Clone Sequence Records
BS05983.3prime Sequence
855 bp (757 high quality bases) assembled on 2005-12-03
> BS05983.3prime
ATGGTCTAGAAAGCTTTTAGTTTTTAGTAGAATCCGTTTCGACTTCATCA
TTTCTTGCAGCTACAAAGTTGGCCACATCCACGGGAGTACCTGCATGGCT
GACCTCATCACCACCACCAACTTCTGTACCATCATCTGCACGACCAACAA
TATCGCCGGCAACGATGGGTGGCTCAGTGGTTATGGTGGGTTGGAAATTG
CCCGGATTGTGGGGTGGAGCTGGAAAGCAAACGACCCGTTCCACTTCTCG
CATCACCTCCGAGTTTTCGGGATCTGTTTCGTTTAGCATGATGGGAAAGC
AAATGATGCCACCATCTGGATAGGGCTGAGGAGTTGCCTCCGATTCCGTG
GATTCCTCACTGGAAACAGCTTCACTTCCTCCGTCACCTTCGCCCTGCCC
CTCTACGTCATCCTCCTCCGTTAGGGGATTTTCCGGGGGGACCACTGCGG
AGGATTCTCCTGAAATAGTGGTCTCATTGTGCAAAACTCCCTCCTGCTGA
CCATTGTTGACGATGATGATCTGTCGACCATTTCCCTGGGGCGACGACTG
GCCCTCCTCCGGATTTCTATGGTACGTATGGTGTCGGTGGCCAAACAGAA
CGTTGTTCATCATGTGACCCGCCAGCATTCCGGTGAGGAAATCTCCTGTA
CCGATTCCTCGATTCATTCCGACGGGTGGTTGGGCATAGTAAACCGCTCC
CGCTGGCAGGGCCTGGGCATTGGCGTAGTACGTTCCACTGCCTTGGCCCG
GATACGATCCAAAGCCATAGCCAGGTGGCATCTGCTGGCGAGGATAGCTG
GGGATTTGCTGCTTGGGCGGCATCATGGGCATCTTTGGTGGTGCCGGCGG
AGGCG
BS05983.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-PA | 1056 | CG31706-RA | 218..1056 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-RB | 1625 | CG31706-RB | 276..1114 | 855..17 | 4195 | 100 | Minus |
| CG31706-RA | 1139 | CG31706-RA | 276..1114 | 855..17 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11529549..11530184 | 17..652 | 3180 | 100 | Plus |
| 2L | 23513712 | 2L | 11530572..11530777 | 650..855 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:49:00 has no hits.
BS05983.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:55 Download gff for
BS05983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-PA | 218..1056 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:26 Download gff for
BS05983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-PA | 218..1056 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:57:56 Download gff for
BS05983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 276..1117 | 11..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:07 Download gff for
BS05983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 276..1117 | 11..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:07 Download gff for
BS05983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11529546..11530183 | 11..651 | 99 | <- | Plus |
| 2L | 11530574..11530777 | 652..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:57:56 Download gff for
BS05983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11529546..11530183 | 11..651 | 99 | <- | Plus |
| arm_2L | 11530574..11530777 | 652..855 | 100 | | Plus |
BS05983.5prime Sequence
828 bp (654 high quality bases) assembled on 2005-12-03
> BS05983.5prime
GAAGTTATCAGTCGACATGAAATCCTGGTACCTAGCACTCAGCCTGCTGC
TCCTCGCCGCATCCACAATTCAGCCCACTGACGCTCGTGGCGGAAGGGGG
CGTGGCGGCGGCTCATTTGGCGGACTCTTTGGCGGTTGGCGCAAGTACAA
GAAGCCCTCGTCGTCGGGCGGTGGTCGGCGGGTGGTGAGCGGTTCGCCAG
TTCACACGGCCATGACGGTGCCGAAACCACCACCGCCTCCGCCGGCACCA
CCAAAGATGCCCATGATGCCGCCCAAGCAGCAAATCCCCAGCTATCCTCG
CCAGCAGATGCCACCTGGCTATGGCTTTGGATCGTATCCGGGCCAAGGCA
GTGGAACGTACTACGCCAATGCCCAGGCCCTGCCAGCGGGAGCGGTTTAC
TATGCCCAACCACCCGTCGGAATGAATCGAGGAATCGGTACAGGAGATTT
CCTCACCGGAATGCTGGCGGGTCACATGATGAACAACGTTCTGTTTGGCC
ACCGACACCATACGTACCATAGAAATCCGGAGGAGGGCCAGTCGTCGCCC
CAGGGAAATGGTCGACAGATCATCATCGTCAACAATGGTCAGCAGGAGGG
AGTTTTGCACAATGAGACCACTATTTCAGGAGAATCCTCCGCAGTGGTCC
CCCCGGAAAATCCCCTAACGGAGGAGGATGACGTAGAGGGGCAGGGCGAA
GGTGACGGAGGAAGTGAAGCTGTTTCCAGTGAGGAATCCACGGAATCGGA
GGCAACTCCTCAGCCCTATCCAGATGGTGGCATCATTTGCTTTCCCATCA
TGCTAAACGAAACAGATCCCGAAAACTC
BS05983.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-PA | 1056 | CG31706-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-RB | 1625 | CG31706-RB | 59..870 | 17..828 | 4060 | 100 | Plus |
| CG31706-RA | 1139 | CG31706-RA | 59..870 | 17..828 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11530572..11530994 | 439..17 | 2115 | 100 | Minus |
| 2L | 23513712 | 2L | 11529793..11530184 | 828..437 | 1960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:13:24 has no hits.
