Clone Sequence Records
BS06024.3prime Sequence
507 bp (506 high quality bases) assembled on 2005-12-03
> BS06024.3prime
ATGGTCTAGAAAGCTTCTAGCGTAGAAGCAGGGCAGGAATTAGAGTGAGA
AGACCGATTACGGCGGACGTTTGTAGGCCGCTGGCCCCATTGCATCGATG
GTCGAGGAAGCAGAAACAGAACGTGGTGTCCGTGTAGTAGTCACGGCGCA
CGTCGTGCTCCTTGATCGTGTGGTTTACGTAGTTCGCTAGCTTTTCATCG
TGGGCGGCAGGACGACATCCTTCGTATTTGTCGGCGGGAATGTCTTTGCG
GAAGCTCAGCGCGCTTAGGCAGTCACGTGTGATTGTTTCCCTGGCGCCGC
GTCGCTCCGTCACCTTGACGCAAATGTCGTCCGGTTCCGGGCAGTGCTCG
CCCAGGAATCCTATTCCCCGCCAGTTAAACTTCTCCGCACAGCCGGGCGT
GGCCGAAGTGCAGCGGTAGCACCAAATTGCAGAGCCCTCGTGAATTAGAG
CTGCCAGCAGCAGGGCTGCAATGAGATTCGTATGGTAGTGCATGTCGACT
GATAACT
BS06024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6038-PA | 477 | CG6038-RA | 1..477 | 493..17 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 752 | CG6038-RA | 107..587 | 495..15 | 2405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11710672..11710952 | 15..295 | 1405 | 100 | Plus |
3L | 28110227 | 3L | 11711008..11711149 | 295..436 | 710 | 100 | Plus |
3L | 28110227 | 3L | 11711220..11711280 | 435..495 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:45:51 has no hits.
BS06024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:49 Download gff for
BS06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:37 Download gff for
BS06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:09:14 Download gff for
BS06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..598 | 5..501 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:14 Download gff for
BS06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..598 | 5..501 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:14 Download gff for
BS06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11710661..11710951 | 5..294 | 98 | <- | Plus |
3L | 11711008..11711148 | 295..435 | 100 | <- | Plus |
3L | 11711221..11711284 | 436..501 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:09:14 Download gff for
BS06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11703761..11704051 | 5..294 | 98 | <- | Plus |
arm_3L | 11704108..11704248 | 295..435 | 100 | <- | Plus |
arm_3L | 11704321..11704384 | 436..501 | 93 | | Plus |
BS06024.5prime Sequence
507 bp (506 high quality bases) assembled on 2005-12-03
> BS06024.5prime
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCTAGAAGCTTT
CTAGACC
BS06024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6038-PA | 477 | CG6038-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 752 | CG6038-RA | 107..587 | 15..495 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11710672..11710952 | 495..215 | 1405 | 100 | Minus |
3L | 28110227 | 3L | 11711008..11711149 | 215..74 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11711220..11711280 | 75..15 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:00:31 has no hits.
BS06024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:50 Download gff for
BS06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:39 Download gff for
BS06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:22 Download gff for
BS06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..598 | 9..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:43 Download gff for
BS06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..598 | 9..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:43 Download gff for
BS06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11710661..11710951 | 216..505 | 98 | <- | Minus |
3L | 11711008..11711148 | 75..215 | 100 | <- | Minus |
3L | 11711221..11711284 | 9..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:22 Download gff for
BS06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11703761..11704051 | 216..505 | 98 | <- | Minus |
arm_3L | 11704108..11704248 | 75..215 | 100 | <- | Minus |
arm_3L | 11704321..11704384 | 9..74 | 93 | | Minus |
BS06024.complete Sequence
509 bp (509 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635319
> BS06024.complete
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCTAGAAGCTTT
CTAGACCAT
BS06024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 477 | CG6038-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 752 | CG6038-RA | 107..587 | 15..495 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11710672..11710952 | 495..215 | 1405 | 100 | Minus |
3L | 28110227 | 3L | 11711008..11711149 | 215..74 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11711220..11711280 | 75..15 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:31:21 has no hits.
BS06024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:33 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:59 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-RA | 89..584 | 9..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:12 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 109..585 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:33 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-RA | 89..584 | 9..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:22 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 109..585 | 17..493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:22 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11711008..11711148 | 75..215 | 100 | <- | Minus |
3L | 11711221..11711278 | 17..74 | 100 | | Minus |
3L | 11710674..11710951 | 216..493 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:12 Download gff for
BS06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11703774..11704051 | 216..493 | 100 | <- | Minus |
arm_3L | 11704108..11704248 | 75..215 | 100 | <- | Minus |
arm_3L | 11704321..11704378 | 17..74 | 100 | | Minus |
BS06024.pep Sequence
Translation from 16 to 492
> BS06024.pep
MHYHTNLIAALLLAALIHEGSAIWCYRCTSATPGCAEKFNWRGIGFLGEH
CPEPDDICVKVTERRGARETITRDCLSALSFRKDIPADKYEGCRPAAHDE
KLANYVNHTIKEHDVRRDYYTDTTFCFCFLDHRCNGASGLQTSAVIGLLT
LIPALLLR*
BS06024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-PA | 158 | CG6038-PA | 1..158 | 1..158 | 867 | 100 | Plus |