Clone Sequence Records
BS06012.3prime Sequence
903 bp (695 high quality bases) assembled on 2005-12-03
> BS06012.3prime
ATGGTCTAGAAAGCTTTTATAAGCTTGGTGGCTCCGTCATTTCCTCCTTC
TTGGCATCATTTCCCATTGCGTCTAGTGCGTCCTTCTCATCCTCTGGCGG
TGGCGGCAATTCTAATCCTCCGAGCATACTTTCTGGTCGATTTGGAGATG
GCGGTTCGGGAACGAGCTCTTCGGATTCGAGATCTATTTCGCGGGGTGCC
TTACGAGTGGAGGGCCTTTCGAAATCCGGATTGCCGTCATCATCGGTGCG
CATGCTCAGCGCGAACTTGATAATTCCCATGCCCTGGTAGTCATCGTCGA
TGGGTATGTTTCGGGCCCACACCTTGCAGCTGAAGAAGGTCTTCGCATTC
TCGGGCATCTTGTTCATCTGGATGGCCACCACGCGCGTCACTCCTCTCAT
GTTCTCGGAGGCCTCGAAATATGGACCCGGATAGAAGACCATTTCGGGCT
TGGGCCCATTGGTCACCTCGCAGGTGATCCAAATCTTGGGCGTGTTGCCC
AGCTTGCCCACGGTGTCCTGAAGGCTCGCTGGCGCCTCCTTGGGCAAGTC
ATCTGGCGTGTCGTAGGTCTCCGGCACATAGCCAATAACCTTGTTCAGCT
TGATGAAGACGGTCGGCTTTTCGGTGGCGTAGCCCCACGTAGTGTCCTGG
TTGAAATCGGCGAAGAAGTCAATGGCATTGTCGTTCAATTTGTTCAGGAA
ATCGTCGATGCGGTCCGCAATCGGATTGACCTCACTCATGATGTGCGTAA
AGTAGGCCAGCACGGATCGATTCTGGTTGGGCACCATCGACAGACCCGGC
GGACCCTTGAGCCAGCGCGGCTTATTCGGATCAATGATGGCCAGCATAAA
GATGCCCAACCAAAAGGCCACAATGCACACGATTAAGGCGTATAGTACCA
GGT
BS06012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-PA | 1062 | CG11703-RA | 176..1062 | 903..17 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-RA | 1278 | CG11703-RA | 249..1135 | 903..17 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19227046..19227932 | 17..903 | 4420 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:50:46 has no hits.
BS06012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:33 Download gff for
BS06012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-PA | 176..1062 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:15 Download gff for
BS06012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-PA | 176..1062 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:10 Download gff for
BS06012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 249..1140 | 11..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:43 Download gff for
BS06012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 249..1140 | 11..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:43 Download gff for
BS06012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19227041..19227932 | 11..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:10 Download gff for
BS06012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15052763..15053654 | 11..903 | 99 | | Plus |
BS06012.5prime Sequence
859 bp (742 high quality bases) assembled on 2005-12-03
> BS06012.5prime
GAAGTTATCAGTCGACATGCCGGAGGACGTAATGGTGCCCGCTGGGGACT
ACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCGCAAGAAG
GACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACAAATTGTT
CGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTACCTGGTAC
TATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCATCTTTATG
CTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTCCGCCGGG
TCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTACTTTACGC
ACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGATTTCCTG
AACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCAACCAGGA
CACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATCAAGCTGA
ACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGATGACTTG
CCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGCTGGGCAA
CACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCCAAGCCCG
AAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAACATGAGA
GGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCGAGAATGC
GAAGACCTTCTTCAGCTGCAAGGTGTGGGGCCGAAACATACCCATCGACG
ATGACTACCAGGGCATGGGAATTATCAGGTTCGCGCTGAGCATGCGCACC
GATGATGAC
BS06012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-PA | 1062 | CG11703-RA | 1..843 | 17..859 | 4165 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-RA | 1278 | CG11703-RA | 74..916 | 17..859 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19227265..19228107 | 859..17 | 4185 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-11 14:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2634..2687 | 115..168 | 108 | 66.7 | Plus |
BS06012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:34 Download gff for
BS06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:16 Download gff for
