Clone Sequence Records
BS05994.3prime Sequence
714 bp (713 high quality bases) assembled on 2005-12-03
> BS05994.3prime
ATGGTCTAGAAAGCTTCTATTTGTTGGGCAGCTCCGGCGGACAGTCCGGT
TGATTGGAGGGATGGGCCGCCCGGAATGCCGGATTGCTCTCCAGTTCGCG
ATCGATGCGCAGAATTATGGGATACGGTCGCAAGTCGACGTGGAATCTTC
GGGCATTGAACACCTGAGGTACGAGGCAGCAGTCCGCCATGGAGATCTCA
TCGCCCACGCAATATTTGCCGGCCGAAGTGGACAGCGCCTTCTCAACCGC
CCGGAAGCCTCGTGTAATCCAGTGCTGGGCCCACTCCTTCTTCTTCTCCT
CGCCCACATGGATGAGCACGATGAGGTTCTGCAGGGGCTGGATGCCAGAG
CAAATGATCTCGACTATTTCGCGCACCTTGGCCCGCTTGTGGACGTCCTG
TGGCAGGAGTGGTCGCTGGGGACGTGTTTCCTCCAGGTAGTGCATTATGG
CTACCGATTCGATGAGGGTGTGTCCATCAATCTGTAGGGCGGGCACCTGC
TCCATTGGATTCACCTCGCGGTACTCATTGCAGTGCTGCTCGCCACCGGA
TTTGATCAGGCTGATCGGCTTGATGTCGTAGGGTATCTCCTTCAGGTTCA
TCGCAATGCGCACGCGCCAGGAGCACGAGCTGCGCCAATACGAGTAGAGT
ATTGGCTGTATGTCGGAGGAGGAAGCATTGGGACAGAGATTAGTAGACAT
GTCGACTGATAACT
BS05994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9363-PA | 684 | CG9363-RA | 1..684 | 700..17 | 3420 | 100 | Minus |
CG9363-PB | 663 | CG9363-RB | 23..663 | 657..17 | 3205 | 100 | Minus |
CG9363-PC | 648 | CG9363-RC | 10..648 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 1062 | CG9363-RA | 30..715 | 700..15 | 3430 | 100 | Minus |
GstZ2-RB | 2202 | CG9363-RB | 381..1023 | 657..15 | 3215 | 100 | Minus |
GstZ2-RC | 1093 | CG9363-RC | 50..690 | 655..15 | 3205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9458203..9458534 | 147..478 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 9458595..9458817 | 478..700 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 9457994..9458127 | 15..148 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:11:54 has no hits.
BS05994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:14 Download gff for
BS05994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:51 Download gff for
BS05994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:26 Download gff for
BS05994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..725 | 3..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:59 Download gff for
BS05994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..725 | 3..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:59 Download gff for
BS05994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9457984..9458125 | 3..146 | 97 | <- | Plus |
3R | 9458203..9458533 | 147..477 | 100 | <- | Plus |
3R | 9458595..9458822 | 478..706 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:26 Download gff for
BS05994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5283706..5283847 | 3..146 | 97 | <- | Plus |
arm_3R | 5283925..5284255 | 147..477 | 100 | <- | Plus |
arm_3R | 5284317..5284544 | 478..706 | 98 | | Plus |
BS05994.5prime Sequence
714 bp (660 high quality bases) assembled on 2005-12-03
> BS05994.5prime
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCACAAATAGA
AGCTTTTCTAGACC
BS05994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9363-PA | 684 | CG9363-RA | 1..676 | 17..692 | 3380 | 100 | Plus |
CG9363-PB | 663 | CG9363-RB | 23..655 | 60..692 | 3165 | 100 | Plus |
CG9363-PC | 648 | CG9363-RC | 10..640 | 62..692 | 3155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 1062 | CG9363-RA | 30..715 | 17..701 | 3405 | 99.9 | Plus |
GstZ2-RB | 2202 | CG9363-RB | 381..1023 | 60..701 | 3190 | 99.8 | Plus |
GstZ2-RC | 1093 | CG9363-RC | 50..690 | 62..701 | 3180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9458203..9458534 | 570..239 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 9458595..9458817 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 9458004..9458127 | 692..569 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:36:35 has no hits.
BS05994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:15 Download gff for
BS05994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:02:52 Download gff for
BS05994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:16:16 Download gff for
BS05994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..725 | 11..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:44 Download gff for
BS05994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..725 | 11..714 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:44 Download gff for
BS05994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9457984..9458125 | 571..714 | 96 | <- | Minus |
3R | 9458203..9458533 | 240..570 | 100 | <- | Minus |
3R | 9458595..9458822 | 11..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:16:16 Download gff for
BS05994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5283706..5283847 | 571..714 | 96 | <- | Minus |
arm_3R | 5283925..5284255 | 240..570 | 100 | <- | Minus |
arm_3R | 5284317..5284544 | 11..239 | 98 | | Minus |
BS05994.complete Sequence
716 bp (716 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638789
> BS05994.complete
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAATAG
AAGCTTTCTAGACCAT
BS05994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 684 | CG9363-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
GstZ2-RB | 663 | CG9363-PB | 23..663 | 60..700 | 3205 | 100 | Plus |
GstZ2-RC | 648 | CG9363-PC | 10..648 | 62..700 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 1062 | CG9363-RA | 30..715 | 17..702 | 3430 | 100 | Plus |
GstZ2-RB | 2202 | CG9363-RB | 381..1023 | 60..702 | 3215 | 100 | Plus |
GstZ2-RC | 1093 | CG9363-RC | 50..690 | 62..702 | 3205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9458203..9458534 | 570..239 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 9458595..9458817 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 9457994..9458127 | 702..569 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:32 has no hits.
BS05994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:21 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:31 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-RA | 22..722 | 11..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:42 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 30..707 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:21 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-RA | 22..722 | 11..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:35 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 30..707 | 17..694 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:35 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9458002..9458125 | 571..694 | 100 | <- | Minus |
3R | 9458203..9458533 | 240..570 | 100 | <- | Minus |
3R | 9458595..9458817 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:42 Download gff for
BS05994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5284317..5284539 | 17..239 | 100 | | Minus |
arm_3R | 5283724..5283847 | 571..694 | 100 | <- | Minus |
arm_3R | 5283925..5284255 | 240..570 | 100 | <- | Minus |
BS05994.pep Sequence
Translation from 16 to 699
> BS05994.pep
MSTNLCPNASSSDIQPILYSYWRSSCSWRVRIAMNLKEIPYDIKPISLIK
SGGEQHCNEYREVNPMEQVPALQIDGHTLIESVAIMHYLEETRPQRPLLP
QDVHKRAKVREIVEIICSGIQPLQNLIVLIHVGEEKKKEWAQHWITRGFR
AVEKALSTSAGKYCVGDEISMADCCLVPQVFNARRFHVDLRPYPIILRID
RELESNPAFRAAHPSNQPDCPPELPNK*
BS05994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-PA | 227 | CG9363-PA | 1..227 | 1..227 | 1214 | 100 | Plus |
GstZ2-PB | 220 | CG9363-PB | 4..220 | 11..227 | 1139 | 98.2 | Plus |
GstZ2-PC | 215 | CG9363-PC | 4..215 | 16..227 | 1137 | 100 | Plus |
GstZ1-PA | 246 | CG9362-PA | 33..246 | 15..227 | 790 | 66.8 | Plus |
gfzf-PD | 234 | CG33546-PD | 3..181 | 18..196 | 147 | 25.5 | Plus |