BS05983.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:27:57 Download gff for
BS05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:27 Download gff for
BS05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:09:22 Download gff for
BS05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 51..870 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:43:57 Download gff for
BS05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 51..870 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:43:57 Download gff for
BS05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11529793..11530183 | 438..828 | 100 | <- | Minus |
| 2L | 11530574..11531002 | 9..437 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:09:22 Download gff for
BS05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11529793..11530183 | 438..828 | 100 | <- | Minus |
| arm_2L | 11530574..11531002 | 9..437 | 99 | | Minus |
BS05983.complete Sequence
1088 bp (1088 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635312
> BS05983.complete
GAAGTTATCAGTCGACATGAAATCCTGGTACCTAGCACTCAGCCTGCTGC
TCCTCGCCGCATCCACAATTCAGCCCACTGACGCTCGTGGCGGAAGGGGG
CGTGGCGGCGGCTCATTTGGCGGACTCTTTGGCGGTTGGCGCAAGTACAA
GAAGCCCTCGTCGTCGGGCGGTGGTCGGCGGGTGGTGAGCGGTTCGCCAG
TTCACACGGCCATGACGGTGCCGAAACCACCACCGCCTCCGCCGGCACCA
CCAAAGATGCCCATGATGCCGCCCAAGCAGCAAATCCCCAGCTATCCTCG
CCAGCAGATGCCACCTGGCTATGGCTTTGGATCGTATCCGGGCCAAGGCA
GTGGAACGTACTACGCCAATGCCCAGGCCCTGCCAGCGGGAGCGGTTTAC
TATGCCCAACCACCCGTCGGAATGAATCGAGGAATCGGTACAGGAGATTT
CCTCACCGGAATGCTGGCGGGTCACATGATGAACAACGTTCTGTTTGGCC
ACCGACACCATACGTACCATAGAAATCCGGAGGAGGGCCAGTCGTCGCCC
CAGGGAAATGGTCGACAGATCATCATCGTCAACAATGGTCAGCAGGAGGG
AGTTTTGCACAATGAGACCACTATTTCAGGAGAATCCTCCGCAGTGGTCC
CCCCGGAAAATCCCCTAACGGAGGAGGATGACGTAGAGGGGCAGGGCGAA
GGTGACGGAGGAAGTGAAGCTGTTTCCAGTGAGGAATCCACGGAATCGGA
GGCAACTCCTCAGCCCTATCCAGATGGTGGCATCATTTGCTTTCCCATCA
TGCTAAACGAAACAGATCCCGAAAACTCGGAGGTGATGCGAGAAGTGGAA
CGGGTCGTTTGCTTTCCAGCTCCACCCCACAATCCGGGCAATTTCCAACC
CACCATAACCACTGAGCCACCCATCGTTGCCGGCGATATTGTTGGTCGTG
CAGATGATGGTACAGAAGTTGGTGGTGGTGATGAGGTCAGCCATGCAGGT
ACTCCCGTGGATGTGGCCAACTTTGTAGCTGCAAGAAATGATGAAGTCGA
AACGGATTCTACTAAAAACTAAAAGCTTTCTAGACCAT
BS05983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-RB | 1056 | CG31706-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| CG31706-RA | 1056 | CG31706-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-RB | 1625 | CG31706-RB | 59..1114 | 17..1072 | 5280 | 100 | Plus |
| CG31706-RA | 1139 | CG31706-RA | 59..1114 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11529549..11530184 | 1072..437 | 3180 | 100 | Minus |
| 2L | 23513712 | 2L | 11530572..11530994 | 439..17 | 2115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:40 has no hits.
BS05983.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:18 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:28 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 48..1114 | 9..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:39 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 59..1105 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:18 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 48..1114 | 9..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:43 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31706-RA | 59..1105 | 17..1063 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:43 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11529558..11530183 | 438..1063 | 100 | <- | Minus |
| 2L | 11530574..11530994 | 17..437 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:39 Download gff for
BS05983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11529558..11530183 | 438..1063 | 100 | <- | Minus |
| arm_2L | 11530574..11530994 | 17..437 | 100 | | Minus |
BS05983.pep Sequence
Translation from 16 to 1071
> BS05983.pep
MKSWYLALSLLLLAASTIQPTDARGGRGRGGGSFGGLFGGWRKYKKPSSS
GGGRRVVSGSPVHTAMTVPKPPPPPPAPPKMPMMPPKQQIPSYPRQQMPP
GYGFGSYPGQGSGTYYANAQALPAGAVYYAQPPVGMNRGIGTGDFLTGML
AGHMMNNVLFGHRHHTYHRNPEEGQSSPQGNGRQIIIVNNGQQEGVLHNE
TTISGESSAVVPPENPLTEEDDVEGQGEGDGGSEAVSSEESTESEATPQP
YPDGGIICFPIMLNETDPENSEVMREVERVVCFPAPPHNPGNFQPTITTE
PPIVAGDIVGRADDGTEVGGGDEVSHAGTPVDVANFVAARNDEVETDSTK
N*
BS05983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31706-PB | 351 | CG31706-PB | 1..351 | 1..351 | 1895 | 100 | Plus |
| CG31706-PA | 351 | CG31706-PA | 1..351 | 1..351 | 1895 | 100 | Plus |
| CG5273-PB | 469 | CG5273-PB | 153..392 | 58..287 | 250 | 32.4 | Plus |
| CG5273-PC | 469 | CG5273-PC | 153..392 | 58..287 | 250 | 32.4 | Plus |
| CG5273-PA | 469 | CG5273-PA | 153..392 | 58..287 | 250 | 32.4 | Plus |
