Clone Sequence Records
BS06027.3prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-03
> BS06027.3prime
ATGGTCTAGAAAGCTTTTACTTGGCCTTCAGTTCGAGTTTCTTGCGCTGC
AGTTGAATCTTCTGATAGGCCACATCCTTCTGATCTGTGGACCAGGCCAG
GTACATGTAGGTGGTCAGCAGCAAGGCCATGACTAGCCGATCCACGCTCA
TCACATTCGTGGCGAACAGGATGACCGACAGGCCCACAAACGAGGGATGT
CTGACATGGGCGTACAGATTGCGCAATTCCCCGGATTTGTAGCTGATGGG
CGGTCCGTAGGCCTTCAGATCGTAGTAGGCTTGCTTGACGCCCAGCAGCT
CTGGCAGATCCATCACCAAACTGCCGCCAAAGATGACAACCCAGCAGATG
CCATGGGTGATCACGAAGGTCCACCAAAGCGGAGCACTCTGCTCCACATC
GATTTGCCACAGAACAATCGACTGAGCGGGCAGCCAGTTGACGATCAAAT
AATGTAAACAAAGCGATGACGTCAGGCTATAAATAGTGCGCTCCGCACCC
GACAATCCCAACTTGGCCAACAGCTTCTTGACCACGGCTGACTTGAGGAA
GCTGTGCTGGAAGATGAATCCGATCAGGTAGAGGGTATCGAACACCACGG
GTCCATAGGCGGTCTGCAGGCGCGACTTGTTGTCCAGTAAATTGAAAATC
CAGGTGTGCGCCTTGGAAATCGAACGAGGCGTCGAAAGGAACATCATCAG
GCTGCCAACCACGTACAGGGAGTAAGCGAACGTGGCCAGGGATGCCAATA
GTACTATGGACTTGGCAATCGATGTCATGTCGACTGATAACT
BS06027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-PA | 762 | CG7655-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-RA | 1046 | CG7655-RA | 121..883 | 778..16 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17683175..17683610 | 451..16 | 2180 | 100 | Minus |
3R | 32079331 | 3R | 17682789..17683115 | 778..452 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:26:31 has no hits.
BS06027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:53 Download gff for
BS06027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:45 Download gff for
BS06027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:37:11 Download gff for
BS06027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 121..886 | 11..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:53:48 Download gff for
BS06027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 121..886 | 11..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:53:48 Download gff for
BS06027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17682789..17683115 | 452..778 | 100 | -> | Minus |
3R | 17683175..17683613 | 11..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:37:11 Download gff for
BS06027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13508511..13508837 | 452..778 | 100 | -> | Minus |
arm_3R | 13508897..13509335 | 11..451 | 99 | | Minus |
BS06027.5prime Sequence
792 bp (731 high quality bases) assembled on 2005-12-03
> BS06027.5prime
GAAGTTATCAGTCGACATGACATCGATTGCCAAGTCCATAGTACTATTGG
CATCCCTGGCCACGTTCGCTTACTCCCTGTACGTGGTTGGCAGCCTGATG
ATGTTCCTTTCGACGCCTCGTTCGATTTCCAAGGCGCACACCTGGATTTT
CAATTTACTGGACAACAAGTCGCGCCTGCAGACCGCCTATGGACCCGTGG
TGTTCGATACCCTCTACCTGATCGGATTCATCTTCCAGCACAGCTTCCTC
AAGTCAGCCGTGGTCAAGAAGCTGTTGGCCAAGTTGGGATTGTCGGGTGC
GGAGCGCACTATTTATAGCCTGACGTCATCGCTTTGTTTACATTATTTGA
TCGTCAACTGGCTGCCCGCTCAGTCGATTGTTCTGTGGCAAATCGATGTG
GAGCAGAGTGCTCCGCTTTGGTGGACCTTCGTGATCACCCATGGCATCTG
CTGGGTTGTCATCTTTGGCGGCAGTTTGGTGATGGATCTGCCAGAGCTGC
TGGGCGTCAAGCAAGCCTACTACGATCTGAAGGCCTACGGACCGCCCATC
AGCTACAAATCCGGGGAATTGCGCAATCTGTACGCCCATGTCAGACATCC
CTCGTTTGTGGGCCTGTCGGTCATCCTGTTCGCCACGAATGTGATGAGCG
TGGATCGGCTAGTCATGGCCTTGCTGCTGACCACCTACATGTACCTGGCC
TGGTCCACAGATCAGAAGGATGTGGCCTATCAGAAGATTCAACTGCAGCG
CAAGAAACTCGAACTGAAGGCCAAGTAAAAGCTTTCTAGACC
BS06027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-PA | 762 | CG7655-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-RA | 1046 | CG7655-RA | 121..883 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17683175..17683610 | 344..779 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 17682789..17683115 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:16:46 has no hits.
