Clone Sequence Records
BS05985.3prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-03
> BS05985.3prime
ATGGTCTAGAAAGCTTTTATTGCTGCAACTGCTGTTGGATCCAATCGTAG
TTGGCCGCAATGCTAATGAATCGTTCGGGCAGCATTCCGCCGCACTCGCC
AAGGATCTGTGCACCCAGACCCACCAGCTGGCCCTGGTAGACGGCCGGTC
CTCCAATGTCCCCACTGCAGATTCCCTGACGACGGCCATGGCCCAGGCAC
AGCACCTGGTCGTCCGCCACCAGCAGCTCATCCCGATTGGCCAGGGCGCA
TTCGCGTGGTGCCATCACCTCGGCGGCTCCTATTTGCAGGGTGCGATGCA
TGTTCACCTCGGACTCGGTGGTGCGGCCCCAGCCGGAGACCTCCACCTGG
CTGCCCATGGGCGGAACGTCCTGGGAGAGTGGAATGGCATTGACTGTCTC
ACTGAAAGTAATCTCCTCCTGCAGACGGAGCAGGGCGATTCCGGTCTTCA
GAGTGCTGTAGTTCGGGTTAATGGTGATCTCCTCCACGCGAATCTGCTTG
CCATTGTAGAGATCCACCGATCCTACGGTCACGGCGAACAGAACAGCAGC
CCATGGGGTATCCTTGCCGTCGGAGCAGACGCAAGAGAGGGCGGTGAGGG
CGTATCGCTGGCCAATGATCACGGCGCCGCAGTTGTAGCTTCCGCCGATG
GAGAGGGCCGCCTGGTAGGGCAGCTGGCCGAGAACGGCATCTTCTCCACC
GGCGATCCTGCCCTGCGGCTGGGCCTCCAGAACTCCGGCGGCCACAAGGA
TTAGTCCAATGGTGAGGGTCAGCTTCATGTCGACTGATAACT
BS05985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-PA | 762 | CG9672-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 813 | CG9672-RA | 30..793 | 779..16 | 3820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16705991..16706529 | 16..554 | 2695 | 100 | Plus |
X | 23542271 | X | 16706621..16706845 | 555..779 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:47:42 has no hits.
BS05985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:00 Download gff for
BS05985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:31 Download gff for
BS05985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:58 Download gff for
BS05985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..793 | 16..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:31 Download gff for
BS05985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..793 | 16..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:31 Download gff for
BS05985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16705991..16706529 | 16..554 | 100 | <- | Plus |
X | 16706621..16706850 | 555..785 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:58 Download gff for
BS05985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16600024..16600562 | 16..554 | 100 | <- | Plus |
arm_X | 16600654..16600883 | 555..785 | 99 | | Plus |
BS05985.5prime Sequence
792 bp (771 high quality bases) assembled on 2005-12-03
> BS05985.5prime
GAAGTTATCAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTG
TGGCCGCCGGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGA
GAAGATGCCGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGG
CGGAAGCTACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCA
CCGCCCTCTCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCT
GTTCTGTTCGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCA
GATTCGCGTGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGA
CCGGAATCGCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACA
GTCAATGCCATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGT
GGAGGTCTCCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATC
GCACCCTGCAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCC
CTGGCCAATCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCT
GGGCCATGGCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGG
CCGTCTACCAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAG
TGCGGCGGAATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGA
TTGGATCCAACAGCAGTTGCAGCAATAAAAGCTTTCTAGACC
BS05985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-PA | 762 | CG9672-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 813 | CG9672-RA | 30..793 | 16..779 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16705991..16706529 | 779..241 | 2695 | 100 | Minus |
X | 23542271 | X | 16706621..16706845 | 240..16 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:13:46 has no hits.
BS05985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:01 Download gff for
BS05985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:32 Download gff for
BS05985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:00 Download gff for
BS05985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..793 | 10..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:04 Download gff for
BS05985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..793 | 10..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:04 Download gff for
BS05985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16705991..16706529 | 241..779 | 100 | <- | Minus |
X | 16706621..16706850 | 10..240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:00 Download gff for
BS05985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16600024..16600562 | 241..779 | 100 | <- | Minus |
arm_X | 16600654..16600883 | 10..240 | 99 | | Minus |
BS05985.complete Sequence
794 bp (794 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635313
> BS05985.complete
GAAGTTATCAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTG
TGGCCGCCGGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGA
GAAGATGCCGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGG
CGGAAGCTACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCA
CCGCCCTCTCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCT
GTTCTGTTCGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCA
GATTCGCGTGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGA
CCGGAATCGCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACA
GTCAATGCCATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGT
GGAGGTCTCCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATC
GCACCCTGCAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCC
CTGGCCAATCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCT
GGGCCATGGCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGG
CCGTCTACCAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAG
TGCGGCGGAATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGA
TTGGATCCAACAGCAGTTGCAGCAATAAAAGCTTTCTAGACCAT
BS05985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 762 | CG9672-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 813 | CG9672-RA | 30..793 | 16..779 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16705991..16706529 | 779..241 | 2695 | 100 | Minus |
X | 23542271 | X | 16706621..16706845 | 240..16 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:15:59 has no hits.
BS05985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:19 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:30 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 21..789 | 10..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:24 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 31..790 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:20 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 21..789 | 10..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:01 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 31..790 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:01 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16705994..16706529 | 241..776 | 100 | <- | Minus |
X | 16706621..16706844 | 17..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:24 Download gff for
BS05985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16600027..16600562 | 241..776 | 100 | <- | Minus |
arm_X | 16600654..16600877 | 17..240 | 100 | | Minus |
BS05985.pep Sequence
Translation from 16 to 777
> BS05985.pep
MKLTLTIGLILVAAGVLEAQPQGRIAGGEDAVLGQLPYQAALSIGGSYNC
GAVIIGQRYALTALSCVCSDGKDTPWAAVLFAVTVGSVDLYNGKQIRVEE
ITINPNYSTLKTGIALLRLQEEITFSETVNAIPLSQDVPPMGSQVEVSGW
GRTTESEVNMHRTLQIGAAEVMAPRECALANRDELLVADDQVLCLGHGRR
QGICSGDIGGPAVYQGQLVGLGAQILGECGGMLPERFISIAANYDWIQQQ
LQQ*
BS05985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-PA | 253 | CG9672-PA | 1..253 | 1..253 | 1297 | 100 | Plus |
spheroide-PA | 249 | CG9675-PA | 9..248 | 7..251 | 384 | 37.2 | Plus |
CG9676-PA | 251 | CG9676-PA | 9..248 | 9..250 | 348 | 33.3 | Plus |
CG1304-PA | 260 | CG1304-PA | 4..254 | 1..248 | 348 | 34.2 | Plus |
Ser6-PA | 259 | CG2071-PA | 30..255 | 23..249 | 341 | 34.5 | Plus |