Clone Sequence Records
BS05969.3prime Sequence
819 bp (812 high quality bases) assembled on 2005-12-03
> BS05969.3prime
ATGGTCTAGAAAGCTTTTATAATTTCGCCTTGTTTTTACGGCTGGCAAAG
TCTATGATGGCCTGGGCAAACTCGGGATGCTGGAACTGTTGGAGCAGCTG
CTTGCACTCCGCCTCGTTGGCCTTGATGAGATTCTCCAGGAAGCCATCCT
TGACGAGGCGTTTCCCCTGCAGAAGGGAGTTCGTCGGCAGCTCGGAATAC
TGACGCAATTTGGGCCAAATCACCGACTCCAATTCGCTGGCCTTGAAGAT
CCTCGAAACAAAGTTGAACTGATATGCCTCCTGGGCGCTCAGCGGTTCGC
TTAGCAGCAGGATTTCCGACGCCTTTGAGCGCCCCAAGATGAGGGGCAGC
ATATAGGAGGAACCGCCCTCTGGCACCAATCCCAGTTTGGTGAATGGCGT
GTAGAAGTAGGTCGTTTCGGAGCACCAAGCCACATCGCACAATCCCACAA
TGGTGGCTCCAATCCCAATGGCAGGTCCGTTCACCAGGGCAAGCACAATC
TTTCTGCAGTTGACGAAGCTCAGAACCATGGCCTTGAAAGTCGCATTGGA
CTGCTTGAAGAAGGCGTCGATGTCATCGGTATTGGAGGATTGGGACAAGT
CGTTGCCGGACGTAAAGATGTCACCCACGCCGGTGAAAACCACAATGGTT
ACGCCCTCATCGTCGTTGACCTCGGTCAACACACGGGTCATCTCCTGGTA
GGCGACCCTGTTGATGCAGTTCTTCTTCTTCGGATTGTTGAACTTGGCCA
CGAGCAGCTTGCCCTGCTGCTCCACAAGCAGTTCCTTGTATCCTTGGTAG
GTCATGTCGACTGATAACT
BS05969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-PA | 789 | CG13890-RA | 1..789 | 805..17 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-RA | 1210 | CG13890-RA | 97..886 | 805..16 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 851952..852349 | 413..16 | 1990 | 100 | Minus |
3L | 28110227 | 3L | 851442..851715 | 805..532 | 1370 | 100 | Minus |
3L | 28110227 | 3L | 851771..851893 | 535..413 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:23:35 has no hits.
BS05969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:29 Download gff for
BS05969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:49 Download gff for
BS05969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:13 Download gff for
BS05969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 90..886 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:56 Download gff for
BS05969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 90..886 | 16..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:56 Download gff for
BS05969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 851435..851714 | 533..813 | 98 | -> | Minus |
3L | 851774..851893 | 413..532 | 100 | -> | Minus |
3L | 851953..852349 | 16..412 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:13 Download gff for
BS05969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 851435..851714 | 533..813 | 98 | -> | Minus |
arm_3L | 851774..851893 | 413..532 | 100 | -> | Minus |
arm_3L | 851953..852349 | 16..412 | 100 | | Minus |
BS05969.5prime Sequence
819 bp (783 high quality bases) assembled on 2005-12-03
> BS05969.5prime
GAAGTTATCAGTCGACATGACCTACCAAGGATACAAGGAACTGCTTGTGG
AGCAGCAGGGCAAGCTGCTCGTGGCCAAGTTCAACAATCCGAAGAAGAAG
AACTGCATCAACAGGGTCGCCTACCAGGAGATGACCCGTGTGTTGACCGA
GGTCAACGACGATGAGGGCGTAACCATTGTGGTTTTCACCGGCGTGGGTG
ACATCTTTACGTCCGGCAACGACTTGTCCCAATCCTCCAATACCGATGAC
ATCGACGCCTTCTTCAAGCAGTCCAATGCGACTTTCAAGGCCATGGTTCT
GAGCTTCGTCAACTGCAGAAAGATTGTGCTTGCCCTGGTGAACGGACCTG
CCATTGGGATTGGAGCCACCATTGTGGGATTGTGCGATGTGGCTTGGTGC
TCCGAAACGACCTACTTCTACACGCCATTCACCAAACTGGGATTGGTGCC
AGAGGGCGGTTCCTCCTATATGCTGCCCCTCATCTTGGGGCGCTCAAAGG
CGTCGGAAATCCTGCTGCTAAGCGAACCGCTGAGCGCCCAGGAGGCATAT
CAGTTCAACTTTGTTTCGAGGATCTTCAAGGCCAGCGAATTGGAGTCGGT
GATTTGGCCCAAATTGCGTCAGTATTCCGAGCTGCCGACGAACTCCCTTC
TGCAGGGGAAACGCCTCGTCAAGGATGGCTTCCTGGAGAATCTCATCAAG
GCCAACGAGGCGGAGTGCAAGCAGCTGCTCCAACAGTTCCAGCATCCCGA
GTTTGCCCAGGCCATCATAGACTTTGCCAGCCGTAAAAACAAGGCGAAAT
TATAAAAGCTTTCTAGACC
BS05969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-PA | 789 | CG13890-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-RA | 1210 | CG13890-RA | 97..886 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 851952..852349 | 409..806 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 851442..851715 | 17..290 | 1370 | 100 | Plus |
3L | 28110227 | 3L | 851771..851893 | 287..409 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:11:55 has no hits.
