Clone Sequence Records
BS06028.3prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-03
> BS06028.3prime
ATGGTCTAGAAAGCTTTTAGTAGTGCCTGCGCTGGCGATATCCTGGTGGC
AGATATCGGGTGGCAGGAGCAGCAGCTGGGACATGCGATGAAGCCGATCC
ACGGTAGCCAGATCCACCAGCGCCATAAGAGCTGCGTCCAGCTGGAGCAG
CGGGAACCGAGGGCGAAACGGGTAGATGGGCACCTTCGGCATGGAATCCG
TTCTTATCGGCCGTGTAGTTCACCGTGTACTGCTTGCCATCATCCCCAGT
GTATGAGTAGGATCCCTGGACGCCCAGCGATCCGTGGGGCCAACCACCGC
GGAACTCACCGGTCTCATCGCGGTGAATACCATTACCAGTGTCAAAACCG
AAGTTGTAGTTGCCATTGGCGTCGCTGTTATAATCGCTCCTAACGATGGG
AATTTGTGGTTGTTGCTGTCGCTGGTAGCTGGAGCCGCCTCCAAAGGAAT
GTCCTGCGCCAGGACGAGCCTGTCCTTGGCCACTTACACCATGGTAGTGC
AGCTGACTCGCCTGCGGAGTGGGCAAATACCGTTGGCTAAGACGACCGGC
CAAAATGGCCGAGGAAAAGCCGAAAAGTACAAGGGCAACGGTCAACAGAG
GTCGCAGCATGTCGACTGATAACT
BS06028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2555-PA | 594 | CG2555-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11B-RA | 818 | CG2555-RA | 125..718 | 610..17 | 2970 | 100 | Minus |
Cpr11B-RB | 812 | CG2555-RB | 125..712 | 610..17 | 2870 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12553248..12553510 | 610..348 | 1315 | 100 | Minus |
X | 23542271 | X | 12553621..12553831 | 348..138 | 1055 | 100 | Minus |
X | 23542271 | X | 12554014..12554135 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:03:55 has no hits.
BS06028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:55 Download gff for
BS06028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2555-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:47 Download gff for
BS06028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2555-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:00 Download gff for
BS06028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 125..718 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:52 Download gff for
BS06028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 125..718 | 17..610 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:52 Download gff for
BS06028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12553248..12553510 | 348..610 | 100 | -> | Minus |
X | 12553622..12553831 | 138..347 | 100 | -> | Minus |
X | 12554015..12554135 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:00 Download gff for
BS06028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12447281..12447543 | 348..610 | 100 | -> | Minus |
arm_X | 12447655..12447864 | 138..347 | 100 | -> | Minus |
arm_X | 12448048..12448168 | 17..137 | 100 | | Minus |
BS06028.5prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-03
> BS06028.5prime
GAAGTTATCAGTCGACATGCTGCGACCTCTGTTGACCGTTGCCCTTGTAC
TTTTCGGCTTTTCCTCGGCCATTTTGGCCGGTCGTCTTAGCCAACGGTAT
TTGCCCACTCCGCAGGCGAGTCAGCTGCACTACCATGGTGTAAGTGGCCA
AGGACAGGCTCGTCCTGGCGCAGGACATTCCTTTGGAGGCGGCTCCAGCT
ACCAGCGACAGCAACAACCACAAATTCCCATCGTTAGGAGCGATTATAAC
AGCGACGCCAATGGCAACTACAACTTCGGTTTTGACACTGGTAATGGTAT
TCACCGCGATGAGACCGGTGAGTTCCGCGGTGGTTGGCCCCACGGATCGC
TGGGCGTCCAGGGATCCTACTCATACACTGGGGATGATGGCAAGCAGTAC
ACGGTGAACTACACGGCCGATAAGAACGGATTCCATGCCGAAGGTGCCCA
TCTACCCGTTTCGCCCTCGGTTCCCGCTGCTCCAGCTGGACGCAGCTCTT
ATGGCGCTGGTGGATCTGGCTACCGTGGATCGGCTTCATCGCATGTCCCA
GCTGCTGCTCCTGCCACCCGATATCTGCCACCAGGATATCGCCAGCGCAG
GCACTACTAAAAGCTTTCTAGACC
BS06028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2555-PA | 594 | CG2555-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11B-RA | 818 | CG2555-RA | 125..718 | 17..610 | 2970 | 100 | Plus |
Cpr11B-RB | 812 | CG2555-RB | 125..712 | 17..610 | 2870 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12553248..12553510 | 17..279 | 1315 | 100 | Plus |
X | 23542271 | X | 12553621..12553831 | 279..489 | 1055 | 100 | Plus |
X | 23542271 | X | 12554014..12554135 | 489..610 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:00:21 has no hits.
