Clone BS05994 Report

Search the DGRC for BS05994

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:59
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptGstZ2-RA
Protein status:BS05994.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05994.3prime Sequence

714 bp (713 high quality bases) assembled on 2005-12-03

> BS05994.3prime
ATGGTCTAGAAAGCTTCTATTTGTTGGGCAGCTCCGGCGGACAGTCCGGT
TGATTGGAGGGATGGGCCGCCCGGAATGCCGGATTGCTCTCCAGTTCGCG
ATCGATGCGCAGAATTATGGGATACGGTCGCAAGTCGACGTGGAATCTTC
GGGCATTGAACACCTGAGGTACGAGGCAGCAGTCCGCCATGGAGATCTCA
TCGCCCACGCAATATTTGCCGGCCGAAGTGGACAGCGCCTTCTCAACCGC
CCGGAAGCCTCGTGTAATCCAGTGCTGGGCCCACTCCTTCTTCTTCTCCT
CGCCCACATGGATGAGCACGATGAGGTTCTGCAGGGGCTGGATGCCAGAG
CAAATGATCTCGACTATTTCGCGCACCTTGGCCCGCTTGTGGACGTCCTG
TGGCAGGAGTGGTCGCTGGGGACGTGTTTCCTCCAGGTAGTGCATTATGG
CTACCGATTCGATGAGGGTGTGTCCATCAATCTGTAGGGCGGGCACCTGC
TCCATTGGATTCACCTCGCGGTACTCATTGCAGTGCTGCTCGCCACCGGA
TTTGATCAGGCTGATCGGCTTGATGTCGTAGGGTATCTCCTTCAGGTTCA
TCGCAATGCGCACGCGCCAGGAGCACGAGCTGCGCCAATACGAGTAGAGT
ATTGGCTGTATGTCGGAGGAGGAAGCATTGGGACAGAGATTAGTAGACAT
GTCGACTGATAACT

BS05994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9363-PA 684 CG9363-RA 1..684 700..17 3420 100 Minus
CG9363-PB 663 CG9363-RB 23..663 657..17 3205 100 Minus
CG9363-PC 648 CG9363-RC 10..648 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 1062 CG9363-RA 30..715 700..15 3430 100 Minus
GstZ2-RB 2202 CG9363-RB 381..1023 657..15 3215 100 Minus
GstZ2-RC 1093 CG9363-RC 50..690 655..15 3205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9458203..9458534 147..478 1660 100 Plus
3R 32079331 3R 9458595..9458817 478..700 1115 100 Plus
3R 32079331 3R 9457994..9458127 15..148 670 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:11:54 has no hits.

BS05994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:14 Download gff for BS05994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:51 Download gff for BS05994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:26 Download gff for BS05994.3prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..725 3..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:59 Download gff for BS05994.3prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..725 3..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:59 Download gff for BS05994.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9457984..9458125 3..146 97 <- Plus
3R 9458203..9458533 147..477 100 <- Plus
3R 9458595..9458822 478..706 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:26 Download gff for BS05994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5283706..5283847 3..146 97 <- Plus
arm_3R 5283925..5284255 147..477 100 <- Plus
arm_3R 5284317..5284544 478..706 98   Plus

BS05994.5prime Sequence

714 bp (660 high quality bases) assembled on 2005-12-03

> BS05994.5prime
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCACAAATAGA
AGCTTTTCTAGACC

BS05994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9363-PA 684 CG9363-RA 1..676 17..692 3380 100 Plus
CG9363-PB 663 CG9363-RB 23..655 60..692 3165 100 Plus
CG9363-PC 648 CG9363-RC 10..640 62..692 3155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 1062 CG9363-RA 30..715 17..701 3405 99.9 Plus
GstZ2-RB 2202 CG9363-RB 381..1023 60..701 3190 99.8 Plus
GstZ2-RC 1093 CG9363-RC 50..690 62..701 3180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9458203..9458534 570..239 1660 100 Minus
3R 32079331 3R 9458595..9458817 239..17 1115 100 Minus
3R 32079331 3R 9458004..9458127 692..569 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:36:35 has no hits.

BS05994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:15 Download gff for BS05994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 17..699 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:52 Download gff for BS05994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:16 Download gff for BS05994.5prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..725 11..714 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:44 Download gff for BS05994.5prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..725 11..714 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:44 Download gff for BS05994.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9457984..9458125 571..714 96 <- Minus
3R 9458203..9458533 240..570 100 <- Minus
3R 9458595..9458822 11..239 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:16 Download gff for BS05994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5283706..5283847 571..714 96 <- Minus
arm_3R 5283925..5284255 240..570 100 <- Minus
arm_3R 5284317..5284544 11..239 98   Minus

BS05994.complete Sequence

716 bp (716 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638789

> BS05994.complete
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAATAG
AAGCTTTCTAGACCAT

BS05994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 684 CG9363-PA 1..684 17..700 3420 100 Plus
GstZ2-RB 663 CG9363-PB 23..663 60..700 3205 100 Plus
GstZ2-RC 648 CG9363-PC 10..648 62..700 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 1062 CG9363-RA 30..715 17..702 3430 100 Plus
GstZ2-RB 2202 CG9363-RB 381..1023 60..702 3215 100 Plus
GstZ2-RC 1093 CG9363-RC 50..690 62..702 3205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9458203..9458534 570..239 1660 100 Minus
3R 32079331 3R 9458595..9458817 239..17 1115 100 Minus
3R 32079331 3R 9457994..9458127 702..569 670 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:16:32 has no hits.

BS05994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:21 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
CG9363-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:31 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
CG9363-RA 22..722 11..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:42 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 30..707 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:21 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
CG9363-RA 22..722 11..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:35 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 30..707 17..694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:35 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9458002..9458125 571..694 100 <- Minus
3R 9458203..9458533 240..570 100 <- Minus
3R 9458595..9458817 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:42 Download gff for BS05994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5284317..5284539 17..239 100   Minus
arm_3R 5283724..5283847 571..694 100 <- Minus
arm_3R 5283925..5284255 240..570 100 <- Minus

BS05994.pep Sequence

Translation from 16 to 699

> BS05994.pep
MSTNLCPNASSSDIQPILYSYWRSSCSWRVRIAMNLKEIPYDIKPISLIK
SGGEQHCNEYREVNPMEQVPALQIDGHTLIESVAIMHYLEETRPQRPLLP
QDVHKRAKVREIVEIICSGIQPLQNLIVLIHVGEEKKKEWAQHWITRGFR
AVEKALSTSAGKYCVGDEISMADCCLVPQVFNARRFHVDLRPYPIILRID
RELESNPAFRAAHPSNQPDCPPELPNK*

BS05994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-PA 227 CG9363-PA 1..227 1..227 1214 100 Plus
GstZ2-PB 220 CG9363-PB 4..220 11..227 1139 98.2 Plus
GstZ2-PC 215 CG9363-PC 4..215 16..227 1137 100 Plus
GstZ1-PA 246 CG9362-PA 33..246 15..227 790 66.8 Plus
gfzf-PD 234 CG33546-PD 3..181 18..196 147 25.5 Plus