BS05969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:30 Download gff for
BS05969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:51 Download gff for
BS05969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:01 Download gff for
BS05969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 90..886 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:57 Download gff for
BS05969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 90..886 | 9..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:57 Download gff for
BS05969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 851435..851714 | 9..289 | 98 | -> | Plus |
3L | 851774..851893 | 290..409 | 100 | -> | Plus |
3L | 851953..852349 | 410..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:01 Download gff for
BS05969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 851435..851714 | 9..289 | 98 | -> | Plus |
arm_3L | 851774..851893 | 290..409 | 100 | -> | Plus |
arm_3L | 851953..852349 | 410..806 | 100 | | Plus |
BS05969.complete Sequence
821 bp (821 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635309
> BS05969.complete
GAAGTTATCAGTCGACATGACCTACCAAGGATACAAGGAACTGCTTGTGG
AGCAGCAGGGCAAGCTGCTCGTGGCCAAGTTCAACAATCCGAAGAAGAAG
AACTGCATCAACAGGGTCGCCTACCAGGAGATGACCCGTGTGTTGACCGA
GGTCAACGACGATGAGGGCGTAACCATTGTGGTTTTCACCGGCGTGGGTG
ACATCTTTACGTCCGGCAACGACTTGTCCCAATCCTCCAATACCGATGAC
ATCGACGCCTTCTTCAAGCAGTCCAATGCGACTTTCAAGGCCATGGTTCT
GAGCTTCGTCAACTGCAGAAAGATTGTGCTTGCCCTGGTGAACGGACCTG
CCATTGGGATTGGAGCCACCATTGTGGGATTGTGCGATGTGGCTTGGTGC
TCCGAAACGACCTACTTCTACACGCCATTCACCAAACTGGGATTGGTGCC
AGAGGGCGGTTCCTCCTATATGCTGCCCCTCATCTTGGGGCGCTCAAAGG
CGTCGGAAATCCTGCTGCTAAGCGAACCGCTGAGCGCCCAGGAGGCATAT
CAGTTCAACTTTGTTTCGAGGATCTTCAAGGCCAGCGAATTGGAGTCGGT
GATTTGGCCCAAATTGCGTCAGTATTCCGAGCTGCCGACGAACTCCCTTC
TGCAGGGGAAACGCCTCGTCAAGGATGGCTTCCTGGAGAATCTCATCAAG
GCCAACGAGGCGGAGTGCAAGCAGCTGCTCCAACAGTTCCAGCATCCCGA
GTTTGCCCAGGCCATCATAGACTTTGCCAGCCGTAAAAACAAGGCGAAAT
TATAAAAGCTTTCTAGACCAT
BS05969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-RA | 789 | CG13890-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-RA | 1210 | CG13890-RA | 97..886 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 851952..852349 | 409..806 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 851442..851715 | 17..290 | 1370 | 100 | Plus |
3L | 28110227 | 3L | 851771..851893 | 287..409 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:52:38 has no hits.
BS05969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:38 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:50 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 117..913 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:32 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 97..883 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:38 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 117..913 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:51 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13890-RA | 97..883 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:51 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 851442..851714 | 17..289 | 100 | -> | Plus |
3L | 851774..851893 | 290..409 | 100 | -> | Plus |
3L | 851953..852346 | 410..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:32 Download gff for
BS05969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 851442..851714 | 17..289 | 100 | -> | Plus |
arm_3L | 851774..851893 | 290..409 | 100 | -> | Plus |
arm_3L | 851953..852346 | 410..803 | 100 | | Plus |
BS05969.pep Sequence
Translation from 16 to 804
> BS05969.pep
MTYQGYKELLVEQQGKLLVAKFNNPKKKNCINRVAYQEMTRVLTEVNDDE
GVTIVVFTGVGDIFTSGNDLSQSSNTDDIDAFFKQSNATFKAMVLSFVNC
RKIVLALVNGPAIGIGATIVGLCDVAWCSETTYFYTPFTKLGLVPEGGSS
YMLPLILGRSKASEILLLSEPLSAQEAYQFNFVSRIFKASELESVIWPKL
RQYSELPTNSLLQGKRLVKDGFLENLIKANEAECKQLLQQFQHPEFAQAI
IDFASRKNKAKL*
BS05969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13890-PA | 262 | CG13890-PA | 1..262 | 1..262 | 1334 | 100 | Plus |
CG6543-PA | 295 | CG6543-PA | 40..223 | 6..192 | 193 | 26.1 | Plus |
CG6543-PB | 295 | CG6543-PB | 40..223 | 6..192 | 193 | 26.1 | Plus |
CG8778-PA | 299 | CG8778-PA | 36..250 | 8..219 | 168 | 25.7 | Plus |
CG5844-PA | 378 | CG5844-PA | 47..226 | 7..186 | 155 | 22.8 | Plus |