Clone BS05985 Report

Search the DGRC for BS05985

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG9672-RA
Protein status:BS05985.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05985.3prime Sequence

792 bp (791 high quality bases) assembled on 2005-12-03

> BS05985.3prime
ATGGTCTAGAAAGCTTTTATTGCTGCAACTGCTGTTGGATCCAATCGTAG
TTGGCCGCAATGCTAATGAATCGTTCGGGCAGCATTCCGCCGCACTCGCC
AAGGATCTGTGCACCCAGACCCACCAGCTGGCCCTGGTAGACGGCCGGTC
CTCCAATGTCCCCACTGCAGATTCCCTGACGACGGCCATGGCCCAGGCAC
AGCACCTGGTCGTCCGCCACCAGCAGCTCATCCCGATTGGCCAGGGCGCA
TTCGCGTGGTGCCATCACCTCGGCGGCTCCTATTTGCAGGGTGCGATGCA
TGTTCACCTCGGACTCGGTGGTGCGGCCCCAGCCGGAGACCTCCACCTGG
CTGCCCATGGGCGGAACGTCCTGGGAGAGTGGAATGGCATTGACTGTCTC
ACTGAAAGTAATCTCCTCCTGCAGACGGAGCAGGGCGATTCCGGTCTTCA
GAGTGCTGTAGTTCGGGTTAATGGTGATCTCCTCCACGCGAATCTGCTTG
CCATTGTAGAGATCCACCGATCCTACGGTCACGGCGAACAGAACAGCAGC
CCATGGGGTATCCTTGCCGTCGGAGCAGACGCAAGAGAGGGCGGTGAGGG
CGTATCGCTGGCCAATGATCACGGCGCCGCAGTTGTAGCTTCCGCCGATG
GAGAGGGCCGCCTGGTAGGGCAGCTGGCCGAGAACGGCATCTTCTCCACC
GGCGATCCTGCCCTGCGGCTGGGCCTCCAGAACTCCGGCGGCCACAAGGA
TTAGTCCAATGGTGAGGGTCAGCTTCATGTCGACTGATAACT

BS05985.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-PA 762 CG9672-RA 1..762 778..17 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-RA 813 CG9672-RA 30..793 779..16 3820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16705991..16706529 16..554 2695 100 Plus
X 23542271 X 16706621..16706845 555..779 1125 100 Plus
Blast to na_te.dros performed on 2015-02-01 08:47:42 has no hits.

BS05985.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:00 Download gff for BS05985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:31 Download gff for BS05985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:28:58 Download gff for BS05985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 25..793 16..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:31 Download gff for BS05985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 25..793 16..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:31 Download gff for BS05985.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16705991..16706529 16..554 100 <- Plus
X 16706621..16706850 555..785 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:28:58 Download gff for BS05985.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16600024..16600562 16..554 100 <- Plus
arm_X 16600654..16600883 555..785 99   Plus

BS05985.5prime Sequence

792 bp (771 high quality bases) assembled on 2005-12-03

> BS05985.5prime
GAAGTTATCAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTG
TGGCCGCCGGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGA
GAAGATGCCGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGG
CGGAAGCTACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCA
CCGCCCTCTCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCT
GTTCTGTTCGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCA
GATTCGCGTGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGA
CCGGAATCGCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACA
GTCAATGCCATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGT
GGAGGTCTCCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATC
GCACCCTGCAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCC
CTGGCCAATCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCT
GGGCCATGGCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGG
CCGTCTACCAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAG
TGCGGCGGAATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGA
TTGGATCCAACAGCAGTTGCAGCAATAAAAGCTTTCTAGACC

BS05985.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-PA 762 CG9672-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-RA 813 CG9672-RA 30..793 16..779 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16705991..16706529 779..241 2695 100 Minus
X 23542271 X 16706621..16706845 240..16 1125 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:13:46 has no hits.

BS05985.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:01 Download gff for BS05985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:32 Download gff for BS05985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:00 Download gff for BS05985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 25..793 10..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:04 Download gff for BS05985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 25..793 10..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:04 Download gff for BS05985.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16705991..16706529 241..779 100 <- Minus
X 16706621..16706850 10..240 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:00 Download gff for BS05985.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16600024..16600562 241..779 100 <- Minus
arm_X 16600654..16600883 10..240 99   Minus

BS05985.complete Sequence

794 bp (794 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635313

> BS05985.complete
GAAGTTATCAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTG
TGGCCGCCGGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGA
GAAGATGCCGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGG
CGGAAGCTACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCA
CCGCCCTCTCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCT
GTTCTGTTCGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCA
GATTCGCGTGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGA
CCGGAATCGCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACA
GTCAATGCCATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGT
GGAGGTCTCCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATC
GCACCCTGCAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCC
CTGGCCAATCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCT
GGGCCATGGCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGG
CCGTCTACCAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAG
TGCGGCGGAATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGA
TTGGATCCAACAGCAGTTGCAGCAATAAAAGCTTTCTAGACCAT

BS05985.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-RA 762 CG9672-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-RA 813 CG9672-RA 30..793 16..779 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16705991..16706529 779..241 2695 100 Minus
X 23542271 X 16706621..16706845 240..16 1125 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:15:59 has no hits.

BS05985.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:19 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:30 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 21..789 10..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:24 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 31..790 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:20 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 21..789 10..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:01 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
CG9672-RA 31..790 17..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:01 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
X 16705994..16706529 241..776 100 <- Minus
X 16706621..16706844 17..240 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:24 Download gff for BS05985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16600027..16600562 241..776 100 <- Minus
arm_X 16600654..16600877 17..240 100   Minus

BS05985.pep Sequence

Translation from 16 to 777

> BS05985.pep
MKLTLTIGLILVAAGVLEAQPQGRIAGGEDAVLGQLPYQAALSIGGSYNC
GAVIIGQRYALTALSCVCSDGKDTPWAAVLFAVTVGSVDLYNGKQIRVEE
ITINPNYSTLKTGIALLRLQEEITFSETVNAIPLSQDVPPMGSQVEVSGW
GRTTESEVNMHRTLQIGAAEVMAPRECALANRDELLVADDQVLCLGHGRR
QGICSGDIGGPAVYQGQLVGLGAQILGECGGMLPERFISIAANYDWIQQQ
LQQ*

BS05985.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9672-PA 253 CG9672-PA 1..253 1..253 1297 100 Plus
spheroide-PA 249 CG9675-PA 9..248 7..251 384 37.2 Plus
CG9676-PA 251 CG9676-PA 9..248 9..250 348 33.3 Plus
CG1304-PA 260 CG1304-PA 4..254 1..248 348 34.2 Plus
Ser6-PA 259 CG2071-PA 30..255 23..249 341 34.5 Plus