Clone BS06027 Report

Search the DGRC for BS06027

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7655-RA
Protein status:BS06027.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06027.3prime Sequence

792 bp (791 high quality bases) assembled on 2005-12-03

> BS06027.3prime
ATGGTCTAGAAAGCTTTTACTTGGCCTTCAGTTCGAGTTTCTTGCGCTGC
AGTTGAATCTTCTGATAGGCCACATCCTTCTGATCTGTGGACCAGGCCAG
GTACATGTAGGTGGTCAGCAGCAAGGCCATGACTAGCCGATCCACGCTCA
TCACATTCGTGGCGAACAGGATGACCGACAGGCCCACAAACGAGGGATGT
CTGACATGGGCGTACAGATTGCGCAATTCCCCGGATTTGTAGCTGATGGG
CGGTCCGTAGGCCTTCAGATCGTAGTAGGCTTGCTTGACGCCCAGCAGCT
CTGGCAGATCCATCACCAAACTGCCGCCAAAGATGACAACCCAGCAGATG
CCATGGGTGATCACGAAGGTCCACCAAAGCGGAGCACTCTGCTCCACATC
GATTTGCCACAGAACAATCGACTGAGCGGGCAGCCAGTTGACGATCAAAT
AATGTAAACAAAGCGATGACGTCAGGCTATAAATAGTGCGCTCCGCACCC
GACAATCCCAACTTGGCCAACAGCTTCTTGACCACGGCTGACTTGAGGAA
GCTGTGCTGGAAGATGAATCCGATCAGGTAGAGGGTATCGAACACCACGG
GTCCATAGGCGGTCTGCAGGCGCGACTTGTTGTCCAGTAAATTGAAAATC
CAGGTGTGCGCCTTGGAAATCGAACGAGGCGTCGAAAGGAACATCATCAG
GCTGCCAACCACGTACAGGGAGTAAGCGAACGTGGCCAGGGATGCCAATA
GTACTATGGACTTGGCAATCGATGTCATGTCGACTGATAACT

BS06027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-PA 762 CG7655-RA 1..762 778..17 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-RA 1046 CG7655-RA 121..883 778..16 3815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17683175..17683610 451..16 2180 100 Minus
3R 32079331 3R 17682789..17683115 778..452 1635 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:26:31 has no hits.

BS06027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:53 Download gff for BS06027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:45 Download gff for BS06027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:37:11 Download gff for BS06027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 121..886 11..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:53:48 Download gff for BS06027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 121..886 11..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:53:48 Download gff for BS06027.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17682789..17683115 452..778 100 -> Minus
3R 17683175..17683613 11..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:37:11 Download gff for BS06027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13508511..13508837 452..778 100 -> Minus
arm_3R 13508897..13509335 11..451 99   Minus

BS06027.5prime Sequence

792 bp (731 high quality bases) assembled on 2005-12-03

> BS06027.5prime
GAAGTTATCAGTCGACATGACATCGATTGCCAAGTCCATAGTACTATTGG
CATCCCTGGCCACGTTCGCTTACTCCCTGTACGTGGTTGGCAGCCTGATG
ATGTTCCTTTCGACGCCTCGTTCGATTTCCAAGGCGCACACCTGGATTTT
CAATTTACTGGACAACAAGTCGCGCCTGCAGACCGCCTATGGACCCGTGG
TGTTCGATACCCTCTACCTGATCGGATTCATCTTCCAGCACAGCTTCCTC
AAGTCAGCCGTGGTCAAGAAGCTGTTGGCCAAGTTGGGATTGTCGGGTGC
GGAGCGCACTATTTATAGCCTGACGTCATCGCTTTGTTTACATTATTTGA
TCGTCAACTGGCTGCCCGCTCAGTCGATTGTTCTGTGGCAAATCGATGTG
GAGCAGAGTGCTCCGCTTTGGTGGACCTTCGTGATCACCCATGGCATCTG
CTGGGTTGTCATCTTTGGCGGCAGTTTGGTGATGGATCTGCCAGAGCTGC
TGGGCGTCAAGCAAGCCTACTACGATCTGAAGGCCTACGGACCGCCCATC
AGCTACAAATCCGGGGAATTGCGCAATCTGTACGCCCATGTCAGACATCC
CTCGTTTGTGGGCCTGTCGGTCATCCTGTTCGCCACGAATGTGATGAGCG
TGGATCGGCTAGTCATGGCCTTGCTGCTGACCACCTACATGTACCTGGCC
TGGTCCACAGATCAGAAGGATGTGGCCTATCAGAAGATTCAACTGCAGCG
CAAGAAACTCGAACTGAAGGCCAAGTAAAAGCTTTCTAGACC

BS06027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-PA 762 CG7655-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-RA 1046 CG7655-RA 121..883 17..779 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17683175..17683610 344..779 2180 100 Plus
3R 32079331 3R 17682789..17683115 17..343 1635 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:16:46 has no hits.

