Clone BS06024 Report

Search the DGRC for BS06024

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptcrim-RA
Protein status:BS06024.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06024.3prime Sequence

507 bp (506 high quality bases) assembled on 2005-12-03

> BS06024.3prime
ATGGTCTAGAAAGCTTCTAGCGTAGAAGCAGGGCAGGAATTAGAGTGAGA
AGACCGATTACGGCGGACGTTTGTAGGCCGCTGGCCCCATTGCATCGATG
GTCGAGGAAGCAGAAACAGAACGTGGTGTCCGTGTAGTAGTCACGGCGCA
CGTCGTGCTCCTTGATCGTGTGGTTTACGTAGTTCGCTAGCTTTTCATCG
TGGGCGGCAGGACGACATCCTTCGTATTTGTCGGCGGGAATGTCTTTGCG
GAAGCTCAGCGCGCTTAGGCAGTCACGTGTGATTGTTTCCCTGGCGCCGC
GTCGCTCCGTCACCTTGACGCAAATGTCGTCCGGTTCCGGGCAGTGCTCG
CCCAGGAATCCTATTCCCCGCCAGTTAAACTTCTCCGCACAGCCGGGCGT
GGCCGAAGTGCAGCGGTAGCACCAAATTGCAGAGCCCTCGTGAATTAGAG
CTGCCAGCAGCAGGGCTGCAATGAGATTCGTATGGTAGTGCATGTCGACT
GATAACT

BS06024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6038-PA 477 CG6038-RA 1..477 493..17 2385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 752 CG6038-RA 107..587 495..15 2405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11710672..11710952 15..295 1405 100 Plus
3L 28110227 3L 11711008..11711149 295..436 710 100 Plus
3L 28110227 3L 11711220..11711280 435..495 305 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:45:51 has no hits.

BS06024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:49 Download gff for BS06024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 17..493 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:37 Download gff for BS06024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 17..493 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:14 Download gff for BS06024.3prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..598 5..501 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:14 Download gff for BS06024.3prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..598 5..501 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:14 Download gff for BS06024.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11710661..11710951 5..294 98 <- Plus
3L 11711008..11711148 295..435 100 <- Plus
3L 11711221..11711284 436..501 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:14 Download gff for BS06024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11703761..11704051 5..294 98 <- Plus
arm_3L 11704108..11704248 295..435 100 <- Plus
arm_3L 11704321..11704384 436..501 93   Plus

BS06024.5prime Sequence

507 bp (506 high quality bases) assembled on 2005-12-03

> BS06024.5prime
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCTAGAAGCTTT
CTAGACC

BS06024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6038-PA 477 CG6038-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 752 CG6038-RA 107..587 15..495 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11710672..11710952 495..215 1405 100 Minus
3L 28110227 3L 11711008..11711149 215..74 710 100 Minus
3L 28110227 3L 11711220..11711280 75..15 305 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:00:31 has no hits.

BS06024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:50 Download gff for BS06024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 17..493 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:39 Download gff for BS06024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:22 Download gff for BS06024.5prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..598 9..505 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:43 Download gff for BS06024.5prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..598 9..505 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:43 Download gff for BS06024.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11710661..11710951 216..505 98 <- Minus
3L 11711008..11711148 75..215 100 <- Minus
3L 11711221..11711284 9..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:22 Download gff for BS06024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11703761..11704051 216..505 98 <- Minus
arm_3L 11704108..11704248 75..215 100 <- Minus
arm_3L 11704321..11704384 9..74 93   Minus

BS06024.complete Sequence

509 bp (509 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635319

> BS06024.complete
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCTAGAAGCTTT
CTAGACCAT

BS06024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 477 CG6038-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 752 CG6038-RA 107..587 15..495 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11710672..11710952 495..215 1405 100 Minus
3L 28110227 3L 11711008..11711149 215..74 710 100 Minus
3L 28110227 3L 11711220..11711280 75..15 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:31:21 has no hits.

BS06024.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:33 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6038-RA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:59 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6038-RA 89..584 9..505 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:12 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
crim-RA 109..585 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:33 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6038-RA 89..584 9..505 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:22 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
crim-RA 109..585 17..493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:22 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11711008..11711148 75..215 100 <- Minus
3L 11711221..11711278 17..74 100   Minus
3L 11710674..11710951 216..493 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:12 Download gff for BS06024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11703774..11704051 216..493 100 <- Minus
arm_3L 11704108..11704248 75..215 100 <- Minus
arm_3L 11704321..11704378 17..74 100   Minus

BS06024.pep Sequence

Translation from 16 to 492

> BS06024.pep
MHYHTNLIAALLLAALIHEGSAIWCYRCTSATPGCAEKFNWRGIGFLGEH
CPEPDDICVKVTERRGARETITRDCLSALSFRKDIPADKYEGCRPAAHDE
KLANYVNHTIKEHDVRRDYYTDTTFCFCFLDHRCNGASGLQTSAVIGLLT
LIPALLLR*

BS06024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
crim-PA 158 CG6038-PA 1..158 1..158 867 100 Plus