BS06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:41 Download gff for
BS06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 65..916 | 7..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:59 Download gff for
BS06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 65..916 | 7..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:59 Download gff for
BS06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19227265..19228116 | 7..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:41 Download gff for
BS06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15052987..15053838 | 7..859 | 99 | | Minus |
BS06012.complete Sequence
1094 bp (1094 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635316
> BS06012.complete
GAAGTTATCAGTCGACATGCCGGAGGACGTAATGGTGCCCGCTGGGGACT
ACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCGCAAGAAG
GACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACAAATTGTT
CGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTACCTGGTAC
TATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCATCTTTATG
CTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTCCGCCGGG
TCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTACTTTACGC
ACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGATTTCCTG
AACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCAACCAGGA
CACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATCAAGCTGA
ACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGATGACTTG
CCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGCTGGGCAA
CACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCCAAGCCCG
AAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAACATGAGA
GGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCGAGAATGC
GAAGACCTTCTTCAGCTGCAAGGTGTGGGCCCGAAACATACCCATCGACG
ATGACTACCAGGGCATGGGAATTATCAAGTTCGCGCTGAGCATGCGCACC
GATGATGACGGCAATCCGGATTTCGAAAGGCCCTCCACTCGTAAGGCACC
CCGCGAAATAGATCTCGAATCCGAAGAGCTCGTTCCCGAACCGCCATCTC
CAAATCGACCAGAAAGTATGCTCGGAGGATTAGAATTGCCGCCACCGCCA
GAGGATGAGAAGGACGCACTAGACGCAATGGGAAATGATGCCAAGAAGGA
GGAAATGACGGAGCCACCAAGCTTATAAAAGCTTTCTAGACCAT
BS06012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-RA | 1062 | CG11703-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-RA | 1278 | CG11703-RA | 74..1135 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19227046..19228107 | 1078..17 | 5310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:05:13 has no hits.
BS06012.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:54 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 1..1062 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:53 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 65..1140 | 7..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:53 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 74..1133 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:54 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 65..1140 | 7..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:37 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11703-RA | 74..1133 | 17..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:37 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19227048..19228107 | 17..1076 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:53 Download gff for
BS06012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15052770..15053829 | 17..1076 | 100 | | Minus |
BS06012.pep Sequence
Translation from 16 to 1077
> BS06012.pep
MPEDVMVPAGDYKLVKQIRRNQETRRKKDLPWSKRIFDIDEHKLFGRTAL
GWMRITGFYLVLYALIVCIVAFWLGIFMLAIIDPNKPRWLKGPPGLSMVP
NQNRSVLAYFTHIMSEVNPIADRIDDFLNKLNDNAIDFFADFNQDTTWGY
ATEKPTVFIKLNKVIGYVPETYDTPDDLPKEAPASLQDTVGKLGNTPKIW
ITCEVTNGPKPEMVFYPGPYFEASENMRGVTRVVAIQMNKMPENAKTFFS
CKVWARNIPIDDDYQGMGIIKFALSMRTDDDGNPDFERPSTRKAPREIDL
ESEELVPEPPSPNRPESMLGGLELPPPPEDEKDALDAMGNDAKKEEMTEP
PSL*
BS06012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11703-PA | 353 | CG11703-PA | 1..353 | 1..353 | 1897 | 100 | Plus |
| nrv2-PG | 323 | CG9261-PG | 18..320 | 20..274 | 239 | 25 | Plus |
| nrv2-PF | 323 | CG9261-PF | 18..320 | 20..274 | 239 | 25 | Plus |
| nrv2-PC | 323 | CG9261-PC | 18..320 | 20..274 | 239 | 25 | Plus |
| nrv1-PB | 309 | CG9258-PB | 20..289 | 28..258 | 230 | 24.9 | Plus |
