Clone Sequence Records
BS06013.5prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-03
> BS06013.5prime
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACATAAAAGCTTTCTAGACC
BS06013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-PA | 570 | CG9099-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 689 | CG9099-RB | 52..622 | 17..587 | 2855 | 100 | Plus |
CG9099-RA | 729 | CG9099-RA | 92..662 | 17..587 | 2855 | 100 | Plus |
Rcp-RB | 1080 | CG4875-RB | 834..1023 | 587..398 | 950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885967..16886230 | 398..135 | 1320 | 100 | Minus |
X | 23542271 | X | 16885613..16885802 | 587..398 | 950 | 100 | Minus |
X | 23542271 | X | 16886318..16886437 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:36:17 has no hits.
BS06013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:36 Download gff for
BS06013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:19 Download gff for
BS06013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:43 Download gff for
BS06013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..668 | 7..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:08 Download gff for
BS06013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..668 | 7..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:08 Download gff for
BS06013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885607..16885801 | 399..593 | 98 | <- | Minus |
X | 16885967..16886228 | 137..398 | 100 | <- | Minus |
X | 16886318..16886444 | 7..136 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:43 Download gff for
BS06013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16779640..16779834 | 399..593 | 98 | <- | Minus |
arm_X | 16780000..16780261 | 137..398 | 100 | <- | Minus |
arm_X | 16780351..16780477 | 7..136 | 96 | | Minus |
BS06013.3prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-03
> BS06013.3prime
ATGGTCTAGAAAGCTTTTATGTTCGCTTCTGATCGCCCAAATCCTCGATG
ACGTCCTCATCGATCTCGGCCCATTTTTCGGGTATGACATCGAACAAGTC
ATCCTTGACGTCACCCTGAATGACGATCTCGTCGTCTCCGGTAACCGAGG
AGCCGCAGGCAAATTTCGTGCCAAAGAACTTGGCGGCCACCTTGAGATCA
ATATCAAAAGTGCTCAATCCTGTGACCACGGTCACTGACTTCTTTTTGCC
ACGTGCCGCCCGCGAGACGCAGATACGCTTGGGCACGTCCTCTTTCTTCT
TGACGCGCAACAGTCCCTTGCCACCGCGTTTCTGGCGCTTCTTGTCGTCA
TCCGTCCCGTCAGCGGCGGCAGCCTCCTCCTCAATCTTTAGTCGCTCGAA
GTCATCGGGCATGTGGAGCTCCAGCCACTCCTTGCACTTCTCGTACTCCG
GATAGTACTCGCAGTACTCAATGGGCATCGTGCAGTGGCCACAGTACTTC
ATCTGGATCGGATAGGTGACGCCTTCGCGCGGACCCAACTGTAGGCGGTC
GGCGACGCTGTTGGTGCCCACATCTTCGTTCGTCATGTCGACTGATAACT
BS06013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-PA | 570 | CG9099-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 689 | CG9099-RB | 52..622 | 586..16 | 2855 | 100 | Minus |
CG9099-RA | 729 | CG9099-RA | 92..662 | 586..16 | 2855 | 100 | Minus |
Rcp-RB | 1080 | CG4875-RB | 834..1023 | 16..205 | 950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885967..16886230 | 205..468 | 1320 | 100 | Plus |
X | 23542271 | X | 16885613..16885802 | 16..205 | 950 | 100 | Plus |
X | 23542271 | X | 16886318..16886437 | 467..586 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:39:19 has no hits.
BS06013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:35 Download gff for
BS06013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:18 Download gff for
BS06013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:23 Download gff for
BS06013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..668 | 10..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:13 Download gff for
BS06013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..668 | 10..596 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:13 Download gff for
BS06013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885607..16885801 | 10..204 | 98 | <- | Plus |
X | 16885967..16886228 | 205..466 | 100 | <- | Plus |
X | 16886318..16886444 | 467..596 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:23 Download gff for
BS06013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16779640..16779834 | 10..204 | 98 | <- | Plus |
arm_X | 16780000..16780261 | 205..466 | 100 | <- | Plus |
arm_X | 16780351..16780477 | 467..596 | 96 | | Plus |
BS06013.complete Sequence
602 bp (602 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635317
> BS06013.complete
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACATAAAAGCTTTCTAGACC
AT
BS06013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 570 | CG9099-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
CG9099-RA | 570 | CG9099-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 689 | CG9099-RB | 52..622 | 17..587 | 2855 | 100 | Plus |
CG9099-RA | 729 | CG9099-RA | 92..662 | 17..587 | 2855 | 100 | Plus |
Rcp-RB | 1080 | CG4875-RB | 834..1023 | 587..398 | 950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885967..16886230 | 398..135 | 1320 | 100 | Minus |
X | 23542271 | X | 16885613..16885802 | 587..398 | 950 | 100 | Minus |
X | 23542271 | X | 16886318..16886437 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:43:09 has no hits.
BS06013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:55 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:54 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 82..665 | 7..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:10 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 92..659 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:56 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 82..665 | 7..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:25 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 92..659 | 17..584 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:25 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885967..16886228 | 137..398 | 100 | <- | Minus |
X | 16886318..16886437 | 17..136 | 100 | | Minus |
X | 16885616..16885801 | 399..584 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:10 Download gff for
BS06013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16780000..16780261 | 137..398 | 100 | <- | Minus |
arm_X | 16780351..16780470 | 17..136 | 100 | | Minus |
arm_X | 16779649..16779834 | 399..584 | 100 | <- | Minus |
BS06013.pep Sequence
Translation from 16 to 585
> BS06013.pep
MTNEDVGTNSVADRLQLGPREGVTYPIQMKYCGHCTMPIEYCEYYPEYEK
CKEWLELHMPDDFERLKIEEEAAAADGTDDDKKRQKRGGKGLLRVKKKED
VPKRICVSRAARGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTG
DDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDQKRT*
BS06013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-PB | 189 | CG9099-PB | 1..189 | 1..189 | 1004 | 100 | Plus |
CG9099-PA | 189 | CG9099-PA | 1..189 | 1..189 | 1004 | 100 | Plus |