Clone Sequence Records
BS06015.3prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06015.3prime
ATGGTCTAGAAAGCTTCTAGACCTTGGGCGCAGCTGGCGGGGATTGGTGC
GGCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGC
CGTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCC
AGCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGC
ACCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAA
AACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCG
GCAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCA
TTGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTA
AATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATC
CGCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAG
TCCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGAC
GTAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCAC
CCCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGA
TTCGCCTGCTGCATGTCGACTGATAACT
BS06015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 50..699 | 666..17 | 3250 | 100 | Minus |
CG14704-PB | 648 | PGRP-LB-RB | 1..648 | 664..17 | 3240 | 100 | Minus |
CG14704-PA | 648 | PGRP-LB-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RF | 1234 | CG14704-RF | 427..1076 | 666..17 | 3250 | 100 | Minus |
PGRP-LB-RE | 925 | CG14704-RE | 118..767 | 666..17 | 3250 | 100 | Minus |
PGRP-LB-RD | 926 | CG14704-RD | 119..768 | 666..17 | 3250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453808 | 310..666 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 11453007..11453299 | 17..309 | 1465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:52 has no hits.
BS06015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:37 Download gff for
BS06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 37..699 | 17..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:20 Download gff for
BS06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 37..699 | 17..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:53 Download gff for
BS06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 106..771 | 12..678 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:08 Download gff for
BS06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 106..771 | 12..678 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:08 Download gff for
BS06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 12..309 | 99 | <- | Plus |
3R | 11453452..11453815 | 310..678 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:53 Download gff for
BS06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 12..309 | 99 | <- | Plus |
arm_3R | 7279174..7279537 | 310..678 | 98 | | Plus |
BS06015.5prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06015.5prime
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCTAGAAGCTTTCTAGACC
BS06015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 50..699 | 15..664 | 3250 | 100 | Plus |
CG14704-PB | 648 | PGRP-LB-RB | 1..648 | 17..664 | 3240 | 100 | Plus |
CG14704-PA | 648 | PGRP-LB-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RF | 1234 | CG14704-RF | 427..1076 | 15..664 | 3250 | 100 | Plus |
PGRP-LB-RE | 925 | CG14704-RE | 118..767 | 15..664 | 3250 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 119..768 | 15..664 | 3250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453808 | 371..15 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 11453007..11453299 | 664..372 | 1465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:51:01 has no hits.
BS06015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:38 Download gff for
BS06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 45..699 | 8..664 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:22 Download gff for
BS06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 45..699 | 8..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:20:52 Download gff for
BS06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 114..771 | 8..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:21 Download gff for
BS06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 114..771 | 8..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:21 Download gff for
BS06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 372..669 | 99 | <- | Minus |
3R | 11453452..11453813 | 8..371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:20:52 Download gff for
BS06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 372..669 | 99 | <- | Minus |
arm_3R | 7279174..7279535 | 8..371 | 99 | | Minus |
BS06015.complete Sequence
680 bp (680 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635318
> BS06015.complete
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCTAGAAGCTTTCTAGACCAT
BS06015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RD | 768 | CG14704-PD | 119..768 | 15..664 | 3250 | 100 | Plus |
PGRP-LB-RC | 699 | CG14704-PC | 50..699 | 15..664 | 3250 | 100 | Plus |
PGRP-LB-RF | 648 | CG14704-PF | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RF | 1234 | CG14704-RF | 427..1076 | 15..664 | 3250 | 100 | Plus |
PGRP-LB-RE | 925 | CG14704-RE | 118..767 | 15..664 | 3250 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 119..768 | 15..664 | 3250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453808 | 371..15 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 11453007..11453299 | 664..372 | 1465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:39 has no hits.
BS06015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:57 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 45..699 | 8..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:56 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RA | 317..974 | 8..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:58 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 121..768 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:57 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RA | 317..974 | 8..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:55 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 121..768 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:55 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453007..11453299 | 372..664 | 100 | <- | Minus |
3R | 11453452..11453806 | 17..371 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:58 Download gff for
BS06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278729..7279021 | 372..664 | 100 | <- | Minus |
arm_3R | 7279174..7279528 | 17..371 | 100 | | Minus |
BS06015.pep Sequence
Translation from 16 to 663
> BS06015.pep
MQQANLGDGVATARLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVC
YSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAH
APKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLL
GHRQVRDTECPGGRLFAEISSWPHFTHINDTEGVSSTTAPVVPHVHPQAA
APQKPHQSPPAAPKV*
BS06015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-PF | 215 | CG14704-PF | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PE | 215 | CG14704-PE | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PA | 215 | CG14704-PA | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PB | 215 | CG14704-PB | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PC | 232 | CG14704-PC | 18..232 | 1..215 | 1176 | 100 | Plus |