Clone BS05970 Report

Search the DGRC for BS05970

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptIlp2-RA
Protein status:BS05970.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05970.5prime Sequence

444 bp (443 high quality bases) assembled on 2005-12-03

> BS05970.5prime
GAAGTTATCAGTCGACATGAGCAAGCCTTTGTCCTTCATCTCGATGGTGG
CCGTGATTTTGCTGGCCAGCTCCACAGTGAAGTTGGCCCAAGGAACGCTC
TGCAGTGAAAAGCTCAACGAGGTGCTGAGTATGGTGTGCGAGGAGTATAA
TCCCGTGATTCCACACAAGCGCGCCATGCCCGGTGCCGACAGCGATCTGG
ACGCCCTCAATCCCCTGCAGTTTGTCCAGGAGTTCGAGGAGGAGGATAAC
TCGATATCGGAACCGCTGCGAAGTGCCCTCTTTCCTGGGAGCTATCTTGG
GGGTGTACTCAATTCCCTGGCTGAAGTCCGGAGGCGAACTCGCCAACGGC
AAGGAATCGTGGAGAGGTGCTGCAAAAAGTCCTGTGATATGAAGGCTCTG
CGGGAGTACTGCTCCGTGGTCAGAAATTAGAAGCTTTCTAGACC

BS05970.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8167-PA 414 Ilp2-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 670 CG8167-RA 66..480 16..430 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9800000..9800250 180..430 1255 100 Plus
3L 28110227 3L 9799763..9799926 16..179 820 100 Plus
Blast to na_te.dros performed 2015-02-12 13:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4108..4145 193..230 109 76.3 Plus

BS05970.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:32 Download gff for BS05970.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:54 Download gff for BS05970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8167-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:09:40 Download gff for BS05970.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..488 9..440 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:53:52 Download gff for BS05970.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..488 9..440 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:53:52 Download gff for BS05970.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9799757..9799926 9..179 97 -> Plus
3L 9800000..9800258 180..440 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:09:40 Download gff for BS05970.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9792857..9793026 9..179 97 -> Plus
arm_3L 9793100..9793358 180..440 98   Plus

BS05970.3prime Sequence

444 bp (443 high quality bases) assembled on 2005-12-03

> BS05970.3prime
ATGGTCTAGAAAGCTTCTAATTTCTGACCACGGAGCAGTACTCCCGCAGA
GCCTTCATATCACAGGACTTTTTGCAGCACCTCTCCACGATTCCTTGCCG
TTGGCGAGTTCGCCTCCGGACTTCAGCCAGGGAATTGAGTACACCCCCAA
GATAGCTCCCAGGAAAGAGGGCACTTCGCAGCGGTTCCGATATCGAGTTA
TCCTCCTCCTCGAACTCCTGGACAAACTGCAGGGGATTGAGGGCGTCCAG
ATCGCTGTCGGCACCGGGCATGGCGCGCTTGTGTGGAATCACGGGATTAT
ACTCCTCGCACACCATACTCAGCACCTCGTTGAGCTTTTCACTGCAGAGC
GTTCCTTGGGCCAACTTCACTGTGGAGCTGGCCAGCAAAATCACGGCCAC
CATCGAGATGAAGGACAAAGGCTTGCTCATGTCGACTGATAACT

BS05970.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8167-PA 414 Ilp2-RA 1..414 430..17 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 670 CG8167-RA 66..480 431..17 2075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9800000..9800250 267..17 1255 100 Minus
3L 28110227 3L 9799763..9799926 431..268 820 100 Minus
Blast to na_te.dros performed 2015-02-10 18:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4108..4145 254..217 109 76.3 Minus

BS05970.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:31 Download gff for BS05970.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:01:52 Download gff for BS05970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8167-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:23 Download gff for BS05970.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..488 7..438 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:34:59 Download gff for BS05970.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..488 7..438 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:34:59 Download gff for BS05970.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9799757..9799926 268..438 97 -> Minus
3L 9800000..9800258 7..267 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:23 Download gff for BS05970.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9792857..9793026 268..438 97 -> Minus
arm_3L 9793100..9793358 7..267 98   Minus

BS05970.complete Sequence

446 bp (446 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635310

> BS05970.complete
GAAGTTATCAGTCGACATGAGCAAGCCTTTGTCCTTCATCTCGATGGTGG
CCGTGATTTTGCTGGCCAGCTCCACAGTGAAGTTGGCCCAAGGAACGCTC
TGCAGTGAAAAGCTCAACGAGGTGCTGAGTATGGTGTGCGAGGAGTATAA
TCCCGTGATTCCACACAAGCGCGCCATGCCCGGTGCCGACAGCGATCTGG
ACGCCCTCAATCCCCTGCAGTTTGTCCAGGAGTTCGAGGAGGAGGATAAC
TCGATATCGGAACCGCTGCGAAGTGCCCTCTTTCCTGGGAGCTATCTTGG
GGGTGTACTCAATTCCCTGGCTGAAGTCCGGAGGCGAACTCGCCAACGGC
AAGGAATCGTGGAGAGGTGCTGCAAAAAGTCCTGTGATATGAAGGCTCTG
CGGGAGTACTGCTCCGTGGTCAGAAATTAGAAGCTTTCTAGACCAT

BS05970.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 414 CG8167-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 670 CG8167-RA 66..480 16..430 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9800000..9800250 180..430 1255 100 Plus
3L 28110227 3L 9799763..9799926 16..179 820 100 Plus
Blast to na_te.dros performed 2014-11-28 01:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4108..4145 193..230 109 76.3 Plus

BS05970.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:39 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:26 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..488 9..440 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:28 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 67..480 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:39 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..488 9..440 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:41 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 67..480 17..430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:41 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9799764..9799926 17..179 100 -> Plus
3L 9800000..9800250 180..430 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:28 Download gff for BS05970.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9792864..9793026 17..179 100 -> Plus
arm_3L 9793100..9793350 180..430 100   Plus

BS05970.pep Sequence

Translation from 16 to 429

> BS05970.pep
MSKPLSFISMVAVILLASSTVKLAQGTLCSEKLNEVLSMVCEEYNPVIPH
KRAMPGADSDLDALNPLQFVQEFEEEDNSISEPLRSALFPGSYLGGVLNS
LAEVRRRTRQRQGIVERCCKKSCDMKALREYCSVVRN*

BS05970.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-PA 137 CG8167-PA 1..137 1..137 696 100 Plus