Clone BS06028 Report

Search the DGRC for BS06028

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:60
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCpr11B-RA
Protein status:BS06028.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06028.3prime Sequence

624 bp (623 high quality bases) assembled on 2005-12-03

> BS06028.3prime
ATGGTCTAGAAAGCTTTTAGTAGTGCCTGCGCTGGCGATATCCTGGTGGC
AGATATCGGGTGGCAGGAGCAGCAGCTGGGACATGCGATGAAGCCGATCC
ACGGTAGCCAGATCCACCAGCGCCATAAGAGCTGCGTCCAGCTGGAGCAG
CGGGAACCGAGGGCGAAACGGGTAGATGGGCACCTTCGGCATGGAATCCG
TTCTTATCGGCCGTGTAGTTCACCGTGTACTGCTTGCCATCATCCCCAGT
GTATGAGTAGGATCCCTGGACGCCCAGCGATCCGTGGGGCCAACCACCGC
GGAACTCACCGGTCTCATCGCGGTGAATACCATTACCAGTGTCAAAACCG
AAGTTGTAGTTGCCATTGGCGTCGCTGTTATAATCGCTCCTAACGATGGG
AATTTGTGGTTGTTGCTGTCGCTGGTAGCTGGAGCCGCCTCCAAAGGAAT
GTCCTGCGCCAGGACGAGCCTGTCCTTGGCCACTTACACCATGGTAGTGC
AGCTGACTCGCCTGCGGAGTGGGCAAATACCGTTGGCTAAGACGACCGGC
CAAAATGGCCGAGGAAAAGCCGAAAAGTACAAGGGCAACGGTCAACAGAG
GTCGCAGCATGTCGACTGATAACT

BS06028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2555-PA 594 CG2555-RA 1..594 610..17 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11B-RA 818 CG2555-RA 125..718 610..17 2970 100 Minus
Cpr11B-RB 812 CG2555-RB 125..712 610..17 2870 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12553248..12553510 610..348 1315 100 Minus
X 23542271 X 12553621..12553831 348..138 1055 100 Minus
X 23542271 X 12554014..12554135 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:03:55 has no hits.

BS06028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:55 Download gff for BS06028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2555-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:47 Download gff for BS06028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2555-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:00 Download gff for BS06028.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 125..718 17..610 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:52 Download gff for BS06028.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 125..718 17..610 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:52 Download gff for BS06028.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12553248..12553510 348..610 100 -> Minus
X 12553622..12553831 138..347 100 -> Minus
X 12554015..12554135 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:00 Download gff for BS06028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12447281..12447543 348..610 100 -> Minus
arm_X 12447655..12447864 138..347 100 -> Minus
arm_X 12448048..12448168 17..137 100   Minus

BS06028.5prime Sequence

624 bp (623 high quality bases) assembled on 2005-12-03

> BS06028.5prime
GAAGTTATCAGTCGACATGCTGCGACCTCTGTTGACCGTTGCCCTTGTAC
TTTTCGGCTTTTCCTCGGCCATTTTGGCCGGTCGTCTTAGCCAACGGTAT
TTGCCCACTCCGCAGGCGAGTCAGCTGCACTACCATGGTGTAAGTGGCCA
AGGACAGGCTCGTCCTGGCGCAGGACATTCCTTTGGAGGCGGCTCCAGCT
ACCAGCGACAGCAACAACCACAAATTCCCATCGTTAGGAGCGATTATAAC
AGCGACGCCAATGGCAACTACAACTTCGGTTTTGACACTGGTAATGGTAT
TCACCGCGATGAGACCGGTGAGTTCCGCGGTGGTTGGCCCCACGGATCGC
TGGGCGTCCAGGGATCCTACTCATACACTGGGGATGATGGCAAGCAGTAC
ACGGTGAACTACACGGCCGATAAGAACGGATTCCATGCCGAAGGTGCCCA
TCTACCCGTTTCGCCCTCGGTTCCCGCTGCTCCAGCTGGACGCAGCTCTT
ATGGCGCTGGTGGATCTGGCTACCGTGGATCGGCTTCATCGCATGTCCCA
GCTGCTGCTCCTGCCACCCGATATCTGCCACCAGGATATCGCCAGCGCAG
GCACTACTAAAAGCTTTCTAGACC

BS06028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2555-PA 594 CG2555-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11B-RA 818 CG2555-RA 125..718 17..610 2970 100 Plus
Cpr11B-RB 812 CG2555-RB 125..712 17..610 2870 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12553248..12553510 17..279 1315 100 Plus
X 23542271 X 12553621..12553831 279..489 1055 100 Plus
X 23542271 X 12554014..12554135 489..610 610 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:00:21 has no hits.