BS06027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:54 Download gff for BS06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:46 Download gff for BS06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:36 Download gff for BS06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 121..886 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:21 Download gff for BS06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 121..886 17..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:21 Download gff for BS06027.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17682789..17683115 17..343 100 -> Plus
3R 17683175..17683613 344..784 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:36 Download gff for BS06027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13508511..13508837 17..343 100 -> Plus
arm_3R 13508897..13509335 344..784 99   Plus

BS06027.complete Sequence

794 bp (794 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635320

> BS06027.complete
GAAGTTATCAGTCGACATGACATCGATTGCCAAGTCCATAGTACTATTGG
CATCCCTGGCCACGTTCGCTTACTCCCTGTACGTGGTTGGCAGCCTGATG
ATGTTCCTTTCGACGCCTCGTTCGATTTCCAAGGCGCACACCTGGATTTT
CAATTTACTGGACAACAAGTCGCGCCTGCAGACCGCCTATGGACCCGTGG
TGTTCGATACCCTCTACCTGATCGGATTCATCTTCCAGCACAGCTTCCTC
AAGTCAGCCGTGGTCAAGAAGCTGTTGGCCAAGTTGGGATTGTCGGGTGC
GGAGCGCACTATTTATAGCCTGACGTCATCGCTTTGTTTACATTATTTGA
TCGTCAACTGGCTGCCCGCTCAGTCGATTGTTCTGTGGCAAATCGATGTG
GAGCAGAGTGCTCCGCTTTGGTGGACCTTCGTGATCACCCATGGCATCTG
CTGGGTTGTCATCTTTGGCGGCAGTTTGGTGATGGATCTGCCAGAGCTGC
TGGGCGTCAAGCAAGCCTACTACGATCTGAAGGCCTACGGACCGCCCATC
AGCTACAAATCCGGGGAATTGCGCAATCTGTACGCCCATGTCAGACATCC
CTCGTTTGTGGGCCTGTCGGTCATCCTGTTCGCCACGAATGTGATGAGCG
TGGATCGGCTAGTCATGGCCTTGCTGCTGACCACCTACATGTACCTGGCC
TGGTCCACAGATCAGAAGGATGTGGCCTATCAGAAGATTCAACTGCAGCG
CAAGAAACTCGAACTGAAGGCCAAGTAAAAGCTTTCTAGACCAT

BS06027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-RA 762 CG7655-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-RA 1046 CG7655-RA 121..883 17..779 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17683175..17683610 344..779 2180 100 Plus
3R 32079331 3R 17682789..17683115 17..343 1635 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:10:34 has no hits.

BS06027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:58 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:57 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 119..884 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:43 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 121..880 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:58 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 119..884 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:53 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7655-RA 121..880 17..776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:53 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17682789..17683115 17..343 100 -> Plus
3R 17683175..17683607 344..776 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:43 Download gff for BS06027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13508511..13508837 17..343 100 -> Plus
arm_3R 13508897..13509329 344..776 100   Plus

BS06027.pep Sequence

Translation from 16 to 777

> BS06027.pep
MTSIAKSIVLLASLATFAYSLYVVGSLMMFLSTPRSISKAHTWIFNLLDN
KSRLQTAYGPVVFDTLYLIGFIFQHSFLKSAVVKKLLAKLGLSGAERTIY
SLTSSLCLHYLIVNWLPAQSIVLWQIDVEQSAPLWWTFVITHGICWVVIF
GGSLVMDLPELLGVKQAYYDLKAYGPPISYKSGELRNLYAHVRHPSFVGL
SVILFATNVMSVDRLVMALLLTTYMYLAWSTDQKDVAYQKIQLQRKKLEL
KAK*

BS06027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7655-PA 253 CG7655-PA 1..253 1..253 1292 100 Plus