Clone BS06013 Report

Search the DGRC for BS06013

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG9099-RA
Protein status:BS06013.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06013.5prime Sequence

600 bp (599 high quality bases) assembled on 2005-12-03

> BS06013.5prime
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACATAAAAGCTTTCTAGACC

BS06013.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-PA 570 CG9099-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 689 CG9099-RB 52..622 17..587 2855 100 Plus
CG9099-RA 729 CG9099-RA 92..662 17..587 2855 100 Plus
Rcp-RB 1080 CG4875-RB 834..1023 587..398 950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885967..16886230 398..135 1320 100 Minus
X 23542271 X 16885613..16885802 587..398 950 100 Minus
X 23542271 X 16886318..16886437 136..17 600 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:36:17 has no hits.

BS06013.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:36 Download gff for BS06013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:19 Download gff for BS06013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:43 Download gff for BS06013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..668 7..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:08 Download gff for BS06013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..668 7..593 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:08 Download gff for BS06013.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16885607..16885801 399..593 98 <- Minus
X 16885967..16886228 137..398 100 <- Minus
X 16886318..16886444 7..136 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:43 Download gff for BS06013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16779640..16779834 399..593 98 <- Minus
arm_X 16780000..16780261 137..398 100 <- Minus
arm_X 16780351..16780477 7..136 96   Minus

BS06013.3prime Sequence

600 bp (599 high quality bases) assembled on 2005-12-03

> BS06013.3prime
ATGGTCTAGAAAGCTTTTATGTTCGCTTCTGATCGCCCAAATCCTCGATG
ACGTCCTCATCGATCTCGGCCCATTTTTCGGGTATGACATCGAACAAGTC
ATCCTTGACGTCACCCTGAATGACGATCTCGTCGTCTCCGGTAACCGAGG
AGCCGCAGGCAAATTTCGTGCCAAAGAACTTGGCGGCCACCTTGAGATCA
ATATCAAAAGTGCTCAATCCTGTGACCACGGTCACTGACTTCTTTTTGCC
ACGTGCCGCCCGCGAGACGCAGATACGCTTGGGCACGTCCTCTTTCTTCT
TGACGCGCAACAGTCCCTTGCCACCGCGTTTCTGGCGCTTCTTGTCGTCA
TCCGTCCCGTCAGCGGCGGCAGCCTCCTCCTCAATCTTTAGTCGCTCGAA
GTCATCGGGCATGTGGAGCTCCAGCCACTCCTTGCACTTCTCGTACTCCG
GATAGTACTCGCAGTACTCAATGGGCATCGTGCAGTGGCCACAGTACTTC
ATCTGGATCGGATAGGTGACGCCTTCGCGCGGACCCAACTGTAGGCGGTC
GGCGACGCTGTTGGTGCCCACATCTTCGTTCGTCATGTCGACTGATAACT

BS06013.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-PA 570 CG9099-RA 1..570 586..17 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 689 CG9099-RB 52..622 586..16 2855 100 Minus
CG9099-RA 729 CG9099-RA 92..662 586..16 2855 100 Minus
Rcp-RB 1080 CG4875-RB 834..1023 16..205 950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885967..16886230 205..468 1320 100 Plus
X 23542271 X 16885613..16885802 16..205 950 100 Plus
X 23542271 X 16886318..16886437 467..586 600 100 Plus
Blast to na_te.dros performed on 2015-02-01 08:39:19 has no hits.

BS06013.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:35 Download gff for BS06013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:18 Download gff for BS06013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:23 Download gff for BS06013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..668 10..596 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:13 Download gff for BS06013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..668 10..596 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:13 Download gff for BS06013.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16885607..16885801 10..204 98 <- Plus
X 16885967..16886228 205..466 100 <- Plus
X 16886318..16886444 467..596 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:23 Download gff for BS06013.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16779640..16779834 10..204 98 <- Plus
arm_X 16780000..16780261 205..466 100 <- Plus
arm_X 16780351..16780477 467..596 96   Plus

BS06013.complete Sequence

602 bp (602 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635317

> BS06013.complete
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACATAAAAGCTTTCTAGACC
AT

BS06013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 570 CG9099-PB 1..570 17..586 2850 100 Plus
CG9099-RA 570 CG9099-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 689 CG9099-RB 52..622 17..587 2855 100 Plus
CG9099-RA 729 CG9099-RA 92..662 17..587 2855 100 Plus
Rcp-RB 1080 CG4875-RB 834..1023 587..398 950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885967..16886230 398..135 1320 100 Minus
X 23542271 X 16885613..16885802 587..398 950 100 Minus
X 23542271 X 16886318..16886437 136..17 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:43:09 has no hits.

BS06013.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:55 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:54 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 82..665 7..593 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:10 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 92..659 17..584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:56 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 82..665 7..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:25 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 92..659 17..584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:25 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
X 16885967..16886228 137..398 100 <- Minus
X 16886318..16886437 17..136 100   Minus
X 16885616..16885801 399..584 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:10 Download gff for BS06013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16780000..16780261 137..398 100 <- Minus
arm_X 16780351..16780470 17..136 100   Minus
arm_X 16779649..16779834 399..584 100 <- Minus

BS06013.pep Sequence

Translation from 16 to 585

> BS06013.pep
MTNEDVGTNSVADRLQLGPREGVTYPIQMKYCGHCTMPIEYCEYYPEYEK
CKEWLELHMPDDFERLKIEEEAAAADGTDDDKKRQKRGGKGLLRVKKKED
VPKRICVSRAARGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTG
DDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDQKRT*

BS06013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-PB 189 CG9099-PB 1..189 1..189 1004 100 Plus
CG9099-PA 189 CG9099-PA 1..189 1..189 1004 100 Plus