Clone BS05969 Report

Search the DGRC for BS05969

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG13890-RA
Protein status:BS05969.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05969.3prime Sequence

819 bp (812 high quality bases) assembled on 2005-12-03

> BS05969.3prime
ATGGTCTAGAAAGCTTTTATAATTTCGCCTTGTTTTTACGGCTGGCAAAG
TCTATGATGGCCTGGGCAAACTCGGGATGCTGGAACTGTTGGAGCAGCTG
CTTGCACTCCGCCTCGTTGGCCTTGATGAGATTCTCCAGGAAGCCATCCT
TGACGAGGCGTTTCCCCTGCAGAAGGGAGTTCGTCGGCAGCTCGGAATAC
TGACGCAATTTGGGCCAAATCACCGACTCCAATTCGCTGGCCTTGAAGAT
CCTCGAAACAAAGTTGAACTGATATGCCTCCTGGGCGCTCAGCGGTTCGC
TTAGCAGCAGGATTTCCGACGCCTTTGAGCGCCCCAAGATGAGGGGCAGC
ATATAGGAGGAACCGCCCTCTGGCACCAATCCCAGTTTGGTGAATGGCGT
GTAGAAGTAGGTCGTTTCGGAGCACCAAGCCACATCGCACAATCCCACAA
TGGTGGCTCCAATCCCAATGGCAGGTCCGTTCACCAGGGCAAGCACAATC
TTTCTGCAGTTGACGAAGCTCAGAACCATGGCCTTGAAAGTCGCATTGGA
CTGCTTGAAGAAGGCGTCGATGTCATCGGTATTGGAGGATTGGGACAAGT
CGTTGCCGGACGTAAAGATGTCACCCACGCCGGTGAAAACCACAATGGTT
ACGCCCTCATCGTCGTTGACCTCGGTCAACACACGGGTCATCTCCTGGTA
GGCGACCCTGTTGATGCAGTTCTTCTTCTTCGGATTGTTGAACTTGGCCA
CGAGCAGCTTGCCCTGCTGCTCCACAAGCAGTTCCTTGTATCCTTGGTAG
GTCATGTCGACTGATAACT

BS05969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-PA 789 CG13890-RA 1..789 805..17 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-RA 1210 CG13890-RA 97..886 805..16 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 851952..852349 413..16 1990 100 Minus
3L 28110227 3L 851442..851715 805..532 1370 100 Minus
3L 28110227 3L 851771..851893 535..413 615 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:23:35 has no hits.

BS05969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:29 Download gff for BS05969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:49 Download gff for BS05969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:13 Download gff for BS05969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 90..886 16..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:56 Download gff for BS05969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 90..886 16..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:56 Download gff for BS05969.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 851435..851714 533..813 98 -> Minus
3L 851774..851893 413..532 100 -> Minus
3L 851953..852349 16..412 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:13 Download gff for BS05969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 851435..851714 533..813 98 -> Minus
arm_3L 851774..851893 413..532 100 -> Minus
arm_3L 851953..852349 16..412 100   Minus

BS05969.5prime Sequence

819 bp (783 high quality bases) assembled on 2005-12-03

> BS05969.5prime
GAAGTTATCAGTCGACATGACCTACCAAGGATACAAGGAACTGCTTGTGG
AGCAGCAGGGCAAGCTGCTCGTGGCCAAGTTCAACAATCCGAAGAAGAAG
AACTGCATCAACAGGGTCGCCTACCAGGAGATGACCCGTGTGTTGACCGA
GGTCAACGACGATGAGGGCGTAACCATTGTGGTTTTCACCGGCGTGGGTG
ACATCTTTACGTCCGGCAACGACTTGTCCCAATCCTCCAATACCGATGAC
ATCGACGCCTTCTTCAAGCAGTCCAATGCGACTTTCAAGGCCATGGTTCT
GAGCTTCGTCAACTGCAGAAAGATTGTGCTTGCCCTGGTGAACGGACCTG
CCATTGGGATTGGAGCCACCATTGTGGGATTGTGCGATGTGGCTTGGTGC
TCCGAAACGACCTACTTCTACACGCCATTCACCAAACTGGGATTGGTGCC
AGAGGGCGGTTCCTCCTATATGCTGCCCCTCATCTTGGGGCGCTCAAAGG
CGTCGGAAATCCTGCTGCTAAGCGAACCGCTGAGCGCCCAGGAGGCATAT
CAGTTCAACTTTGTTTCGAGGATCTTCAAGGCCAGCGAATTGGAGTCGGT
GATTTGGCCCAAATTGCGTCAGTATTCCGAGCTGCCGACGAACTCCCTTC
TGCAGGGGAAACGCCTCGTCAAGGATGGCTTCCTGGAGAATCTCATCAAG
GCCAACGAGGCGGAGTGCAAGCAGCTGCTCCAACAGTTCCAGCATCCCGA
GTTTGCCCAGGCCATCATAGACTTTGCCAGCCGTAAAAACAAGGCGAAAT
TATAAAAGCTTTCTAGACC

BS05969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-PA 789 CG13890-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-RA 1210 CG13890-RA 97..886 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 851952..852349 409..806 1990 100 Plus
3L 28110227 3L 851442..851715 17..290 1370 100 Plus
3L 28110227 3L 851771..851893 287..409 615 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:11:55 has no hits.

