Clone Sequence Records
BS06004.3prime Sequence
354 bp (353 high quality bases) assembled on 2005-12-03
> BS06004.3prime
ATGGTCTAGAAAGCTTTTAGTGGTACTTGTAGTTCCTGTGGTGCTTCAAC
TTGGTGTAGTTAATCAGATAGAAGAACGTCATGCTGGCGACGGTCAGCTG
GAAGAAGGGAGCGATCCCGGCGCGCTTTGGGAACACGTACTTGTGCTGCC
AGCGCCACCAGGCACGGCTCACAGCTCCGGCCACAGCGTTGGGGGTCTTG
TTGCGGCGTCCCAGCCAGGCGCCGATCTCGCCCAGCTTGACCTGGCCGAA
GGGCACATCGGCTTTGCCGTAGAAGCGAGCGGGGTCGTAGGGCCCGTGCA
CCTTGGGGTTGTACTCAGCTGGATAGTCACCGAATGCCATGTCGACTGAT
AACT
BS06004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-PB | 324 | CG4692-RB | 1..324 | 340..17 | 1620 | 100 | Minus |
| CG4692-PA | 324 | CG4692-RA | 1..324 | 340..17 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..426 | 340..17 | 1620 | 100 | Minus |
| CG4692-RB | 548 | CG4692-RB | 60..383 | 340..17 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599253..24599499 | 17..263 | 1235 | 100 | Plus |
| 4 | 1348131 | 4 | 976898..977091 | 220..27 | 820 | 94.8 | Minus |
| 2R | 25286936 | 2R | 24599617..24599695 | 262..340 | 395 | 100 | Plus |
| 4 | 1348131 | 4 | 976824..976900 | 336..260 | 325 | 94.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:51:56 has no hits.
BS06004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:24 Download gff for
BS06004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PB | 1..324 | 17..340 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:05 Download gff for
BS06004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PA | 1..324 | 17..340 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:45 Download gff for
BS06004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..344 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:04 Download gff for
BS06004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..344 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:04 Download gff for
BS06004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599251..24599497 | 13..261 | 99 | <- | Plus |
| 2R | 24599617..24599702 | 262..348 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:45 Download gff for
BS06004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20486774..20487020 | 13..261 | 99 | <- | Plus |
| arm_2R | 20487140..20487225 | 262..348 | 96 | | Plus |
BS06004.5prime Sequence
354 bp (353 high quality bases) assembled on 2005-12-03
> BS06004.5prime
GAAGTTATCAGTCGACATGGCATTCGGTGACTATCCAGCTGAGTACAACC
CCAAGGTGCACGGGCCCTACGACCCCGCTCGCTTCTACGGCAAAGCCGAT
GTGCCCTTCGGCCAGGTCAAGCTGGGCGAGATCGGCGCCTGGCTGGGACG
CCGCAACAAGACCCCCAACGCTGTGGCCGGAGCTGTGAGCCGTGCCTGGT
GGCGCTGGCAGCACAAGTACGTGTTCCCAAAGCGCGCCGGGATCGCTCCC
TTCTTCCAGCTGACCGTCGCCAGCATGACGTTCTTCTATCTGATTAACTA
CACCAAGTTGAAGCACCACAGGAACTACAAGTACCACTAAAAGCTTTCTA
GACC
BS06004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-PB | 324 | CG4692-RB | 1..324 | 17..340 | 1620 | 100 | Plus |
| CG4692-PA | 324 | CG4692-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..426 | 17..340 | 1620 | 100 | Plus |
| CG4692-RB | 548 | CG4692-RB | 60..383 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599253..24599499 | 340..94 | 1235 | 100 | Minus |
| 4 | 1348131 | 4 | 976898..977091 | 137..330 | 820 | 94.8 | Plus |
| 2R | 25286936 | 2R | 24599617..24599695 | 95..17 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 976824..976900 | 21..97 | 325 | 94.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:08:56 has no hits.
BS06004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:25 Download gff for
BS06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PB | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:06 Download gff for
BS06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:31 Download gff for
BS06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:19 Download gff for
BS06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..344 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:19 Download gff for
BS06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599617..24599702 | 9..95 | 96 | | Minus |
| 2R | 24599251..24599497 | 96..344 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:31 Download gff for
BS06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20486774..20487020 | 96..344 | 99 | <- | Minus |
| arm_2R | 20487140..20487225 | 9..95 | 96 | | Minus |
BS06004.complete Sequence
356 bp (356 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635314
> BS06004.complete
GAAGTTATCAGTCGACATGGCATTCGGTGACTATCCAGCTGAGTACAACC
CCAAGGTGCACGGGCCCTACGACCCCGCTCGCTTCTACGGCAAAGCCGAT
GTGCCCTTCGGCCAGGTCAAGCTGGGCGAGATCGGCGCCTGGCTGGGACG
CCGCAACAAGACCCCCAACGCTGTGGCCGGAGCTGTGAGCCGTGCCTGGT
GGCGCTGGCAGCACAAGTACGTGTTCCCAAAGCGCGCCGGGATCGCTCCC
TTCTTCCAGCTGACCGTCGCCAGCATGACGTTCTTCTATCTGATTAACTA
CACCAAGTTGAAGCACCACAGGAACTACAAGTACCACTAAAAGCTTTCTA
GACCAT
BS06004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 324 | CG4692-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
| CG4692-RB | 324 | CG4692-PB | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..426 | 17..340 | 1620 | 100 | Plus |
| CG4692-RB | 548 | CG4692-RB | 60..383 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599253..24599499 | 340..94 | 1235 | 100 | Minus |
| 4 | 1348131 | 4 | 976898..977091 | 137..330 | 820 | 94.8 | Plus |
| 2R | 25286936 | 2R | 24599617..24599695 | 95..17 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 976824..976900 | 21..97 | 325 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:07:20 has no hits.
BS06004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:35 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:56 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 71..403 | 9..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:30 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 60..381 | 17..338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:35 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 71..403 | 9..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:54 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 60..381 | 17..338 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:54 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599255..24599497 | 96..338 | 100 | <- | Minus |
| 2R | 24599617..24599695 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:30 Download gff for
BS06004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20486778..20487020 | 96..338 | 100 | <- | Minus |
| arm_2R | 20487140..20487218 | 17..95 | 100 | | Minus |
BS06004.pep Sequence
Translation from 16 to 339
> BS06004.pep
MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGEIGAWLGRRNKTP
NAVAGAVSRAWWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYTKLKH
HRNYKYH*
BS06004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-PA | 107 | CG4692-PA | 1..107 | 1..107 | 604 | 100 | Plus |
| CG4692-PB | 107 | CG4692-PB | 1..107 | 1..107 | 604 | 100 | Plus |
