Clone BS06015 Report

Search the DGRC for BS06015

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LB-RA
Protein status:BS06015.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06015.3prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06015.3prime
ATGGTCTAGAAAGCTTCTAGACCTTGGGCGCAGCTGGCGGGGATTGGTGC
GGCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGC
CGTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCC
AGCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGC
ACCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAA
AACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCG
GCAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCA
TTGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTA
AATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATC
CGCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAG
TCCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGAC
GTAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCAC
CCCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGA
TTCGCCTGCTGCATGTCGACTGATAACT

BS06015.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 50..699 666..17 3250 100 Minus
CG14704-PB 648 PGRP-LB-RB 1..648 664..17 3240 100 Minus
CG14704-PA 648 PGRP-LB-RA 1..648 664..17 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RF 1234 CG14704-RF 427..1076 666..17 3250 100 Minus
PGRP-LB-RE 925 CG14704-RE 118..767 666..17 3250 100 Minus
PGRP-LB-RD 926 CG14704-RD 119..768 666..17 3250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453808 310..666 1785 100 Plus
3R 32079331 3R 11453007..11453299 17..309 1465 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:51:52 has no hits.

BS06015.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:37 Download gff for BS06015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 37..699 17..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:20 Download gff for BS06015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 37..699 17..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:53 Download gff for BS06015.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 106..771 12..678 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:08 Download gff for BS06015.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 106..771 12..678 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:08 Download gff for BS06015.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 12..309 99 <- Plus
3R 11453452..11453815 310..678 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:53 Download gff for BS06015.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 12..309 99 <- Plus
arm_3R 7279174..7279537 310..678 98   Plus

BS06015.5prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06015.5prime
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCTAGAAGCTTTCTAGACC

BS06015.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 50..699 15..664 3250 100 Plus
CG14704-PB 648 PGRP-LB-RB 1..648 17..664 3240 100 Plus
CG14704-PA 648 PGRP-LB-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RF 1234 CG14704-RF 427..1076 15..664 3250 100 Plus
PGRP-LB-RE 925 CG14704-RE 118..767 15..664 3250 100 Plus
PGRP-LB-RD 926 CG14704-RD 119..768 15..664 3250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453808 371..15 1785 100 Minus
3R 32079331 3R 11453007..11453299 664..372 1465 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:51:01 has no hits.

BS06015.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:38 Download gff for BS06015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 45..699 8..664 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:22 Download gff for BS06015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 45..699 8..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:20:52 Download gff for BS06015.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 114..771 8..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:21 Download gff for BS06015.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 114..771 8..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:21 Download gff for BS06015.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 372..669 99 <- Minus
3R 11453452..11453813 8..371 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:20:52 Download gff for BS06015.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 372..669 99 <- Minus
arm_3R 7279174..7279535 8..371 99   Minus

BS06015.complete Sequence

680 bp (680 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635318

> BS06015.complete
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCTAGAAGCTTTCTAGACCAT

BS06015.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RD 768 CG14704-PD 119..768 15..664 3250 100 Plus
PGRP-LB-RC 699 CG14704-PC 50..699 15..664 3250 100 Plus
PGRP-LB-RF 648 CG14704-PF 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RF 1234 CG14704-RF 427..1076 15..664 3250 100 Plus
PGRP-LB-RE 925 CG14704-RE 118..767 15..664 3250 100 Plus
PGRP-LB-RD 926 CG14704-RD 119..768 15..664 3250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453808 371..15 1785 100 Minus
3R 32079331 3R 11453007..11453299 664..372 1465 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:36:39 has no hits.

BS06015.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:57 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 45..699 8..664 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:56 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RA 317..974 8..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:58 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 121..768 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:57 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RA 317..974 8..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:55 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 121..768 17..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:55 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11453007..11453299 372..664 100 <- Minus
3R 11453452..11453806 17..371 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:58 Download gff for BS06015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278729..7279021 372..664 100 <- Minus
arm_3R 7279174..7279528 17..371 100   Minus

BS06015.pep Sequence

Translation from 16 to 663

> BS06015.pep
MQQANLGDGVATARLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVC
YSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAH
APKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLL
GHRQVRDTECPGGRLFAEISSWPHFTHINDTEGVSSTTAPVVPHVHPQAA
APQKPHQSPPAAPKV*

BS06015.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-PF 215 CG14704-PF 1..215 1..215 1176 100 Plus
PGRP-LB-PE 215 CG14704-PE 1..215 1..215 1176 100 Plus
PGRP-LB-PA 215 CG14704-PA 1..215 1..215 1176 100 Plus
PGRP-LB-PB 215 CG14704-PB 1..215 1..215 1176 100 Plus
PGRP-LB-PC 232 CG14704-PC 18..232 1..215 1176 100 Plus