BS06028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:56 Download gff for BS06028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2555-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:49 Download gff for BS06028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2555-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:20 Download gff for BS06028.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 125..718 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:41 Download gff for BS06028.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 125..718 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:41 Download gff for BS06028.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12553248..12553510 17..279 100 -> Plus
X 12553622..12553831 280..489 100 -> Plus
X 12554015..12554135 490..610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:20 Download gff for BS06028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12447281..12447543 17..279 100 -> Plus
arm_X 12447655..12447864 280..489 100 -> Plus
arm_X 12448048..12448168 490..610 100   Plus

BS06028.complete Sequence

626 bp (626 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635321

> BS06028.complete
GAAGTTATCAGTCGACATGCTGCGACCTCTGTTGACCGTTGCCCTTGTAC
TTTTCGGCTTTTCCTCGGCCATTTTGGCCGGTCGTCTTAGCCAACGGTAT
TTGCCCACTCCGCAGGCGAGTCAGCTGCACTACCATGGTGTAAGTGGCCA
AGGACAGGCTCGTCCTGGCGCAGGACATTCCTTTGGAGGCGGCTCCAGCT
ACCAGCGACAGCAACAACCACAAATTCCCATCGTTAGGAGCGATTATAAC
AGCGACGCCAATGGCAACTACAACTTCGGTTTTGACACTGGTAATGGTAT
TCACCGCGATGAGACCGGTGAGTTCCGCGGTGGTTGGCCCCACGGATCGC
TGGGCGTCCAGGGATCCTACTCATACACTGGGGATGATGGCAAGCAGTAC
ACGGTGAACTACACGGCCGATAAGAACGGATTCCATGCCGAAGGTGCCCA
TCTACCCGTTTCGCCCTCGGTTCCCGCTGCTCCAGCTGGACGCAGCTCTT
ATGGCGCTGGTGGATCTGGCTACCGTGGATCGGCTTCATCGCATGTCCCA
GCTGCTGCTCCTGCCACCCGATATCTGCCACCAGGATATCGCCAGCGCAG
GCACTACTAAAAGCTTTCTAGACCAT

BS06028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11B-RA 594 CG2555-PA 1..594 17..610 2970 100 Plus
Cpr11B-RB 588 CG2555-PB 1..588 17..610 2845 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11B-RA 818 CG2555-RA 125..718 17..610 2970 100 Plus
Cpr11B-RB 812 CG2555-RB 125..712 17..610 2845 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12553248..12553510 17..279 1315 100 Plus
X 23542271 X 12553621..12553831 279..489 1055 100 Plus
X 23542271 X 12554014..12554135 489..610 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:43:38 has no hits.

BS06028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:55 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:41 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 119..712 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:16 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 125..716 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:55 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 119..712 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:59 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11B-RA 125..716 17..608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:59 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
X 12554015..12554133 490..608 100   Plus
X 12553248..12553510 17..279 100 -> Plus
X 12553622..12553831 280..489 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:16 Download gff for BS06028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12448048..12448166 490..608 100   Plus
arm_X 12447281..12447543 17..279 100 -> Plus
arm_X 12447655..12447864 280..489 100 -> Plus

BS06028.pep Sequence

Translation from 16 to 609

> BS06028.pep
MLRPLLTVALVLFGFSSAILAGRLSQRYLPTPQASQLHYHGVSGQGQARP
GAGHSFGGGSSYQRQQQPQIPIVRSDYNSDANGNYNFGFDTGNGIHRDET
GEFRGGWPHGSLGVQGSYSYTGDDGKQYTVNYTADKNGFHAEGAHLPVSP
SVPAAPAGRSSYGAGGSGYRGSASSHVPAAAPATRYLPPGYRQRRHY*

BS06028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11B-PA 197 CG2555-PA 1..197 1..197 1063 100 Plus
Cpr11B-PB 195 CG2555-PB 1..195 1..197 1041 99 Plus
Cpr47Ea-PA 135 CG9079-PA 22..129 47..157 207 40.2 Plus
Cpr47Ef-PD 601 CG13214-PD 93..249 40..171 202 35 Plus
Cpr65Az-PA 239 CG12330-PA 84..217 32..171 196 31 Plus