BS06028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:28:56 Download gff for
BS06028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2555-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:03:49 Download gff for
BS06028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2555-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:46:20 Download gff for
BS06028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 125..718 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:41 Download gff for
BS06028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 125..718 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:41 Download gff for
BS06028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12553248..12553510 | 17..279 | 100 | -> | Plus |
X | 12553622..12553831 | 280..489 | 100 | -> | Plus |
X | 12554015..12554135 | 490..610 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:46:20 Download gff for
BS06028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12447281..12447543 | 17..279 | 100 | -> | Plus |
arm_X | 12447655..12447864 | 280..489 | 100 | -> | Plus |
arm_X | 12448048..12448168 | 490..610 | 100 | | Plus |
BS06028.complete Sequence
626 bp (626 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635321
> BS06028.complete
GAAGTTATCAGTCGACATGCTGCGACCTCTGTTGACCGTTGCCCTTGTAC
TTTTCGGCTTTTCCTCGGCCATTTTGGCCGGTCGTCTTAGCCAACGGTAT
TTGCCCACTCCGCAGGCGAGTCAGCTGCACTACCATGGTGTAAGTGGCCA
AGGACAGGCTCGTCCTGGCGCAGGACATTCCTTTGGAGGCGGCTCCAGCT
ACCAGCGACAGCAACAACCACAAATTCCCATCGTTAGGAGCGATTATAAC
AGCGACGCCAATGGCAACTACAACTTCGGTTTTGACACTGGTAATGGTAT
TCACCGCGATGAGACCGGTGAGTTCCGCGGTGGTTGGCCCCACGGATCGC
TGGGCGTCCAGGGATCCTACTCATACACTGGGGATGATGGCAAGCAGTAC
ACGGTGAACTACACGGCCGATAAGAACGGATTCCATGCCGAAGGTGCCCA
TCTACCCGTTTCGCCCTCGGTTCCCGCTGCTCCAGCTGGACGCAGCTCTT
ATGGCGCTGGTGGATCTGGCTACCGTGGATCGGCTTCATCGCATGTCCCA
GCTGCTGCTCCTGCCACCCGATATCTGCCACCAGGATATCGCCAGCGCAG
GCACTACTAAAAGCTTTCTAGACCAT
BS06028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11B-RA | 594 | CG2555-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Cpr11B-RB | 588 | CG2555-PB | 1..588 | 17..610 | 2845 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11B-RA | 818 | CG2555-RA | 125..718 | 17..610 | 2970 | 100 | Plus |
Cpr11B-RB | 812 | CG2555-RB | 125..712 | 17..610 | 2845 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12553248..12553510 | 17..279 | 1315 | 100 | Plus |
X | 23542271 | X | 12553621..12553831 | 279..489 | 1055 | 100 | Plus |
X | 23542271 | X | 12554014..12554135 | 489..610 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:43:38 has no hits.
BS06028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:55 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:41 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 119..712 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:16 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 125..716 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:55 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 119..712 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:59 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11B-RA | 125..716 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:59 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12554015..12554133 | 490..608 | 100 | | Plus |
X | 12553248..12553510 | 17..279 | 100 | -> | Plus |
X | 12553622..12553831 | 280..489 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:16 Download gff for
BS06028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12448048..12448166 | 490..608 | 100 | | Plus |
arm_X | 12447281..12447543 | 17..279 | 100 | -> | Plus |
arm_X | 12447655..12447864 | 280..489 | 100 | -> | Plus |
BS06028.pep Sequence
Translation from 16 to 609
> BS06028.pep
MLRPLLTVALVLFGFSSAILAGRLSQRYLPTPQASQLHYHGVSGQGQARP
GAGHSFGGGSSYQRQQQPQIPIVRSDYNSDANGNYNFGFDTGNGIHRDET
GEFRGGWPHGSLGVQGSYSYTGDDGKQYTVNYTADKNGFHAEGAHLPVSP
SVPAAPAGRSSYGAGGSGYRGSASSHVPAAAPATRYLPPGYRQRRHY*
BS06028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11B-PA | 197 | CG2555-PA | 1..197 | 1..197 | 1063 | 100 | Plus |
Cpr11B-PB | 195 | CG2555-PB | 1..195 | 1..197 | 1041 | 99 | Plus |
Cpr47Ea-PA | 135 | CG9079-PA | 22..129 | 47..157 | 207 | 40.2 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 93..249 | 40..171 | 202 | 35 | Plus |
Cpr65Az-PA | 239 | CG12330-PA | 84..217 | 32..171 | 196 | 31 | Plus |