BS05969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:30 Download gff for BS05969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:51 Download gff for BS05969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:01 Download gff for BS05969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 90..886 9..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:57 Download gff for BS05969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 90..886 9..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:57 Download gff for BS05969.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 851435..851714 9..289 98 -> Plus
3L 851774..851893 290..409 100 -> Plus
3L 851953..852349 410..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:01 Download gff for BS05969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 851435..851714 9..289 98 -> Plus
arm_3L 851774..851893 290..409 100 -> Plus
arm_3L 851953..852349 410..806 100   Plus

BS05969.complete Sequence

821 bp (821 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635309

> BS05969.complete
GAAGTTATCAGTCGACATGACCTACCAAGGATACAAGGAACTGCTTGTGG
AGCAGCAGGGCAAGCTGCTCGTGGCCAAGTTCAACAATCCGAAGAAGAAG
AACTGCATCAACAGGGTCGCCTACCAGGAGATGACCCGTGTGTTGACCGA
GGTCAACGACGATGAGGGCGTAACCATTGTGGTTTTCACCGGCGTGGGTG
ACATCTTTACGTCCGGCAACGACTTGTCCCAATCCTCCAATACCGATGAC
ATCGACGCCTTCTTCAAGCAGTCCAATGCGACTTTCAAGGCCATGGTTCT
GAGCTTCGTCAACTGCAGAAAGATTGTGCTTGCCCTGGTGAACGGACCTG
CCATTGGGATTGGAGCCACCATTGTGGGATTGTGCGATGTGGCTTGGTGC
TCCGAAACGACCTACTTCTACACGCCATTCACCAAACTGGGATTGGTGCC
AGAGGGCGGTTCCTCCTATATGCTGCCCCTCATCTTGGGGCGCTCAAAGG
CGTCGGAAATCCTGCTGCTAAGCGAACCGCTGAGCGCCCAGGAGGCATAT
CAGTTCAACTTTGTTTCGAGGATCTTCAAGGCCAGCGAATTGGAGTCGGT
GATTTGGCCCAAATTGCGTCAGTATTCCGAGCTGCCGACGAACTCCCTTC
TGCAGGGGAAACGCCTCGTCAAGGATGGCTTCCTGGAGAATCTCATCAAG
GCCAACGAGGCGGAGTGCAAGCAGCTGCTCCAACAGTTCCAGCATCCCGA
GTTTGCCCAGGCCATCATAGACTTTGCCAGCCGTAAAAACAAGGCGAAAT
TATAAAAGCTTTCTAGACCAT

BS05969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-RA 789 CG13890-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-RA 1210 CG13890-RA 97..886 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 851952..852349 409..806 1990 100 Plus
3L 28110227 3L 851442..851715 17..290 1370 100 Plus
3L 28110227 3L 851771..851893 287..409 615 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:52:38 has no hits.

BS05969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:38 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:50 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 117..913 9..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:32 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 97..883 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:38 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 117..913 9..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:51 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
CG13890-RA 97..883 17..803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:51 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 851442..851714 17..289 100 -> Plus
3L 851774..851893 290..409 100 -> Plus
3L 851953..852346 410..803 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:32 Download gff for BS05969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 851442..851714 17..289 100 -> Plus
arm_3L 851774..851893 290..409 100 -> Plus
arm_3L 851953..852346 410..803 100   Plus

BS05969.pep Sequence

Translation from 16 to 804

> BS05969.pep
MTYQGYKELLVEQQGKLLVAKFNNPKKKNCINRVAYQEMTRVLTEVNDDE
GVTIVVFTGVGDIFTSGNDLSQSSNTDDIDAFFKQSNATFKAMVLSFVNC
RKIVLALVNGPAIGIGATIVGLCDVAWCSETTYFYTPFTKLGLVPEGGSS
YMLPLILGRSKASEILLLSEPLSAQEAYQFNFVSRIFKASELESVIWPKL
RQYSELPTNSLLQGKRLVKDGFLENLIKANEAECKQLLQQFQHPEFAQAI
IDFASRKNKAKL*

BS05969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13890-PA 262 CG13890-PA 1..262 1..262 1334 100 Plus
CG6543-PA 295 CG6543-PA 40..223 6..192 193 26.1 Plus
CG6543-PB 295 CG6543-PB 40..223 6..192 193 26.1 Plus
CG8778-PA 299 CG8778-PA 36..250 8..219 168 25.7 Plus
CG5844-PA 378 CG5844-PA 47..226 7..186 155 22.8 Plus