Clone Sequence Records
BS05968.3prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-03
> BS05968.3prime
ATGGTCTAGAAAGCTTCTACATATTTTCATCAACTATTCCGACGGCAACA
GCGATCGCTGCCTGGTCCAACTCGTTGAGCATTACAACGCCCCCGGCCGC
CTCGTCGACGGCTACCACGACTGCTGGACCAGCCACGCCTATAGCTGCGG
GTGCGACGGCCATACCGGCAGCGAGCTCAGCGTTATTGGGATGCGGATTA
GCCACTGCTATAGGGGGAATCGGATTTCCACTTGCGTCCAATTCCAGTGG
CGGATCTGCATTTGCTTCCGCTAGATTCGTTACAGACTTGGATTTTACAC
ATTGGAAATCAACATGGCGACTCTTTGCTTCCTCCTTCTCCCAGGACATG
TGGATGAAAGGTCGCTGCACATAGCTGTAGATGACTTCAGCCCGTCCACC
GGGACGCCTTCGGATCTTCTCTTTGTGGGTGGGGTATCCCTCTATGCCAC
AGCGTATCTTCTTCAGACCGCGATCCTTCATCACCTGTTTGGCCACATCG
CGGTTCTCGATGTACTTGAAGAATCGGTGCATGGCAGTGCTGTGCACGGT
CTGACAATACTCCTCGCCCATCTGAGGCGGAAACTCTTCATCCCACTCGA
CCATATCGTCTTCAAGGAGCACCACAACGTGACACTCTCGATCCCCGCGC
TGCGCCGAGGCCACCATGTCGACTGATAACT
BS05968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1216-PB | 1320 | mri-RB | 669..1320 | 668..17 | 3260 | 100 | Minus |
CG1216-PA | 1320 | mri-RA | 669..1320 | 668..17 | 3260 | 100 | Minus |
CG1216-PC | 651 | mri-RC | 1..651 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1736 | CG1216-RE | 964..1616 | 668..16 | 3265 | 100 | Minus |
mri-RA | 1739 | CG1216-RA | 967..1619 | 668..16 | 3265 | 100 | Minus |
mri-RB | 1647 | CG1216-RB | 875..1527 | 668..16 | 3265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 201441..201761 | 549..229 | 1605 | 100 | Minus |
3L | 28110227 | 3L | 201817..202032 | 231..16 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 201250..201368 | 668..550 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:47:52 has no hits.
BS05968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:27 Download gff for
BS05968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-PB | 669..1320 | 17..668 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:47 Download gff for
BS05968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1216-PA | 669..1320 | 17..668 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:00 Download gff for
BS05968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1527 | 16..668 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:34 Download gff for
BS05968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1527 | 16..668 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:34 Download gff for
BS05968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 201250..201368 | 550..668 | 100 | -> | Minus |
3L | 201441..201758 | 232..549 | 100 | -> | Minus |
3L | 201817..202032 | 16..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:00 Download gff for
BS05968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 201250..201368 | 550..668 | 100 | -> | Minus |
arm_3L | 201441..201758 | 232..549 | 100 | -> | Minus |
arm_3L | 201817..202032 | 16..231 | 100 | | Minus |
BS05968.5prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-03
> BS05968.5prime
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGTAGAAGCTTTCTAGACC
BS05968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1216-PB | 1320 | mri-RB | 669..1320 | 16..667 | 3260 | 100 | Plus |
CG1216-PA | 1320 | mri-RA | 669..1320 | 16..667 | 3260 | 100 | Plus |
CG1216-PC | 651 | mri-RC | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1736 | CG1216-RE | 964..1616 | 16..668 | 3265 | 100 | Plus |
mri-RA | 1739 | CG1216-RA | 967..1619 | 16..668 | 3265 | 100 | Plus |
mri-RB | 1647 | CG1216-RB | 875..1527 | 16..668 | 3265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 201441..201761 | 135..455 | 1605 | 100 | Plus |
3L | 28110227 | 3L | 201817..202032 | 453..668 | 1080 | 100 | Plus |
3L | 28110227 | 3L | 201250..201368 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:13:24 has no hits.
BS05968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:28 Download gff for
BS05968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-PB | 669..1320 | 16..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:48 Download gff for
BS05968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1216-PA | 669..1320 | 16..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:25 Download gff for
BS05968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1527 | 16..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:36 Download gff for
BS05968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1527 | 16..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:36 Download gff for
BS05968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 201441..201758 | 135..452 | 100 | -> | Plus |
3L | 201817..202032 | 453..668 | 100 | | Plus |
3L | 201250..201368 | 16..134 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:25 Download gff for
BS05968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 201250..201368 | 16..134 | 100 | -> | Plus |
arm_3L | 201441..201758 | 135..452 | 100 | -> | Plus |
arm_3L | 201817..202032 | 453..668 | 100 | | Plus |
BS05968.complete Sequence
683 bp (683 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638788
> BS05968.complete
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGTAGAAGCTTTCTAGACCAT
BS05968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1317 | CG1216-PE | 666..1317 | 16..667 | 3260 | 100 | Plus |
mri-RA | 1320 | CG1216-PA | 669..1320 | 16..667 | 3260 | 100 | Plus |
mri-RB | 1320 | CG1216-PB | 669..1320 | 16..667 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1736 | CG1216-RE | 964..1616 | 16..668 | 3265 | 100 | Plus |
mri-RA | 1739 | CG1216-RA | 967..1619 | 16..668 | 3265 | 100 | Plus |
mri-RB | 1647 | CG1216-RB | 875..1527 | 16..668 | 3265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 201441..201761 | 135..455 | 1605 | 100 | Plus |
3L | 28110227 | 3L | 201817..202032 | 453..668 | 1080 | 100 | Plus |
3L | 28110227 | 3L | 201250..201368 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:13:04 has no hits.
BS05968.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:36 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RA | 669..1320 | 16..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:49 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RC | 130..782 | 16..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:11 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 876..1526 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:37 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RC | 130..782 | 16..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:52 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 876..1526 | 17..667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:52 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 201817..202031 | 453..667 | 100 | | Plus |
3L | 201441..201758 | 135..452 | 100 | -> | Plus |
3L | 201251..201368 | 17..134 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:11 Download gff for
BS05968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 201251..201368 | 17..134 | 100 | -> | Plus |
arm_3L | 201441..201758 | 135..452 | 100 | -> | Plus |
arm_3L | 201817..202031 | 453..667 | 100 | | Plus |
BS05968.pep Sequence
Translation from 16 to 666
> BS05968.pep
MVASAQRGDRECHVVVLLEDDMVEWDEEFPPQMGEEYCQTVHSTAMHRFF
KYIENRDVAKQVMKDRGLKKIRCGIEGYPTHKEKIRRRPGGRAEVIYSYV
QRPFIHMSWEKEEAKSRHVDFQCVKSKSVTNLAEANADPPLELDASGNPI
PPIAVANPHPNNAELAAGMAVAPAAIGVAGPAVVVAVDEAAGGVVMLNEL
DQAAIAVAVGIVDENM*
BS05968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-PE | 438 | CG1216-PE | 223..438 | 1..216 | 1126 | 100 | Plus |
mri-PA | 439 | CG1216-PA | 224..439 | 1..216 | 1126 | 100 | Plus |
mri-PB | 439 | CG1216-PB | 224..439 | 1..216 | 1126 | 100 | Plus |