:21 has no hits.
BS05967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:26 Download gff for
BS05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-PB | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:45 Download gff for
BS05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-PB | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:22 Download gff for
BS05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 156..469 | 7..323 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:34 Download gff for
BS05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 156..469 | 7..323 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:34 Download gff for
BS05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21606319..21606360 | 279..323 | 91 | <- | Minus |
2R | 21606468..21606617 | 129..278 | 100 | <- | Minus |
2R | 21606681..21606802 | 7..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:22 Download gff for
BS05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17493824..17493865 | 279..323 | 91 | <- | Minus |
arm_2R | 17493973..17494122 | 129..278 | 100 | <- | Minus |
arm_2R | 17494186..17494307 | 7..128 | 96 | | Minus |
BS05967.complete Sequence
329 bp (329 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635308
> BS05967.complete
GAAGTTATCAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGC
TGGTGAGCAGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACA
AACGATGTGAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTA
TCCCAATGACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGT
CGGACTGCATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCC
GGAGAGGGCGTGGAGTGCTGCTACGAACTCCGATCAAACCCAACACCTGC
TTCGCATCGCTAAAAGCTTTCTAGACCAT
BS05967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-RB | 297 | CG10433-PB | 1..297 | 17..313 | 1485 | 100 | Plus |
CG10433-RC | 384 | CG10433-PC | 1..263 | 17..279 | 1315 | 100 | Plus |
CG10433-RA | 384 | CG10433-PA | 1..263 | 17..279 | 1315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-RB | 1112 | CG10433-RB | 166..464 | 17..315 | 1495 | 100 | Plus |
CG10433-RC | 1945 | CG10433-RC | 1166..1428 | 17..279 | 1315 | 100 | Plus |
CG10433-RA | 945 | CG10433-RA | 166..428 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21606468..21606617 | 278..129 | 750 | 100 | Minus |
2R | 25286936 | 2R | 21606681..21606792 | 128..17 | 560 | 100 | Minus |
2R | 25286936 | 2R | 21606324..21606360 | 315..279 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:53 has no hits.
BS05967.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:36 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:57 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 152..465 | 7..323 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:10 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 166..460 | 17..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:36 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 152..465 | 7..323 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:44 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10433-RB | 166..460 | 17..311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:44 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21606681..21606792 | 17..128 | 100 | | Minus |
2R | 21606328..21606360 | 279..311 | 100 | <- | Minus |
2R | 21606468..21606617 | 129..278 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:10 Download gff for
BS05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17494186..17494297 | 17..128 | 100 | | Minus |
arm_2R | 17493833..17493865 | 279..311 | 100 | <- | Minus |
arm_2R | 17493973..17494122 | 129..278 | 100 | <- | Minus |
BS05967.pep Sequence
Translation from 16 to 312
> BS05967.pep
MSPRRSLLCCLLVSSILVLHQAQANIETNDVNDPSYYMLQGVRVYPNDRQ
CVMVGGLCVAESDCIEPTSNKGLCPTSAGEGVECCYELRSNPTPASHR*
BS05967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10433-PB | 98 | CG10433-PB | 1..98 | 1..98 | 529 | 100 | Plus |
CG10433-PC | 127 | CG10433-PC | 1..96 | 1..96 | 485 | 93.8 | Plus |
CG10433-PA | 127 | CG10433-PA | 1..96 | 1..96 | 485 | 93.8 | Plus |