Clone BS05968 Report

Search the DGRC for BS05968

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptmri-RC
Protein status:BS05968.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05968.3prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-03

> BS05968.3prime
ATGGTCTAGAAAGCTTCTACATATTTTCATCAACTATTCCGACGGCAACA
GCGATCGCTGCCTGGTCCAACTCGTTGAGCATTACAACGCCCCCGGCCGC
CTCGTCGACGGCTACCACGACTGCTGGACCAGCCACGCCTATAGCTGCGG
GTGCGACGGCCATACCGGCAGCGAGCTCAGCGTTATTGGGATGCGGATTA
GCCACTGCTATAGGGGGAATCGGATTTCCACTTGCGTCCAATTCCAGTGG
CGGATCTGCATTTGCTTCCGCTAGATTCGTTACAGACTTGGATTTTACAC
ATTGGAAATCAACATGGCGACTCTTTGCTTCCTCCTTCTCCCAGGACATG
TGGATGAAAGGTCGCTGCACATAGCTGTAGATGACTTCAGCCCGTCCACC
GGGACGCCTTCGGATCTTCTCTTTGTGGGTGGGGTATCCCTCTATGCCAC
AGCGTATCTTCTTCAGACCGCGATCCTTCATCACCTGTTTGGCCACATCG
CGGTTCTCGATGTACTTGAAGAATCGGTGCATGGCAGTGCTGTGCACGGT
CTGACAATACTCCTCGCCCATCTGAGGCGGAAACTCTTCATCCCACTCGA
CCATATCGTCTTCAAGGAGCACCACAACGTGACACTCTCGATCCCCGCGC
TGCGCCGAGGCCACCATGTCGACTGATAACT

BS05968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1216-PB 1320 mri-RB 669..1320 668..17 3260 100 Minus
CG1216-PA 1320 mri-RA 669..1320 668..17 3260 100 Minus
CG1216-PC 651 mri-RC 1..651 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1736 CG1216-RE 964..1616 668..16 3265 100 Minus
mri-RA 1739 CG1216-RA 967..1619 668..16 3265 100 Minus
mri-RB 1647 CG1216-RB 875..1527 668..16 3265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 201441..201761 549..229 1605 100 Minus
3L 28110227 3L 201817..202032 231..16 1080 100 Minus
3L 28110227 3L 201250..201368 668..550 595 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:47:52 has no hits.

BS05968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:27 Download gff for BS05968.3prime
Subject Subject Range Query Range Percent Splice Strand
mri-PB 669..1320 17..668 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:47 Download gff for BS05968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1216-PA 669..1320 17..668 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:00 Download gff for BS05968.3prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1527 16..668 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:34 Download gff for BS05968.3prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1527 16..668 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:34 Download gff for BS05968.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 201250..201368 550..668 100 -> Minus
3L 201441..201758 232..549 100 -> Minus
3L 201817..202032 16..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:00 Download gff for BS05968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 201250..201368 550..668 100 -> Minus
arm_3L 201441..201758 232..549 100 -> Minus
arm_3L 201817..202032 16..231 100   Minus

BS05968.5prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-03

> BS05968.5prime
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGTAGAAGCTTTCTAGACC

BS05968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1216-PB 1320 mri-RB 669..1320 16..667 3260 100 Plus
CG1216-PA 1320 mri-RA 669..1320 16..667 3260 100 Plus
CG1216-PC 651 mri-RC 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1736 CG1216-RE 964..1616 16..668 3265 100 Plus
mri-RA 1739 CG1216-RA 967..1619 16..668 3265 100 Plus
mri-RB 1647 CG1216-RB 875..1527 16..668 3265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 201441..201761 135..455 1605 100 Plus
3L 28110227 3L 201817..202032 453..668 1080 100 Plus
3L 28110227 3L 201250..201368 16..134 595 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:13:24 has no hits.

BS05968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:28 Download gff for BS05968.5prime
Subject Subject Range Query Range Percent Splice Strand
mri-PB 669..1320 16..667 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:48 Download gff for BS05968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1216-PA 669..1320 16..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:25 Download gff for BS05968.5prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1527 16..668 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:36 Download gff for BS05968.5prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1527 16..668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:36 Download gff for BS05968.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 201441..201758 135..452 100 -> Plus
3L 201817..202032 453..668 100   Plus
3L 201250..201368 16..134 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:25 Download gff for BS05968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 201250..201368 16..134 100 -> Plus
arm_3L 201441..201758 135..452 100 -> Plus
arm_3L 201817..202032 453..668 100   Plus

BS05968.complete Sequence

683 bp (683 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638788

> BS05968.complete
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGTAGAAGCTTTCTAGACCAT

BS05968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1317 CG1216-PE 666..1317 16..667 3260 100 Plus
mri-RA 1320 CG1216-PA 669..1320 16..667 3260 100 Plus
mri-RB 1320 CG1216-PB 669..1320 16..667 3260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1736 CG1216-RE 964..1616 16..668 3265 100 Plus
mri-RA 1739 CG1216-RA 967..1619 16..668 3265 100 Plus
mri-RB 1647 CG1216-RB 875..1527 16..668 3265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 201441..201761 135..455 1605 100 Plus
3L 28110227 3L 201817..202032 453..668 1080 100 Plus
3L 28110227 3L 201250..201368 16..134 595 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:13:04 has no hits.

BS05968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:36 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RA 669..1320 16..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:49 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RC 130..782 16..668 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:11 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RB 876..1526 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:37 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RC 130..782 16..668 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:52 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RB 876..1526 17..667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:52 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
3L 201817..202031 453..667 100   Plus
3L 201441..201758 135..452 100 -> Plus
3L 201251..201368 17..134 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:11 Download gff for BS05968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 201251..201368 17..134 100 -> Plus
arm_3L 201441..201758 135..452 100 -> Plus
arm_3L 201817..202031 453..667 100   Plus

BS05968.pep Sequence

Translation from 16 to 666

> BS05968.pep
MVASAQRGDRECHVVVLLEDDMVEWDEEFPPQMGEEYCQTVHSTAMHRFF
KYIENRDVAKQVMKDRGLKKIRCGIEGYPTHKEKIRRRPGGRAEVIYSYV
QRPFIHMSWEKEEAKSRHVDFQCVKSKSVTNLAEANADPPLELDASGNPI
PPIAVANPHPNNAELAAGMAVAPAAIGVAGPAVVVAVDEAAGGVVMLNEL
DQAAIAVAVGIVDENM*

BS05968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
mri-PE 438 CG1216-PE 223..438 1..216 1126 100 Plus
mri-PA 439 CG1216-PA 224..439 1..216 1126 100 Plus
mri-PB 439 CG1216-PB 224..439 1..216 1126 100 Plus