BS06027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:54 Download gff for
BS06027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:46 Download gff for
BS06027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:36 Download gff for
BS06027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 121..886 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:21 Download gff for
BS06027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 121..886 | 17..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:21 Download gff for
BS06027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17682789..17683115 | 17..343 | 100 | -> | Plus |
3R | 17683175..17683613 | 344..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:36 Download gff for
BS06027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13508511..13508837 | 17..343 | 100 | -> | Plus |
arm_3R | 13508897..13509335 | 344..784 | 99 | | Plus |
BS06027.complete Sequence
794 bp (794 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635320
> BS06027.complete
GAAGTTATCAGTCGACATGACATCGATTGCCAAGTCCATAGTACTATTGG
CATCCCTGGCCACGTTCGCTTACTCCCTGTACGTGGTTGGCAGCCTGATG
ATGTTCCTTTCGACGCCTCGTTCGATTTCCAAGGCGCACACCTGGATTTT
CAATTTACTGGACAACAAGTCGCGCCTGCAGACCGCCTATGGACCCGTGG
TGTTCGATACCCTCTACCTGATCGGATTCATCTTCCAGCACAGCTTCCTC
AAGTCAGCCGTGGTCAAGAAGCTGTTGGCCAAGTTGGGATTGTCGGGTGC
GGAGCGCACTATTTATAGCCTGACGTCATCGCTTTGTTTACATTATTTGA
TCGTCAACTGGCTGCCCGCTCAGTCGATTGTTCTGTGGCAAATCGATGTG
GAGCAGAGTGCTCCGCTTTGGTGGACCTTCGTGATCACCCATGGCATCTG
CTGGGTTGTCATCTTTGGCGGCAGTTTGGTGATGGATCTGCCAGAGCTGC
TGGGCGTCAAGCAAGCCTACTACGATCTGAAGGCCTACGGACCGCCCATC
AGCTACAAATCCGGGGAATTGCGCAATCTGTACGCCCATGTCAGACATCC
CTCGTTTGTGGGCCTGTCGGTCATCCTGTTCGCCACGAATGTGATGAGCG
TGGATCGGCTAGTCATGGCCTTGCTGCTGACCACCTACATGTACCTGGCC
TGGTCCACAGATCAGAAGGATGTGGCCTATCAGAAGATTCAACTGCAGCG
CAAGAAACTCGAACTGAAGGCCAAGTAAAAGCTTTCTAGACCAT
BS06027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-RA | 762 | CG7655-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-RA | 1046 | CG7655-RA | 121..883 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17683175..17683610 | 344..779 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 17682789..17683115 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:10:34 has no hits.
BS06027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:18:58 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:59:57 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 119..884 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:43 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 121..880 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:18:58 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 119..884 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:53 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7655-RA | 121..880 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:53 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17682789..17683115 | 17..343 | 100 | -> | Plus |
3R | 17683175..17683607 | 344..776 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:43 Download gff for
BS06027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13508511..13508837 | 17..343 | 100 | -> | Plus |
arm_3R | 13508897..13509329 | 344..776 | 100 | | Plus |
BS06027.pep Sequence
Translation from 16 to 777
> BS06027.pep
MTSIAKSIVLLASLATFAYSLYVVGSLMMFLSTPRSISKAHTWIFNLLDN
KSRLQTAYGPVVFDTLYLIGFIFQHSFLKSAVVKKLLAKLGLSGAERTIY
SLTSSLCLHYLIVNWLPAQSIVLWQIDVEQSAPLWWTFVITHGICWVVIF
GGSLVMDLPELLGVKQAYYDLKAYGPPISYKSGELRNLYAHVRHPSFVGL
SVILFATNVMSVDRLVMALLLTTYMYLAWSTDQKDVAYQKIQLQRKKLEL
KAK*
BS06027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7655-PA | 253 | CG7655-PA | 1..253 | 1..253 | 1292 | 100 | Plus |